All File Changes

v393_base to v394_preview (2020-01-27 to 2020-02-03) v394

• src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c
  • lines changed 3, context: html, text, full: html, text
    e4b99af233414a05e2a223cd3a02d4d97280499d Mon Jan 27 16:30:58 2020 -0800
    Aligning CGI and static page footers, also bumping FontAwesome version called in cgi header. Removed Formats from drop-down below Browse. refs #24002 #23380
  • lines changed 13, context: html, text, full: html, text
    6c1f41fb7917a57861810431337b400d21714c25 Thu Jan 30 18:17:24 2020 -0800
    Initial check-in for a new top-bar showing the selected facets and their values for easily seeing what has been selected, and de-selecting is easy by clicking there if you want to. Also added an explicit button for clearing the Restrictions, i.e. cdwFile_filter cart var filter.
  • lines changed 7, context: html, text, full: html, text
    e14e13c90aa4b8a325f165d44bca1035cd111bb8 Sat Feb 1 12:40:53 2020 -0800
    cirm cdwWebBrowse. Cannot just pass initialwhere, so get it from the cart.
• src/hg/cirm/cdw/lib/cdwHeadTagDependencies.h
  • lines changed 3, context: html, text, full: html, text
    e4b99af233414a05e2a223cd3a02d4d97280499d Mon Jan 27 16:30:58 2020 -0800
    Aligning CGI and static page footers, also bumping FontAwesome version called in cgi header. Removed Formats from drop-down below Browse. refs #24002 #23380
• src/hg/cirm/cdw/lib/cdwNavBar.h
  • lines changed 1, context: html, text, full: html, text
    e4b99af233414a05e2a223cd3a02d4d97280499d Mon Jan 27 16:30:58 2020 -0800
    Aligning CGI and static page footers, also bumping FontAwesome version called in cgi header. Removed Formats from drop-down below Browse. refs #24002 #23380
• src/hg/cirm/cdw/lib/cdwPageFooter.h
  • lines changed 19, context: html, text, full: html, text
    e4b99af233414a05e2a223cd3a02d4d97280499d Mon Jan 27 16:30:58 2020 -0800
    Aligning CGI and static page footers, also bumping FontAwesome version called in cgi header. Removed Formats from drop-down below Browse. refs #24002 #23380
  • lines changed 1, context: html, text, full: html, text
    372d2c903d05a66241237c21d651d9d3a362174d Fri Jan 31 08:14:08 2020 -0800
    Fixing name for linkedin incon, no redmine.
• src/hg/cirm/cdw/lib/cdwPageHeader.h
  • lines changed 5, context: html, text, full: html, text
    72a8e9e88ce7190a5666e5260915369a23e529a0 Mon Jan 27 14:46:00 2020 -0800
    Remove Search Box
• src/hg/cirm/gateway/htdocs/MISCE2.0.pdf
  • lines changed 0, context: html, text, full: html, text
    9112364a57f18875a89a3047f0fc44d60ac3fc0e Mon Jan 27 14:43:54 2020 -0800
    Remove search box in header.html. Add Northstar and NDEx card, Add Scimtar logo in tools.html, Updated MISCE pdf, Updated Home page Description in index.html, Rearrange (Alphabetize) dataset in project.html
• src/hg/cirm/gateway/htdocs/cescg/cescgPeople.html
  • lines changed 54, context: html, text, full: html, text
    1ac53b1326f761eebb0b5b3f401e95c294c108dc Mon Jan 27 18:59:22 2020 -0800
    Added new Data Wrangling Intern People, Updated text format for role
  • lines changed 1, context: html, text, full: html, text
    058c13c72f5f1bcec7781450245b01dd0560b070 Mon Jan 27 19:19:57 2020 -0800
    Fixed src image link to Dr.Frazer,PhD
• src/hg/cirm/gateway/htdocs/inc/footer.html
  • lines changed 1, context: html, text, full: html, text
    e4b99af233414a05e2a223cd3a02d4d97280499d Mon Jan 27 16:30:58 2020 -0800
    Aligning CGI and static page footers, also bumping FontAwesome version called in cgi header. Removed Formats from drop-down below Browse. refs #24002 #23380
• src/hg/cirm/gateway/htdocs/inc/header.html
  • lines changed 5, context: html, text, full: html, text
    9112364a57f18875a89a3047f0fc44d60ac3fc0e Mon Jan 27 14:43:54 2020 -0800
    Remove search box in header.html. Add Northstar and NDEx card, Add Scimtar logo in tools.html, Updated MISCE pdf, Updated Home page Description in index.html, Rearrange (Alphabetize) dataset in project.html
• src/hg/cirm/gateway/htdocs/index.html
  • lines changed 42, context: html, text, full: html, text
    9112364a57f18875a89a3047f0fc44d60ac3fc0e Mon Jan 27 14:43:54 2020 -0800
    Remove search box in header.html. Add Northstar and NDEx card, Add Scimtar logo in tools.html, Updated MISCE pdf, Updated Home page Description in index.html, Rearrange (Alphabetize) dataset in project.html
• src/hg/cirm/gateway/htdocs/projects.html
  • lines changed 976, context: html, text, full: html, text
    9112364a57f18875a89a3047f0fc44d60ac3fc0e Mon Jan 27 14:43:54 2020 -0800
    Remove search box in header.html. Add Northstar and NDEx card, Add Scimtar logo in tools.html, Updated MISCE pdf, Updated Home page Description in index.html, Rearrange (Alphabetize) dataset in project.html
• src/hg/cirm/gateway/htdocs/style/cirmStyle.css
  • lines changed 6, context: html, text, full: html, text
    6c1f41fb7917a57861810431337b400d21714c25 Thu Jan 30 18:17:24 2020 -0800
    Initial check-in for a new top-bar showing the selected facets and their values for easily seeing what has been selected, and de-selecting is easy by clicking there if you want to. Also added an explicit button for clearing the Restrictions, i.e. cdwFile_filter cart var filter.
• src/hg/cirm/gateway/htdocs/tools.html
  • lines changed 73, context: html, text, full: html, text
    9112364a57f18875a89a3047f0fc44d60ac3fc0e Mon Jan 27 14:43:54 2020 -0800
    Remove search box in header.html. Add Northstar and NDEx card, Add Scimtar logo in tools.html, Updated MISCE pdf, Updated Home page Description in index.html, Rearrange (Alphabetize) dataset in project.html
• src/hg/hgPublicSessions/hgPublicSessions.c
  • lines changed 4, context: html, text, full: html, text
    30ea90f3a0e0f816e27053eb60fb401e2d045aec Wed Jan 29 16:59:58 2020 -0800
    Public Sessions now orders most recent first by default. Ordering is also more granular (to the second instead of just to the day). refs #21228
• src/hg/hgSession/hgSession.c
  • lines changed 4, context: html, text, full: html, text
    30ea90f3a0e0f816e27053eb60fb401e2d045aec Wed Jan 29 16:59:58 2020 -0800
    Public Sessions now orders most recent first by default. Ordering is also more granular (to the second instead of just to the day). refs #21228
• src/hg/hgTracks/wigTrack.c
  • lines changed 3, context: html, text, full: html, text
    d22aae888b247f7aeedbe0592e431af74c192515 Thu Jan 30 17:34:20 2020 -0800
    fix problem with group autoscale and collections with add or subtract as merge type. Also fix long existing problem of using right click to change merge type from add/subtract to something else.
• src/hg/htdocs/goldenPath/help/customTrackText.html
  • lines changed 11, context: html, text, full: html, text
    c5f99c872ca8a06458c33f93547e8b551556f48f Wed Jan 29 12:49:55 2020 -0800
    Adding a doWiggle entry for custom track lines -and fixing a " needed in the page, refs #24857
• src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html
  • lines changed 1, context: html, text, full: html, text
    4d824a89a35bdd5eafb2519b4d0ea298adf5451f Mon Jan 27 14:41:14 2020 -0800
    Correcting typo from Code Review refs #24842
• src/hg/htdocs/goldenPath/help/metadata.html
  • lines changed 117, context: html, text, full: html, text
    122b566fdaf3a4bcb26835deaa0b537f1c7cc39a Thu Jan 30 08:22:01 2020 -0800
    Committing a stub of a track hub metadata help page I wrote a long time ago, refs #21641
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 1, context: html, text, full: html, text
    8c3ca032ea13efe749d5c7281d1519bde88cf562 Fri Jan 31 11:16:45 2020 -0800
    Changing 'and' to 'or' in the news announcement from Bob's code review, refs #24840
• src/hg/htdocs/images/2019-nCoV.jpg
  • lines changed 0, context: html, text, full: html, text
    1f2373cd5d35b4cb3db0ee2497380d7844cb3266 Wed Jan 29 11:19:54 2020 -0800
    coronavirus viron schematic from Belouzard, et al. Viruses. 2012 Jun; 4(6): 1011-1033
• src/hg/htdocs/training/index.html
  • lines changed 48, context: html, text, full: html, text
    31f17a421771bb90b07ef5216361aa97d2ab686e Thu Jan 30 16:39:46 2020 -0800
    removed completed north carolina and oregon workshops. moved ucsf, radboud, ohsu into near-future list. added brno (maybe), nhgri
• src/hg/inc/facetField.h
  • lines changed 3, context: html, text, full: html, text
    6c1f41fb7917a57861810431337b400d21714c25 Thu Jan 30 18:17:24 2020 -0800
    Initial check-in for a new top-bar showing the selected facets and their values for easily seeing what has been selected, and de-selecting is easy by clicking there if you want to. Also added an explicit button for clearing the Restrictions, i.e. cdwFile_filter cart var filter.
• src/hg/inc/tablesTables.h
  • lines changed 2, context: html, text, full: html, text
    6c1f41fb7917a57861810431337b400d21714c25 Thu Jan 30 18:17:24 2020 -0800
    Initial check-in for a new top-bar showing the selected facets and their values for easily seeing what has been selected, and de-selecting is easy by clicking there if you want to. Also added an explicit button for clearing the Restrictions, i.e. cdwFile_filter cart var filter.
  • lines changed 2, context: html, text, full: html, text
    e14e13c90aa4b8a325f165d44bca1035cd111bb8 Sat Feb 1 12:40:53 2020 -0800
    cirm cdwWebBrowse. Cannot just pass initialwhere, so get it from the cart.
• src/hg/inc/trackDb.h
  • lines changed 3, context: html, text, full: html, text
    79ab7bed49d3d2a550d372fb58ab4bb283a6d31e Thu Jan 30 00:08:47 2020 -0800
    append trackDb names to the end of the db for trackDb cache directory to support comma-separated lists of trackDb tables
• src/hg/js/hgTracks.js
  • lines changed 3, context: html, text, full: html, text
    d22aae888b247f7aeedbe0592e431af74c192515 Thu Jan 30 17:34:20 2020 -0800
    fix problem with group autoscale and collections with add or subtract as merge type. Also fix long existing problem of using right click to change merge type from add/subtract to something else.
• src/hg/lib/facetField.c
  • lines changed 25, context: html, text, full: html, text
    6c1f41fb7917a57861810431337b400d21714c25 Thu Jan 30 18:17:24 2020 -0800
    Initial check-in for a new top-bar showing the selected facets and their values for easily seeing what has been selected, and de-selecting is easy by clicking there if you want to. Also added an explicit button for clearing the Restrictions, i.e. cdwFile_filter cart var filter.
• src/hg/lib/gtexUi.c
  • lines changed 3, context: html, text, full: html, text
    85a175ddc967c470fa60da37cc0ca54088c0af02 Wed Jan 29 11:20:39 2020 -0800
    Strip version number to allow portal link to work when gene versions change. refs #24860
• src/hg/lib/hdb.c
  • lines changed 11, context: html, text, full: html, text
    79ab7bed49d3d2a550d372fb58ab4bb283a6d31e Thu Jan 30 00:08:47 2020 -0800
    append trackDb names to the end of the db for trackDb cache directory to support comma-separated lists of trackDb tables
• src/hg/lib/tablesTables.c
  • lines changed 105, context: html, text, full: html, text
    6c1f41fb7917a57861810431337b400d21714c25 Thu Jan 30 18:17:24 2020 -0800
    Initial check-in for a new top-bar showing the selected facets and their values for easily seeing what has been selected, and de-selecting is easy by clicking there if you want to. Also added an explicit button for clearing the Restrictions, i.e. cdwFile_filter cart var filter.
  • lines changed 49, context: html, text, full: html, text
    fff97fa89d9b02325b999b0621e676bdf4a1d202 Fri Jan 31 16:09:46 2020 -0800
    cleanup of tablesTables.c
  • lines changed 38, context: html, text, full: html, text
    30b62c9240f4136e4b92c2606a786c2da8f77241 Fri Jan 31 16:40:57 2020 -0800
    little more optimization
  • lines changed 10, context: html, text, full: html, text
    e14e13c90aa4b8a325f165d44bca1035cd111bb8 Sat Feb 1 12:40:53 2020 -0800
    cirm cdwWebBrowse. Cannot just pass initialwhere, so get it from the cart.
• src/hg/lib/trackDbCache.c
  • lines changed 32, context: html, text, full: html, text
    79ab7bed49d3d2a550d372fb58ab4bb283a6d31e Thu Jan 30 00:08:47 2020 -0800
    append trackDb names to the end of the db for trackDb cache directory to support comma-separated lists of trackDb tables
• src/hg/makeDb/doc/globalReference/mkSymLinks.sh
  • lines changed 35, context: html, text, full: html, text
    ea79a1e6a7795f886789c87decc48cd89646fa2e Mon Jan 27 14:28:39 2020 -0800
    destination directory for symlinks is now in a new location refs #24354
• src/hg/makeDb/doc/wuhCor1/initialBuild.txt
  • lines changed 1240, context: html, text, full: html, text
    9093f0d4ffd8ea540c1244f9ff899b97faddd260 Wed Jan 29 11:55:41 2020 -0800
    beginning build of wuhCor1 browser
  • lines changed 492, context: html, text, full: html, text
    23fe352f0fecf53c475eab36afb881e57aa59f8a Wed Jan 29 14:31:52 2020 -0800
    nearing completion refs #24851
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • lines changed 1, context: html, text, full: html, text
    14a10390c971b0a970b25277135067f7bdd7f89a Wed Jan 29 09:42:29 2020 -0800
    Let genbank find general 'otter' cdnas as well as northern and souther sea otter cdnas, refs Jonathan email
• src/hg/makeDb/schema/all.joiner
  • lines changed 5, context: html, text, full: html, text
    a9a452d3405a1d32a6a4f0e71ec02cdd70792d1a Thu Jan 30 11:32:13 2020 -0800
    add definitions for wuhCor1 refs #24851
• src/hg/makeDb/trackDb/human/clinvar.html
  • lines changed 3, context: html, text, full: html, text
    982173a412c443685c6a186f220849d16cdfdfde Thu Jan 30 13:44:29 2020 -0800
    adding data access section to masterming, adding link to API to clinvar, no redmine, off-list email from Robert Shore
• src/hg/makeDb/trackDb/human/hg19/doseSensitivity.ra
  • lines changed 27, context: html, text, full: html, text
    56bd05da3e479f71dc7f90fe1293bcd67ddc1775 Fri Jan 31 14:11:44 2020 -0800
    initial view of ClinGen composite track refs #24818
• src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
  • lines changed 3, context: html, text, full: html, text
    ffc955b57d7d5d72ea1507ac48c798cdd147b962 Thu Jan 30 12:41:33 2020 -0800
    Turning hg19 gnomad variants subtracks on by default when gnomad super track is set to show, refs #24868
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    57e9627cb63435624fcd060ef043f457c9fa90f2 Thu Jan 30 01:55:56 2020 -0800
    moving problemtic regions back to composite track, refs #24245
  • lines changed 2, context: html, text, full: html, text
    56bd05da3e479f71dc7f90fe1293bcd67ddc1775 Fri Jan 31 14:11:44 2020 -0800
    initial view of ClinGen composite track refs #24818
  • lines changed 1, context: html, text, full: html, text
    fda82a1e1744be6caba431efd13d10a979743a7e Sat Feb 1 02:42:26 2020 -0800
    fixing problematic regions track, refs #24245
• src/hg/makeDb/trackDb/human/hg38/tgpPhase3.html
  • lines changed 1, context: html, text, full: html, text
    ba0b321c8b3860cd5d27b1c85619304d759aca9b Fri Jan 31 11:26:39 2020 -0800
    Fixing a sentence from Bob's code review, refs #24840
• src/hg/makeDb/trackDb/human/mastermind.html
  • lines changed 20, context: html, text, full: html, text
    982173a412c443685c6a186f220849d16cdfdfde Thu Jan 30 13:44:29 2020 -0800
    adding data access section to masterming, adding link to API to clinvar, no redmine, off-list email from Robert Shore
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 20, context: html, text, full: html, text
    42cfa7cdcf1157a9f9cffa92967ae49df2b42b64 Fri Jan 31 01:56:25 2020 -0800
    adding clinvar filters, refs #24850
  • lines changed 2, context: html, text, full: html, text
    56fab5f45c99cd19acd90e3f72e52cc7b7186773 Fri Jan 31 12:03:43 2020 -0800
    rollback change to dbSnp153 filters until code supporting the new way makes it to the RR
  • lines changed 12, context: html, text, full: html, text
    877b51bfa8d145cc7b1f7d4188515400b36b426c Sat Feb 1 02:40:45 2020 -0800
    fixing clinvar track, which is broken right now on the RR, no redmine
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    46235f87089ef4defc1b576e1fad0b2aefa6d05c Wed Jan 29 14:25:10 2020 -0800
    adding wuhCor1 to the build refs #24851
• src/hg/makeDb/trackDb/virus/wuhCor1/description.html
  • lines changed 64, context: html, text, full: html, text
    46235f87089ef4defc1b576e1fad0b2aefa6d05c Wed Jan 29 14:25:10 2020 -0800
    adding wuhCor1 to the build refs #24851
  • lines changed 1, context: html, text, full: html, text
    4944d96d31a51aae682fea89155ab91165b3c9c3 Wed Jan 29 14:44:07 2020 -0800
    eliminate the geneDesc table reference and correct assembly reference for the photo refs #24851
  • lines changed 2, context: html, text, full: html, text
    49bd715fbb08af4f471db7ada3ff12b5a0ee6f26 Fri Jan 31 16:44:29 2020 -0800
    Updating the NCBI Genome ID for wuhCor1, refs #24851
• src/hg/makeDb/trackDb/virus/wuhCor1/gap.html
  • lines changed 28, context: html, text, full: html, text
    46235f87089ef4defc1b576e1fad0b2aefa6d05c Wed Jan 29 14:25:10 2020 -0800
    adding wuhCor1 to the build refs #24851
• src/hg/makeDb/trackDb/virus/wuhCor1/gold.html
  • lines changed 33, context: html, text, full: html, text
    46235f87089ef4defc1b576e1fad0b2aefa6d05c Wed Jan 29 14:25:10 2020 -0800
    adding wuhCor1 to the build refs #24851
• src/hg/makeDb/trackDb/virus/wuhCor1/ncbiGene.html
  • lines changed 19, context: html, text, full: html, text
    fc0692549ede8a7104352ad93ab25eb5d9cec1f6 Fri Jan 31 10:35:01 2020 -0800
    Adding the NCBI Gene track descripiton page. Copied over from the hub version of wuhCor1, refs #24851
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
  • lines changed 26, context: html, text, full: html, text
    46235f87089ef4defc1b576e1fad0b2aefa6d05c Wed Jan 29 14:25:10 2020 -0800
    adding wuhCor1 to the build refs #24851
  • lines changed 2, context: html, text, full: html, text
    4944d96d31a51aae682fea89155ab91165b3c9c3 Wed Jan 29 14:44:07 2020 -0800
    eliminate the geneDesc table reference and correct assembly reference for the photo refs #24851
• src/hg/utils/automation/doAssemblyHub.pl
  • lines changed 10, context: html, text, full: html, text
    623b6e9bb69c43d27321823c079d9367582c75e9 Thu Jan 30 17:19:40 2020 -0800
    add rmskSpecies argument and protect against empty xenoRefGene result refs #23891
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 15, context: html, text, full: html, text
    a87c21c0843e05386bc8539b11305e8aa0439a44 Thu Jan 30 17:21:01 2020 -0800
    verify all required input files are available refs #23891
• src/hg/utils/automation/doRepeatMasker.pl
  • lines changed 4, context: html, text, full: html, text
    2e901bb19e96fbe3fe8bb9706cf528a20ed2477d Thu Jan 30 17:20:19 2020 -0800
    protect against empty nestedRepeats result refs #23891
• src/hg/utils/automation/doSimpleRepeat.pl
  • lines changed 2, context: html, text, full: html, text
    dafc38a60fa78a7a14bfaf05905e2190da48a386 Wed Jan 29 12:17:10 2020 -0800
    correctly avoid trying to remove something that does not exist refs #24851
  • lines changed 12, context: html, text, full: html, text
    137d847d5d74037f32026ad75a55d219c2abbb1f Thu Jan 30 17:21:31 2020 -0800
    protect against empty result refs #23891
• src/hg/utils/automation/doXenoRefGene.pl
  • lines changed 16, context: html, text, full: html, text
    04737fb7f583ed3168dc5594e0cb8403efccd911 Thu Jan 30 17:18:50 2020 -0800
    protect against zero results refs #23891
• src/hg/utils/automation/makeDownloads.pl
  • lines changed 15, context: html, text, full: html, text
    a59176fe95d3fc8f34a2988f6086f33da509925d Tue Jan 28 14:19:33 2020 -0800
    adding legal statement to liftOver/README.txt file no redmine
• src/hg/utils/automation/makeGenomeDb.pl
  • lines changed 19, context: html, text, full: html, text
    8bbc807db3bfb9774c93264c0167ac129239b624 Wed Jan 29 11:32:51 2020 -0800
    not all NCBI fields may be defined refs #24851
• src/hg/utils/hubClone/hubClone.c
  • lines changed 6, context: html, text, full: html, text
    79bdb4a22380475a4ae7697a8045fff7fe543e33 Thu Jan 30 17:51:14 2020 -0800
    Making hubClone use the udcCache specified in ~/.hg.conf if it's set instead of the udc default /tmp/udcCache location, refs Jorge email
  • lines changed 47, context: html, text, full: html, text
    5fb174c9dcf6926682b293c420406d0c2e5cf4a3 Fri Jan 31 09:15:12 2020 -0800
    Make hubClone use pipeline functions to call wget
• src/hg/utils/otto/clinVarToBed
  • lines changed 610, context: html, text, full: html, text
    e95d24a1c7ced8663574b8f90aa255b897c3c423 Fri Jan 31 05:05:55 2020 -0800
    adding a few of our brand new bigBed filters to the clinvar track, refs #24850
  • lines changed 610, context: html, text, full: html, text
    410ca755b501b9c84b618ef8e49b9208cff3d145 Fri Jan 31 05:40:19 2020 -0800
    oops, previous commit was into wrong directory
• src/hg/utils/otto/clinvar.as
  • lines changed 39, context: html, text, full: html, text
    e95d24a1c7ced8663574b8f90aa255b897c3c423 Fri Jan 31 05:05:55 2020 -0800
    adding a few of our brand new bigBed filters to the clinvar track, refs #24850
  • lines changed 39, context: html, text, full: html, text
    410ca755b501b9c84b618ef8e49b9208cff3d145 Fri Jan 31 05:40:19 2020 -0800
    oops, previous commit was into wrong directory
• src/hg/utils/otto/clinvar/clinVarToBed
  • lines changed 63, context: html, text, full: html, text
    410ca755b501b9c84b618ef8e49b9208cff3d145 Fri Jan 31 05:40:19 2020 -0800
    oops, previous commit was into wrong directory
• src/hg/utils/otto/clinvar/clinvar.as
  • lines changed 3, context: html, text, full: html, text
    410ca755b501b9c84b618ef8e49b9208cff3d145 Fri Jan 31 05:40:19 2020 -0800
    oops, previous commit was into wrong directory
• src/hg/utils/refSeqGet/tests/expected/versionedListTest.gp
  • lines changed 1, context: html, text, full: html, text
    8e05bdd7afe639f0d0d7b4a2562b5f4da1792669 Wed Jan 29 10:16:33 2020 -0800
    fixed test failure due to RefSeq being updated in database
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    d662e218c88850212186908ec099eb3ca28bef54 Wed Jan 29 11:07:53 2020 -0800
    Bumping version number in refSeqGet test
• src/hg/utils/refSeqGet/tests/expected/versionedListTest.meta
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    8e05bdd7afe639f0d0d7b4a2562b5f4da1792669 Wed Jan 29 10:16:33 2020 -0800
    fixed test failure due to RefSeq being updated in database
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    d662e218c88850212186908ec099eb3ca28bef54 Wed Jan 29 11:07:53 2020 -0800
    Bumping version number in refSeqGet test
• src/hg/utils/refSeqGet/tests/expected/versionedListTest.psl
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    8e05bdd7afe639f0d0d7b4a2562b5f4da1792669 Wed Jan 29 10:16:33 2020 -0800
    fixed test failure due to RefSeq being updated in database
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    d662e218c88850212186908ec099eb3ca28bef54 Wed Jan 29 11:07:53 2020 -0800
    Bumping version number in refSeqGet test
• src/hg/utils/refSeqGet/tests/expected/versionedListTest.rna.fa
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    8e05bdd7afe639f0d0d7b4a2562b5f4da1792669 Wed Jan 29 10:16:33 2020 -0800
    fixed test failure due to RefSeq being updated in database
  • lines changed 47, context: html, text, full: html, text
    d662e218c88850212186908ec099eb3ca28bef54 Wed Jan 29 11:07:53 2020 -0800
    Bumping version number in refSeqGet test
• src/hg/utils/refSeqGet/tests/input/versioned.acc
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    8e05bdd7afe639f0d0d7b4a2562b5f4da1792669 Wed Jan 29 10:16:33 2020 -0800
    fixed test failure due to RefSeq being updated in database
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    d662e218c88850212186908ec099eb3ca28bef54 Wed Jan 29 11:07:53 2020 -0800
    Bumping version number in refSeqGet test
• src/utils/qa/qaAutoTrack.sh
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    afab2f8e49e5855e3531b34ffc95ea348cedc05b Wed Jan 29 11:24:03 2020 -0800
    Fixing issue with head -1 after the ls causing pipefail. The pipefail trigger was causing the script to exit early and produce no results. The awk command after ls shouldn't have this issue. Also simplifying the method for finding the name of the previous log file. refs #24811
• src/utils/qa/runQaAutoTrack.sh
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    c1e507d2c50b0e3fa885064fb047938a5d67c689 Wed Jan 29 14:50:04 2020 -0800
    Changing method for finding and deleting older log files. no redmine.
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    9756377e6ca94e0ffbf5a838e5b410f301bdda02 Thu Jan 30 10:01:43 2020 -0800
    Removing non-functioning if statement around removing old log files from qaAutoTrack, no redmine.
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    156b1521349ae63210e5a24174ac9ea2f01e7739 Fri Jan 31 09:32:03 2020 -0800
    removing bit about removing older log files since find doesn't look like it worked. will need to find alternative solution, refs #24811
• src/utils/qa/weeklybld/buildEnv.csh
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    eb40277e7807c24c0f69815ea11fe921f170e160 Mon Feb 3 10:06:15 2020 -0800
    v394 preview1

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• files changed: 95