All File Changes

v385_preview2 to v385_base (2019-07-15 to 2019-07-22) v385

• confs/asia.hg.conf
  • lines changed 18, context: html, text, full: html, text
    33a04e2a6a5b368ab28a574ab033ccf3ce2455a7 Sun Jul 21 01:11:56 2019 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/hgTables/bedList.c
  • lines changed 2, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/hgTables/filterFields.c
  • lines changed 13, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/hgTables/hgTables.c
  • lines changed 8, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/hgTables/hgTables.h
  • lines changed 26, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/hgTables/hic.c
  • lines changed 397, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/hgTables/intersect.c
  • lines changed 2, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/hgTables/joining.c
  • lines changed 11, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/hgTables/mainPage.c
  • lines changed 6, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/hgTables/makefile
  • lines changed 2, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/hgTables/schema.c
  • lines changed 4, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/hgTracks/hicTrack.c
  • lines changed 118, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/hgc/gencodeClick.c
  • lines changed 2, context: html, text, full: html, text
    9c9bcde0ff7379019dcce66c23471c2848dc884b Wed Jul 17 19:18:37 2019 -0700
    updated gencode biotypes and tags links due to site changes
  • lines changed 7, context: html, text, full: html, text
    71c6d9c65dcbb95c4c1840a2409e7457aed62c66 Wed Jul 17 19:21:15 2019 -0700
    removed links to HAVANA as database is archives and HAVANA ids are on their way out
• src/hg/htdocs/FAQ/FAQdownloads.html
  • lines changed 50, context: html, text, full: html, text
    7af128b78ed12bb2c36df19130df47a09e03c41b Fri Jul 19 16:01:51 2019 -0700
    Adding info about liftOver #16541
• src/hg/htdocs/goldenPath/help/gbic.html
  • lines changed 11, context: html, text, full: html, text
    32ffc191ad2340e01474998c9d51f0e141d42e7b Tue Jul 16 11:45:11 2019 -0700
    Adding MariaDB to explain we use a MariaDB database in place of MySQL, refs #23597
• src/hg/htdocs/goldenPath/help/mirror.html
  • lines changed 7, context: html, text, full: html, text
    32ffc191ad2340e01474998c9d51f0e141d42e7b Tue Jul 16 11:45:11 2019 -0700
    Adding MariaDB to explain we use a MariaDB database in place of MySQL, refs #23597
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 11, context: html, text, full: html, text
    030a9178e44241790faf9299cbc33191d0d55860 Tue Jul 16 13:28:24 2019 -0700
    Swapping MySQL to MariaDB in documentation, refs #23597
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 26, context: html, text, full: html, text
    d5dbd5f29d2c2ccae42cd9f032eeb66d50df5336 Mon Jul 15 15:31:20 2019 -0700
    News announcement for V5 TransMap track #23729
  • lines changed 15, context: html, text, full: html, text
    6fdb21f89a85f541fd6dde4a723274c30dde5475 Wed Jul 17 16:32:10 2019 -0700
    Adding GENCODE VM22 track release news #23792
  • lines changed 2, context: html, text, full: html, text
    3a210f5dd8c29fef0ac415e86703a00edfc3a422 Thu Jul 18 15:53:56 2019 -0700
    Making announcement more clear that it's a sub-track #23752
  • lines changed 3, context: html, text, full: html, text
    dca6662f08da5280a691965fdf6a86cbb5133ad8 Thu Jul 18 16:02:14 2019 -0700
    Adding a link and fixing a typo in VM22 announcement #23792
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    d5dbd5f29d2c2ccae42cd9f032eeb66d50df5336 Mon Jul 15 15:31:20 2019 -0700
    News announcement for V5 TransMap track #23729
  • lines changed 10, context: html, text, full: html, text
    6fdb21f89a85f541fd6dde4a723274c30dde5475 Wed Jul 17 16:32:10 2019 -0700
    Adding GENCODE VM22 track release news #23792
• src/hg/htdocs/style/HGStyle.css
  • lines changed 1, context: html, text, full: html, text
    920182af2776a6d9069df29d2ea81b3aadf84a40 Tue Jul 16 13:38:54 2019 -0700
    Switching MySQL mentions with MariaDB, refs #23579
• src/hg/htdocs/training/index.html
  • lines changed 39, context: html, text, full: html, text
    800fad2177770fd8992162b76503950d66fb4c72 Wed Jul 17 18:45:15 2019 -0700
    dropped completed brazil and nhgri workshops, add fred hutchinson and moved kansas city workshop into list of next four
• src/hg/inc/encode/wgEncodeGencodeAttrs.h
  • lines changed 2, context: html, text, full: html, text
    438d43910f377e7abe8b81cb9b04acaadaca1b6d Thu Jul 18 13:04:33 2019 -0700
    indicated that GENCODE gene/transcript status columns are obsolete
• src/hg/inc/hic.h
  • lines changed 10, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/inc/hicUi.h
  • lines changed 5, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/inc/trackDb.h
  • lines changed 6, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    52148600588f39f123013614612c81257488fdc3 Mon Jul 22 10:04:50 2019 -0700
    New version number v385
• src/hg/lib/encode/wgEncodeGencodeAttrs.as
  • lines changed 2, context: html, text, full: html, text
    438d43910f377e7abe8b81cb9b04acaadaca1b6d Thu Jul 18 13:04:33 2019 -0700
    indicated that GENCODE gene/transcript status columns are obsolete
• src/hg/lib/encode/wgEncodeGencodeAttrs.sql
  • lines changed 2, context: html, text, full: html, text
    438d43910f377e7abe8b81cb9b04acaadaca1b6d Thu Jul 18 13:04:33 2019 -0700
    indicated that GENCODE gene/transcript status columns are obsolete
• src/hg/lib/hic.c
  • lines changed 100, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/lib/hicUi.c
  • lines changed 27, context: html, text, full: html, text
    90aa101ee4f9e47a77b2eac496eca213a787d513 Mon Jul 22 01:53:32 2019 -0700
    Adding table browser support for hic tracks, refs #22316
• src/hg/lib/hui.c
  • lines changed 2, context: html, text, full: html, text
    95a953fa8fd9dfb77dc8042165046299c83e9117 Mon Jul 22 02:12:38 2019 -0700
    Selected fields in hgTables should also work for hic tracks, refs #22316
• src/hg/lib/omimGeneMap2.as
  • lines changed 15, context: html, text, full: html, text
    d2da1341d245cf5a5d574e2f75375ef49091ad30 Tue Jul 16 13:18:35 2019 -0700
    Rework of omim otto pipeline to accomadate new genemap schema, no refs
• src/hg/lib/omimGeneMap2.sql
  • lines changed 16, context: html, text, full: html, text
    d2da1341d245cf5a5d574e2f75375ef49091ad30 Tue Jul 16 13:18:35 2019 -0700
    Rework of omim otto pipeline to accomadate new genemap schema, no refs
• src/hg/lib/tandemDups.as
  • lines changed 18, context: html, text, full: html, text
    b77c7579dafeb9bb2a070e5043ee34b87f7e151b Fri Jul 19 15:23:18 2019 -0700
    correct column definitions for tandemDups.bb tracks refs #23734
• src/hg/logCrawl/dbTrackAndSearchUsage/generateUsageStats.py
  • lines changed 1, context: html, text, full: html, text
    20565a1e95c35b4c4949f2b609778e33ce862513 Tue Jul 16 13:21:20 2019 -0700
    Adding absolute path for hgsql to run cronjob, no RM
• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • lines changed 2, context: html, text, full: html, text
    a7ad142a0ac39c7c2e171e110e879c1cfd07bb1d Tue Jul 16 09:36:29 2019 -0700
    Turning on GenBank updates for new assembly #21223
• src/hg/makeDb/genbank/src/process/gbProcess.c
  • lines changed 1, context: html, text, full: html, text
    bbdbc81178ed2c06a9d1e30c01871893ab81d453 Tue Jul 16 15:33:21 2019 -0700
    fix compiler error
• src/hg/makeDb/outside/gencode/gencodeGenerateTrackDbs
  • lines changed 4, context: html, text, full: html, text
    852192003e5f8886030929c8ccba081463b92fa4 Wed Jul 17 16:41:58 2019 -0700
    updated gencode links to match site changes
  • lines changed 10, context: html, text, full: html, text
    420df98ed5d99b83c27e449769189e1f7e5e462a Wed Jul 17 19:06:38 2019 -0700
    changed some generated URL due to changes in gencode site
• src/hg/makeDb/schema/all.joiner
  • lines changed 2, context: html, text, full: html, text
    a752476ec8ec48ef55c5daf4ad3120f869da76d0 Mon Jul 15 11:35:53 2019 -0700
    Adding tables to tablesIgnored list per MarkD's request #23792
  • lines changed 2, context: html, text, full: html, text
    b73bfc991690da58e96387bf39fab34f51b02894 Mon Jul 15 15:29:30 2019 -0700
    specify mouse ignored gencode tables as a wild card to match all versions
• src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra
  • lines changed 1, context: html, text, full: html, text
    0919f3fad795afb78fb43c300536ec62f45726a5 Wed Jul 17 09:31:02 2019 -0700
    Adding a missing include statement for hg19's V31 GENCODE tracks, refs #23791
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV31lift37.html
  • lines changed 6, context: html, text, full: html, text
    b847950a6276d0a2ee6884157a84a8666307cd6a Wed Jul 17 16:20:13 2019 -0700
    Updating http to https and fixing broken links for the All GENCODE V31lift37 tracks, refs #23791
  • lines changed 5, context: html, text, full: html, text
    420df98ed5d99b83c27e449769189e1f7e5e462a Wed Jul 17 19:06:38 2019 -0700
    changed some generated URL due to changes in gencode site
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV31lift37.ra
  • lines changed 2, context: html, text, full: html, text
    9d70bf3583665d54448a72a02fcc384a8eb17273 Fri Jul 19 14:58:54 2019 -0700
    Turning on the new GENCODE v31 track for hg38 and leaving it hidden for hg19, refs #23790 #23791
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV28.ra
  • lines changed 1, context: html, text, full: html, text
    9d70bf3583665d54448a72a02fcc384a8eb17273 Fri Jul 19 14:58:54 2019 -0700
    Turning on the new GENCODE v31 track for hg38 and leaving it hidden for hg19, refs #23790 #23791
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV31.html
  • lines changed 5, context: html, text, full: html, text
    6a71ad056d5144070855c335f7925ab8ee330196 Wed Jul 17 16:39:20 2019 -0700
    Updating http to https and fixing a broken link for hg38's All GENCODE V31, refs #23790
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV31.ra
  • lines changed 1, context: html, text, full: html, text
    9d70bf3583665d54448a72a02fcc384a8eb17273 Fri Jul 19 14:58:54 2019 -0700
    Turning on the new GENCODE v31 track for hg38 and leaving it hidden for hg19, refs #23790 #23791
• src/hg/makeDb/trackDb/human/refSeqCompositeHuman.html
  • lines changed 278, context: html, text, full: html, text
    2f106a9cd51707e6772b96064b2fcfc30bca95b0 Thu Jul 18 14:54:51 2019 -0700
    Switching YP with NP mention in all organism execept human, refs #23818
  • lines changed 278, context: html, text, full: html, text
    d4ecfb99f3d657c23434e078924e18010ebfd5da Thu Jul 18 15:48:58 2019 -0700
    Remvoing refSeqCompositeHuman files because refSeqComposite is globally inherited, refs #23818
• src/hg/makeDb/trackDb/human/refSeqCompositeHuman.ra
  • lines changed 200, context: html, text, full: html, text
    2f106a9cd51707e6772b96064b2fcfc30bca95b0 Thu Jul 18 14:54:51 2019 -0700
    Switching YP with NP mention in all organism execept human, refs #23818
  • lines changed 1, context: html, text, full: html, text
    eaee56008efdda915686796920f460143ecaf4fb Thu Jul 18 15:27:20 2019 -0700
    Editing include statment to point at .html file not .ra file, refs #23818
  • lines changed 200, context: html, text, full: html, text
    d4ecfb99f3d657c23434e078924e18010ebfd5da Thu Jul 18 15:48:58 2019 -0700
    Remvoing refSeqCompositeHuman files because refSeqComposite is globally inherited, refs #23818
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    2f106a9cd51707e6772b96064b2fcfc30bca95b0 Thu Jul 18 14:54:51 2019 -0700
    Switching YP with NP mention in all organism execept human, refs #23818
  • lines changed 2, context: html, text, full: html, text
    d4ecfb99f3d657c23434e078924e18010ebfd5da Thu Jul 18 15:48:58 2019 -0700
    Remvoing refSeqCompositeHuman files because refSeqComposite is globally inherited, refs #23818
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM21.ra
  • lines changed 1, context: html, text, full: html, text
    1cd6d2afd69e6c4359afbc92c4ba7294b31b5f6a Tue Jul 16 16:41:03 2019 -0700
    Replacing VM21 for VM22 as the default gencode track for mouse #23792
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM22.html
  • lines changed 4, context: html, text, full: html, text
    420df98ed5d99b83c27e449769189e1f7e5e462a Wed Jul 17 19:06:38 2019 -0700
    changed some generated URL due to changes in gencode site
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM22.ra
  • lines changed 1, context: html, text, full: html, text
    1cd6d2afd69e6c4359afbc92c4ba7294b31b5f6a Tue Jul 16 16:41:03 2019 -0700
    Replacing VM21 for VM22 as the default gencode track for mouse #23792
  • lines changed 1, context: html, text, full: html, text
    420df98ed5d99b83c27e449769189e1f7e5e462a Wed Jul 17 19:06:38 2019 -0700
    changed some generated URL due to changes in gencode site
• src/hg/makeDb/trackDb/rat/rn4/multiz9way.html
  • lines changed 2, context: html, text, full: html, text
    37c7f341bfd1f05a574c4379fb93287ebc73ab16 Fri Jul 19 09:01:50 2019 -0700
    Updating http to https for rn4, uiLinks cronjob.
• src/hg/makeDb/trackDb/refSeqComposite.html
  • lines changed 1, context: html, text, full: html, text
    2f106a9cd51707e6772b96064b2fcfc30bca95b0 Thu Jul 18 14:54:51 2019 -0700
    Switching YP with NP mention in all organism execept human, refs #23818
  • lines changed 1, context: html, text, full: html, text
    d4ecfb99f3d657c23434e078924e18010ebfd5da Thu Jul 18 15:48:58 2019 -0700
    Remvoing refSeqCompositeHuman files because refSeqComposite is globally inherited, refs #23818
  • lines changed 1, context: html, text, full: html, text
    ab1f76a9f9584135781f3897ff94a5522ca7e3c2 Thu Jul 18 15:52:33 2019 -0700
    Rewriting refSeqCurated description to include YP_* , refs #23818
  • lines changed 3, context: html, text, full: html, text
    48d3221e1e9896b4d6b3b2aa969dc4906295699b Fri Jul 19 11:40:28 2019 -0700
    Updating description to mention YP & NP are mitochondrial, refs #23818
• src/hg/makeDb/trackDb/refSeqComposite.ra
  • lines changed 3, context: html, text, full: html, text
    2f106a9cd51707e6772b96064b2fcfc30bca95b0 Thu Jul 18 14:54:51 2019 -0700
    Switching YP with NP mention in all organism execept human, refs #23818
  • lines changed 3, context: html, text, full: html, text
    d4ecfb99f3d657c23434e078924e18010ebfd5da Thu Jul 18 15:48:58 2019 -0700
    Remvoing refSeqCompositeHuman files because refSeqComposite is globally inherited, refs #23818
  • lines changed 3, context: html, text, full: html, text
    48d3221e1e9896b4d6b3b2aa969dc4906295699b Fri Jul 19 11:40:28 2019 -0700
    Updating description to mention YP & NP are mitochondrial, refs #23818
• src/hg/makeDb/trackDb/sacCer/sacCer2/multiz7way.html
  • lines changed 2, context: html, text, full: html, text
    00e67790e3e6bc0a6c151e54f1259b6bf4f53b4c Tue Jul 16 09:23:31 2019 -0700
    Updating http to https for sacCer2, uiLinks cronjob.
• src/hg/makeDb/trackDb/trackDb.transMap.ra
  • lines changed 1, context: html, text, full: html, text
    d3b0814029d03a2361bc61e888bc71e8ad7553ff Mon Jul 15 13:46:22 2019 -0700
    Adding pennantIcon for new track #23729
• src/hg/makeDb/trackDb/wgEncodeGencodeCredits1.shared.html
  • lines changed 2, context: html, text, full: html, text
    672f36ce43c028f845007af230541ebf7f5d7c1a Thu Jul 18 15:05:26 2019 -0700
    Updating a broken GENCODE publications link, refs #23790
• src/hg/utils/automation/HgAutomate.pm
  • lines changed 7, context: html, text, full: html, text
    8c518d29a2dc04b3164a120f36a8d0c8d7bd6892 Thu Jul 18 13:18:47 2019 -0700
    allow hgwdev to be used as a cluster refs #23734
• src/hg/utils/automation/asmHubTanDups.pl
  • lines changed 155, context: html, text, full: html, text
    b3833e993f98922e22e1278e632716e729ec54ad Fri Jul 19 15:24:34 2019 -0700
    adding gapOverlap and tandemDups tracks to the asmHub build refs #23734
• src/hg/utils/automation/asmHubTrackDb.sh
  • lines changed 48, context: html, text, full: html, text
    b3833e993f98922e22e1278e632716e729ec54ad Fri Jul 19 15:24:34 2019 -0700
    adding gapOverlap and tandemDups tracks to the asmHub build refs #23734
• src/hg/utils/automation/doAssemblyHub.pl
  • lines changed 56, context: html, text, full: html, text
    1c0cb9b18d0e449cbdae2c681d0a0abdcacd1e7e Fri Jul 19 10:34:46 2019 -0700
    add augustusSpecies argument rearrange masking fix allGaps refs #23734
  • lines changed 51, context: html, text, full: html, text
    b3833e993f98922e22e1278e632716e729ec54ad Fri Jul 19 15:24:34 2019 -0700
    adding gapOverlap and tandemDups tracks to the asmHub build refs #23734
  • lines changed 1, context: html, text, full: html, text
    87bf7cb823cbfa92f36c972b1e4f805e97ab7e3e Mon Jul 22 10:01:43 2019 -0700
    correctly cleaning windowMasker refs #23734
• src/hg/utils/otto/omim/buildOmimTracks.sh
  • lines changed 39, context: html, text, full: html, text
    d2da1341d245cf5a5d574e2f75375ef49091ad30 Tue Jul 16 13:18:35 2019 -0700
    Rework of omim otto pipeline to accomadate new genemap schema, no refs
• src/hg/utils/otto/omim/checkOmim.sh
  • lines changed 1, context: html, text, full: html, text
    d2da1341d245cf5a5d574e2f75375ef49091ad30 Tue Jul 16 13:18:35 2019 -0700
    Rework of omim otto pipeline to accomadate new genemap schema, no refs
• src/hg/utils/otto/omim/doOmimGeneSymbols/doOmimGeneSymbols.c
  • lines changed 1, context: html, text, full: html, text
    d2da1341d245cf5a5d574e2f75375ef49091ad30 Tue Jul 16 13:18:35 2019 -0700
    Rework of omim otto pipeline to accomadate new genemap schema, no refs
• src/hg/utils/otto/omim/doOmimLocation/doOmimLocation.c
  • lines changed 1, context: html, text, full: html, text
    d2da1341d245cf5a5d574e2f75375ef49091ad30 Tue Jul 16 13:18:35 2019 -0700
    Rework of omim otto pipeline to accomadate new genemap schema, no refs
• src/hg/utils/otto/omim/doOmimPhenotype.pl
  • lines changed 5, context: html, text, full: html, text
    d2da1341d245cf5a5d574e2f75375ef49091ad30 Tue Jul 16 13:18:35 2019 -0700
    Rework of omim otto pipeline to accomadate new genemap schema, no refs
• src/hg/utils/otto/omim/omim.tables
  • lines changed 1, context: html, text, full: html, text
    d2da1341d245cf5a5d574e2f75375ef49091ad30 Tue Jul 16 13:18:35 2019 -0700
    Rework of omim otto pipeline to accomadate new genemap schema, no refs
• src/inc/common.mk
  • lines changed 1, context: html, text, full: html, text
    29b6acc8ad1b89ba768559f56246a1ec5c58f1ae Fri Jul 19 08:27:30 2019 -0700
    obtain HAL include and library from a version-specific directory to allow easily moving to a new version
• src/inc/srcVersion.h
  • lines changed 1, context: html, text, full: html, text
    52148600588f39f123013614612c81257488fdc3 Mon Jul 22 10:04:50 2019 -0700
    New version number v385
• src/lib/bbiRead.c
  • lines changed 4, context: html, text, full: html, text
    9ab880cbeaee49b0bd54a84f436445961044b820 Mon Jul 15 15:59:39 2019 -0700
    in bbi files (bigWig, bigBed, etc.) check for chroms without 'chr' preface if otherwise chromosome isn't found
• src/utils/findMotif/findMotif.c
  • lines changed 5, context: html, text, full: html, text
    f81b7f500a81f07abeacdab89886d0c82cef19e0 Thu Jul 18 15:54:08 2019 -0700
    broken code to discover GAPS in sequence refs #23734
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    d863ec7abd54b0c2a634bf71718cc1fbf1f795cc Mon Jul 22 10:04:20 2019 -0700
    v385 final build, refs #23806
• src/utils/ucscApiClient
  • lines changed 1, context: html, text, full: html, text
    1c02d7c115b216d3bcb70d760c35d727b01739e3 Mon Jul 15 14:57:57 2019 -0700
    Use /usr/bin/env so api client works on mac

• lines changed: 2424
• files changed: 93