All File Changes

v383_preview to v383_preview2 (2019-05-27 to 2019-06-03) v383

• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 13, context: html, text, full: html, text
    ac0d694dd1b7a53bd182b9555048eaa3fb0bf512 Sun Jun 2 14:31:20 2019 -0700
    sort myHub list alphabetically by shortLabel
• src/hg/htdocs/FAQ/FAQlink.html
  • lines changed 4, context: html, text, full: html, text
    60cc449248255df9e198db757a627cc31c8f6e4d Thu May 30 15:19:57 2019 -0700
    Code review changing quot char to " and adding spaces #23570
• src/hg/htdocs/FAQ/FAQreleases.html
  • lines changed 1, context: html, text, full: html, text
    d2a2f8a5e3a945acf94cb1d9a3fa2b752dbcd049 Mon Jun 3 09:23:39 2019 -0700
    removing old claim
• src/hg/htdocs/goldenPath/help/api.html
  • lines changed 6, context: html, text, full: html, text
    49c8c187d62eefad13f63e8e01fe12f820eb0ef9 Tue May 28 15:02:26 2019 -0700
    Updating api.html based on Ann suggestions #18869
• src/hg/htdocs/goldenPath/newsarch.html
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    113727536e6127b877028be857f0e4729f387597 Tue May 28 14:39:23 2019 -0700
    removed unecessary period
• src/hg/htdocs/indexNews.html
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    113727536e6127b877028be857f0e4729f387597 Tue May 28 14:39:23 2019 -0700
    removed unecessary period
• src/hg/hubApi/list.c
  • lines changed 29, context: html, text, full: html, text
    f587148862bf76eb764a550db5d52b00318679fc Wed May 29 10:28:10 2019 -0700
    Report item counts correctly for big* types whose files are specified in db tables instead of bigDataUrl settings. refs #18869, #23521
  • lines changed 20, context: html, text, full: html, text
    26c2f650359cc1c74fb31d96109bc0f8dedbc3d7 Thu May 30 10:32:19 2019 -0700
    Adding BAM and VCF item counts to hubApi's list/tracks function. Note: older index files may not contain counts. refs #18869, #23521
• src/hg/inc/trackDb.h
  • lines changed 15, context: html, text, full: html, text
    fa7a11afb5f19dd5a2fa3382fc38662f34b6f147 Wed May 29 13:55:44 2019 -0700
    first cut at caching trackDb in a shared memory location. No changes in running code if "cacheTrackDb" hg.conf variable doesn't exist
• src/hg/lib/hdb.c
  • lines changed 46, context: html, text, full: html, text
    fa7a11afb5f19dd5a2fa3382fc38662f34b6f147 Wed May 29 13:55:44 2019 -0700
    first cut at caching trackDb in a shared memory location. No changes in running code if "cacheTrackDb" hg.conf variable doesn't exist
• src/hg/lib/hui.c
  • lines changed 5, context: html, text, full: html, text
    616f4b3c9fb1e234c4998202afd9718a7b00699c Wed May 29 10:24:59 2019 -0700
    put out a warning instead of crashing if the number of subtracks in a subGroup is zero. #23364
• src/hg/lib/trackDbCustom.c
  • lines changed 130, context: html, text, full: html, text
    fa7a11afb5f19dd5a2fa3382fc38662f34b6f147 Wed May 29 13:55:44 2019 -0700
    first cut at caching trackDb in a shared memory location. No changes in running code if "cacheTrackDb" hg.conf variable doesn't exist
• src/hg/makeDb/doc/encode3/tfbs.txt
  • lines changed 9, context: html, text, full: html, text
    ecfd1eef6885909797fafb4c5da8f934971de265 Thu May 30 07:47:34 2019 -0700
    Remove chrEBV from tables. refs #23243
• src/hg/makeDb/doc/hg19.txt
  • lines changed 30, context: html, text, full: html, text
    f86cc1e3f913432f81ad47733aae8e78ab9500c6 Mon May 27 12:06:58 2019 -0700
    output total number of aligned bases in pslStats -overallStats
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • lines changed 2, context: html, text, full: html, text
    cb1d427e7dd4718f8b8bfe295193825057d38b07 Thu May 30 14:20:18 2019 -0700
    Turning on GenBank updates for new assembly #22425
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    85dbefce8c26b28bdce5dde61af3f51ceffc55cf Fri May 31 15:32:26 2019 -0700
    Adding criGriChoV2 to the GenBank update list #20540
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 2, context: html, text, full: html, text
    cb1d427e7dd4718f8b8bfe295193825057d38b07 Thu May 30 14:20:18 2019 -0700
    Turning on GenBank updates for new assembly #22425
• src/hg/makeDb/outside/gencode/gencodeLoad.mk
  • lines changed 15, context: html, text, full: html, text
    f86cc1e3f913432f81ad47733aae8e78ab9500c6 Mon May 27 12:06:58 2019 -0700
    output total number of aligned bases in pslStats -overallStats
• src/hg/makeDb/trackDb/affyAllExonProbes.html
  • lines changed 1, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/cgapSage.html
  • lines changed 4, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/criGri/criGriChoV2/description.html
  • lines changed 3, context: html, text, full: html, text
    c0957b8f9870139309c8323c1e60752491577787 Thu May 30 15:24:58 2019 -0700
    Code review changing image size and description #23570
• src/hg/makeDb/trackDb/criGri/criGriChoV2/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    f65466cf1807453714fb9aa6e74e547986276582 Thu May 30 15:13:16 2019 -0700
    Code review changing track to pack #23570
• src/hg/makeDb/trackDb/fosEndPairs.html
  • lines changed 1, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/genomicSuperDups.html
  • lines changed 1, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/acescan.html
  • lines changed 1, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/chainNetVertebrate.ra
  • lines changed 6, context: html, text, full: html, text
    d8750af406ef83629925c54f339b13d3138c4c0c Thu May 30 17:02:00 2019 -0700
    Adding galGal6 to the vertebrate composite #18071
• src/hg/makeDb/trackDb/human/encodeEgaspPartial.html
  • lines changed 1, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeEgaspSuper.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/encodeStanfordPromoters.html
  • lines changed 1, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/gwasCatalog.html
  • lines changed 1, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hapmapLdPh.html
  • lines changed 1, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/burgeRnaSeqGemMapperAlign.html
  • lines changed 2, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/chainSelf.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/cnp.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/cons44way.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/consIndelsHgMmCanFam.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeBUORChID.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeMsaTbaDec07.html
  • lines changed 1, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeNhgriDukeDnaseHs.html
  • lines changed 1, context: html, text, full: html, text
    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUViennaRnaz.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUWRegulomeBase.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUcsdNgGif.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeUwDnaseSuper.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleAffyRNATars.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleAffyRNATransMap.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipPval.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipRfbr.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSig.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSites.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/encodeYaleChipSuper.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/exaptedRepeats.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/exoniphy.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/genotypeArrays.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/mostConserved28way.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/multiz17way.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/multiz28way.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/omimAvSnp.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/pgSnp.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/phastConsElements17way.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/phyloPCons28way.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/stsMap.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/tajD.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/tajdSnp.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeGisChipPetAll.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDGF.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
    Updating redirected links for hg18, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg19/encode3.ra
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    f0cd395408a32673eb4d1b5344005334390b0004 Thu May 30 16:11:43 2019 -0700
    Clean-up trackDb files for staging track release (including assure new tracks are not default, manage pennantIcons). refs #23243
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
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    280129bd4633e10b368b89f4d1fcd62b879f6e99 Mon May 27 13:33:46 2019 -0700
    reintroduce the panaply of hg19 ENCODE tracks to the world.
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    f0cd395408a32673eb4d1b5344005334390b0004 Thu May 30 16:11:43 2019 -0700
    Clean-up trackDb files for staging track release (including assure new tracks are not default, manage pennantIcons). refs #23243
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
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    280129bd4633e10b368b89f4d1fcd62b879f6e99 Mon May 27 13:33:46 2019 -0700
    reintroduce the panaply of hg19 ENCODE tracks to the world.
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    f0cd395408a32673eb4d1b5344005334390b0004 Thu May 30 16:11:43 2019 -0700
    Clean-up trackDb files for staging track release (including assure new tracks are not default, manage pennantIcons). refs #23243
• src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.dev.ra
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    f0cd395408a32673eb4d1b5344005334390b0004 Thu May 30 16:11:43 2019 -0700
    Clean-up trackDb files for staging track release (including assure new tracks are not default, manage pennantIcons). refs #23243
• src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.new.ra
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    f0cd395408a32673eb4d1b5344005334390b0004 Thu May 30 16:11:43 2019 -0700
    Clean-up trackDb files for staging track release (including assure new tracks are not default, manage pennantIcons). refs #23243
• src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra
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    f0cd395408a32673eb4d1b5344005334390b0004 Thu May 30 16:11:43 2019 -0700
    Clean-up trackDb files for staging track release (including assure new tracks are not default, manage pennantIcons). refs #23243
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSuper.release2.ra
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    da4ca419bb30c3e7f43220a0293f57a6beb9db8a Wed May 29 21:22:31 2019 -0700
    Remove spurious pennantIcon.
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    78d681d3b235839ca36624653df2584378e34f3e Thu May 30 09:27:31 2019 -0700
    Removing leaked pennantIcon, no RM
• src/hg/makeDb/trackDb/human/hg38/encode3.ra
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    f0cd395408a32673eb4d1b5344005334390b0004 Thu May 30 16:11:43 2019 -0700
    Clean-up trackDb files for staging track release (including assure new tracks are not default, manage pennantIcons). refs #23243
• src/hg/makeDb/trackDb/human/hg38/gdcCancer.html
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    ed586a3d88397e7c622ea7486d875a9f6efcf1bb Tue May 28 16:01:41 2019 -0700
    Making edits from my code review, CR #23574
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    f0cd395408a32673eb4d1b5344005334390b0004 Thu May 30 16:11:43 2019 -0700
    Clean-up trackDb files for staging track release (including assure new tracks are not default, manage pennantIcons). refs #23243
• src/hg/makeDb/trackDb/human/hg38/trackDb.wgEncode.ra
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    f0cd395408a32673eb4d1b5344005334390b0004 Thu May 30 16:11:43 2019 -0700
    Clean-up trackDb files for staging track release (including assure new tracks are not default, manage pennantIcons). refs #23243
• src/hg/makeDb/trackDb/human/hgdpGeo.html
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    d2a02f56a0e84d51213d44955b694ce7daace230 Fri May 31 11:41:50 2019 -0700
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• src/hg/makeDb/trackDb/human/laminB1Super.html
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• src/hg/makeDb/trackDb/human/ntHumChimpCodingDiff.html
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• src/hg/makeDb/trackDb/human/ntOoaHaplo.html
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• src/hg/makeDb/trackDb/human/ntSssSnps.html
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• src/hg/makeDb/trackDb/human/omimGene2.html
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    50f22fcbde2fb3419659f5282c4fadc4e87d39a9 Fri May 31 10:02:45 2019 -0700
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• src/hg/makeDb/trackDb/mouse/mm10/trackDb.placentalsChainNet.ra
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    50f22fcbde2fb3419659f5282c4fadc4e87d39a9 Fri May 31 10:02:45 2019 -0700
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• src/hg/makeDb/trackDb/mouse/mm10/trackDb.vertebrateChainNet.ra
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    50f22fcbde2fb3419659f5282c4fadc4e87d39a9 Fri May 31 10:02:45 2019 -0700
    Spring cleaning for chain/net tracks #18071
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• src/hg/makeDb/trackDb/opossum/monDom5/multiz9way.html
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    f86cc1e3f913432f81ad47733aae8e78ab9500c6 Mon May 27 12:06:58 2019 -0700
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    f86cc1e3f913432f81ad47733aae8e78ab9500c6 Mon May 27 12:06:58 2019 -0700
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    f86cc1e3f913432f81ad47733aae8e78ab9500c6 Mon May 27 12:06:58 2019 -0700
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    f86cc1e3f913432f81ad47733aae8e78ab9500c6 Mon May 27 12:06:58 2019 -0700
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    26c2f650359cc1c74fb31d96109bc0f8dedbc3d7 Thu May 30 10:32:19 2019 -0700
    Adding BAM and VCF item counts to hubApi's list/tracks function. Note: older index files may not contain counts. refs #18869, #23521
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    cb63a575751c4a60e48340bd320934cccb053f75 Wed May 29 13:14:08 2019 -0700
    some tweaks to the lm allocater to allow it to use a memory block passed into rather than allocating its own memory. Also a checkpoint routine for the memory allocators that allows a caller to find out how much memory has been allocated since the last time it was called.
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    cb63a575751c4a60e48340bd320934cccb053f75 Wed May 29 13:14:08 2019 -0700
    some tweaks to the lm allocater to allow it to use a memory block passed into rather than allocating its own memory. Also a checkpoint routine for the memory allocators that allows a caller to find out how much memory has been allocated since the last time it was called.
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    76b7f51a5be7d26bc0638b123ad4fd3d61d8406c Wed May 29 10:54:02 2019 -0700
    postscript output was missing the ability to outline circles. Now it works!
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    26c2f650359cc1c74fb31d96109bc0f8dedbc3d7 Thu May 30 10:32:19 2019 -0700
    Adding BAM and VCF item counts to hubApi's list/tracks function. Note: older index files may not contain counts. refs #18869, #23521
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    26c2f650359cc1c74fb31d96109bc0f8dedbc3d7 Thu May 30 10:32:19 2019 -0700
    Adding BAM and VCF item counts to hubApi's list/tracks function. Note: older index files may not contain counts. refs #18869, #23521
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    cb63a575751c4a60e48340bd320934cccb053f75 Wed May 29 13:14:08 2019 -0700
    some tweaks to the lm allocater to allow it to use a memory block passed into rather than allocating its own memory. Also a checkpoint routine for the memory allocators that allows a caller to find out how much memory has been allocated since the last time it was called.
• src/lib/memalloc.c
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    cb63a575751c4a60e48340bd320934cccb053f75 Wed May 29 13:14:08 2019 -0700
    some tweaks to the lm allocater to allow it to use a memory block passed into rather than allocating its own memory. Also a checkpoint routine for the memory allocators that allows a caller to find out how much memory has been allocated since the last time it was called.
• src/lib/psGfx.c
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    76b7f51a5be7d26bc0638b123ad4fd3d61d8406c Wed May 29 10:54:02 2019 -0700
    postscript output was missing the ability to outline circles. Now it works!
• src/lib/pscmGfx.c
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    76b7f51a5be7d26bc0638b123ad4fd3d61d8406c Wed May 29 10:54:02 2019 -0700
    postscript output was missing the ability to outline circles. Now it works!
• src/lib/vcf.c
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    26c2f650359cc1c74fb31d96109bc0f8dedbc3d7 Thu May 30 10:32:19 2019 -0700
    Adding BAM and VCF item counts to hubApi's list/tracks function. Note: older index files may not contain counts. refs #18869, #23521
• src/utils/qa/weeklybld/buildEnv.csh
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    741578c275286801fec3af039c3b73cce4f147d6 Mon Jun 3 10:10:46 2019 -0700
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