All File Changes

v415_base to v416_preview (2021-05-24 to 2021-06-01) v416

• LICENSE
  • lines changed 25, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/LICENSE
  • lines changed 25, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/blat/LICENSE
  • lines changed 3, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hca/toHca/hcaAffixTsvToTemplate/hcaAffixTsvToTemplate.c
  • lines changed 2, context: html, text, full: html, text
    558767decf16c46bbf8c63ea4b36839fbee66ef8 Thu May 20 11:24:09 2021 -0700
    Fixing error messages per code review #27569
• src/hg/LICENSE
  • lines changed 11, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/autoXml/LICENSE
  • lines changed 2, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/hgPhyloPlace/hgPhyloPlace.c
  • lines changed 25, context: html, text, full: html, text
    327ff85429911eaa58790c850bc5e83ad4b1548f Wed May 26 19:33:36 2021 -0700
    User request (HT Krisandra Allen, WA DOH): add a box in which sequence names/IDs can be pasted instead of uploaded from file.
• src/hg/hgTracks/config.c
  • lines changed 16, context: html, text, full: html, text
    e7b8cf99966c69186d97ad5259811d4172a6ff19 Mon May 24 15:54:42 2021 -0700
    if people aren't compiling with USE_FREETYPE, the default for using freeType fonts should be "off".
• src/hg/hgTracks/hgTracks.c
  • lines changed 5, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
• src/hg/hgc/bigBedClick.c
  • lines changed 54, context: html, text, full: html, text
    46169b41deecd48121198e1911c41dc0a3f96b47 Tue Jan 19 18:12:04 2021 -0800
    Allow variable size data tables on hgc. Allow these tables to be JSON or pipe and semi-colon encoded. Add more support for external data references in bigBeds: allow relevant trackDb settings like skipEmptyFields, allow variable size tables in external files, allow gzip compressed external files.
• src/hg/hgc/bigDbSnpClick.c
  • lines changed 32, context: html, text, full: html, text
    46169b41deecd48121198e1911c41dc0a3f96b47 Tue Jan 19 18:12:04 2021 -0800
    Allow variable size data tables on hgc. Allow these tables to be JSON or pipe and semi-colon encoded. Add more support for external data references in bigBeds: allow relevant trackDb settings like skipEmptyFields, allow variable size tables in external files, allow gzip compressed external files.
• src/hg/hgc/hgc.c
  • lines changed 173, context: html, text, full: html, text
    46169b41deecd48121198e1911c41dc0a3f96b47 Tue Jan 19 18:12:04 2021 -0800
    Allow variable size data tables on hgc. Allow these tables to be JSON or pipe and semi-colon encoded. Add more support for external data references in bigBeds: allow relevant trackDb settings like skipEmptyFields, allow variable size tables in external files, allow gzip compressed external files.
• src/hg/hgc/hgc.h
  • lines changed 26, context: html, text, full: html, text
    46169b41deecd48121198e1911c41dc0a3f96b47 Tue Jan 19 18:12:04 2021 -0800
    Allow variable size data tables on hgc. Allow these tables to be JSON or pipe and semi-colon encoded. Add more support for external data references in bigBeds: allow relevant trackDb settings like skipEmptyFields, allow variable size tables in external files, allow gzip compressed external files.
• src/hg/htdocs/conditions.html
  • lines changed 1, context: html, text, full: html, text
    d5ca45ddca96bf7a9756f5a250dd93d29e87103b Wed May 26 05:38:24 2021 -0700
    fixing conditions of use page, refs #27614
• src/hg/htdocs/goldenPath/help/gbic.html
  • lines changed 10, context: html, text, full: html, text
    e4d6c24a36a8d98fc285930bb3b390b1f77a56d9 Mon May 31 06:42:38 2021 -0700
    update to GBIC docs page, refs #27636
  • lines changed 11, context: html, text, full: html, text
    c84cc71e4df12de399ff9c00bc68faf5b711ed62 Mon May 31 06:54:06 2021 -0700
    another gbic docs update, refs #27636
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 100, context: html, text, full: html, text
    0017a306a24829adbd860a5deb7e9d4ece131df9 Tue Jun 1 09:56:54 2021 -0700
    Updating news for GenArk and Dynamic BLAT, refs #27556
• src/hg/htdocs/images/singleCell/pancreasBaron-fig4a.jpg
  • lines changed 0, context: html, text, full: html, text
    bbd245065e2564d30ad8be0f75d64b13637fc986 Wed May 26 14:46:22 2021 -0700
    Adding images for figure 4a and 5c from paper for pancreasBaron track. refs #26966
• src/hg/htdocs/images/singleCell/pancreasBaron-fig5c.jpg
  • lines changed 0, context: html, text, full: html, text
    bbd245065e2564d30ad8be0f75d64b13637fc986 Wed May 26 14:46:22 2021 -0700
    Adding images for figure 4a and 5c from paper for pancreasBaron track. refs #26966
• src/hg/htdocs/indexNews.html
  • lines changed 14, context: html, text, full: html, text
    0017a306a24829adbd860a5deb7e9d4ece131df9 Tue Jun 1 09:56:54 2021 -0700
    Updating news for GenArk and Dynamic BLAT, refs #27556
• src/hg/htdocs/license/index.html
  • lines changed 31, context: html, text, full: html, text
    636a282f845f2264d0a8d767f039b573f70d22cb Wed May 26 05:30:44 2021 -0700
    clarifying license/index.html a little more, refs #27614
• src/hg/htdocs/style/HGStyle.css
  • lines changed 4, context: html, text, full: html, text
    2b135d602655887e43cae9ecd478d24c8fdf136c Thu May 27 05:33:50 2021 -0700
    centering error message box, refs #27460
  • lines changed 12, context: html, text, full: html, text
    46169b41deecd48121198e1911c41dc0a3f96b47 Tue Jan 19 18:12:04 2021 -0800
    Allow variable size data tables on hgc. Allow these tables to be JSON or pipe and semi-colon encoded. Add more support for external data references in bigBeds: allow relevant trackDb settings like skipEmptyFields, allow variable size tables in external files, allow gzip compressed external files.
• src/hg/hubApi/apiUtils.c
  • lines changed 2, context: html, text, full: html, text
    5906ea1a00349cc4c2827103972f2f7728782823 Tue May 25 09:23:07 2021 -0700
    the omim tables are protected data refs #24208
  • lines changed 4, context: html, text, full: html, text
    47f0e26225da2aa7f9d3f66d645c446a7ce70c5b Tue May 25 09:51:43 2021 -0700
    instead of a blanked elimination of omim table names, check for the noGenome trackDb setting refs #24208
• src/hg/inc/cart.h
  • lines changed 8, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
• src/hg/inc/genePred.h
  • lines changed 6, context: html, text, full: html, text
    b1a9de0fd2ebab6d3caf4197eecc2e75eb74162d Mon May 24 13:53:35 2021 -0700
    Added better handling of GTFs without correct frames on CDS. This also simplified the handling of GTF stop codons
• src/hg/inc/hdb.h
  • lines changed 2, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
• src/hg/inc/trackDb.h
  • lines changed 3, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
• src/hg/js/hgc.js
  • lines changed 168, context: html, text, full: html, text
    46169b41deecd48121198e1911c41dc0a3f96b47 Tue Jan 19 18:12:04 2021 -0800
    Allow variable size data tables on hgc. Allow these tables to be JSON or pipe and semi-colon encoded. Add more support for external data references in bigBeds: allow relevant trackDb settings like skipEmptyFields, allow variable size tables in external files, allow gzip compressed external files.
• src/hg/js/makefile
  • lines changed 1, context: html, text, full: html, text
    46169b41deecd48121198e1911c41dc0a3f96b47 Tue Jan 19 18:12:04 2021 -0800
    Allow variable size data tables on hgc. Allow these tables to be JSON or pipe and semi-colon encoded. Add more support for external data references in bigBeds: allow relevant trackDb settings like skipEmptyFields, allow variable size tables in external files, allow gzip compressed external files.
• src/hg/lib/cart.c
  • lines changed 12, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
• src/hg/lib/cartRewrite.c
  • lines changed 87, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
  • lines changed 93, context: html, text, full: html, text
    0f8419d02e05c36d05ac476a12845bf0e88908d8 Thu May 27 15:35:01 2021 -0700
    changing Daniels snp archive tracks to super tracks
• src/hg/lib/genePred.c
  • lines changed 173, context: html, text, full: html, text
    b1a9de0fd2ebab6d3caf4197eecc2e75eb74162d Mon May 24 13:53:35 2021 -0700
    Added better handling of GTFs without correct frames on CDS. This also simplified the handling of GTF stop codons
• src/hg/lib/hdb.c
  • lines changed 17, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
• src/hg/lib/trackDbCustom.c
  • lines changed 16, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 7, context: html, text, full: html, text
    a30507e45e54053c6762a0daab762fc867cf94dc Tue May 25 14:00:07 2021 -0700
    correcting some broken species names refs #25555
• src/hg/makeDb/doc/canFam3.txt
  • lines changed 17, context: html, text, full: html, text
    2eb7675b61bc79306e6ec54839140d2b40b31bf5 Mon May 24 12:19:29 2021 -0700
    canFam6 dog Tasha browser completed refs #27546
• src/hg/makeDb/doc/canFam4/initialBuild.txt
  • lines changed 17, context: html, text, full: html, text
    2eb7675b61bc79306e6ec54839140d2b40b31bf5 Mon May 24 12:19:29 2021 -0700
    canFam6 dog Tasha browser completed refs #27546
• src/hg/makeDb/doc/canFam5/initialBuild.txt
  • lines changed 17, context: html, text, full: html, text
    2eb7675b61bc79306e6ec54839140d2b40b31bf5 Mon May 24 12:19:29 2021 -0700
    canFam6 dog Tasha browser completed refs #27546
• src/hg/makeDb/doc/canFam6/initialBuild.txt
  • lines changed 92, context: html, text, full: html, text
    2eb7675b61bc79306e6ec54839140d2b40b31bf5 Mon May 24 12:19:29 2021 -0700
    canFam6 dog Tasha browser completed refs #27546
• src/hg/makeDb/doc/hg38/lastzRuns.txt
  • lines changed 74, context: html, text, full: html, text
    2eb7675b61bc79306e6ec54839140d2b40b31bf5 Mon May 24 12:19:29 2021 -0700
    canFam6 dog Tasha browser completed refs #27546
• src/hg/makeDb/doc/hg38/revel.txt
  • lines changed 8, context: html, text, full: html, text
    86033e65a4fc49aa971526bfaa1778844c5a34da Wed May 26 02:05:19 2021 -0700
    adding a preliminary makedoc for revel on hg38, refs #27142, even though the hg38 revel track will not be released, as it is broken (emailed authors)
  • lines changed 9, context: html, text, full: html, text
    8afa5f78425ec225b329db5e1e204384ad0bdfc1 Tue Jun 1 05:06:00 2021 -0700
    adding revel track for hg38, refs #27142
• src/hg/makeDb/doc/mm10.txt
  • lines changed 68, context: html, text, full: html, text
    2eb7675b61bc79306e6ec54839140d2b40b31bf5 Mon May 24 12:19:29 2021 -0700
    canFam6 dog Tasha browser completed refs #27546
• src/hg/makeDb/doc/mm39/lastzRuns.txt
  • lines changed 67, context: html, text, full: html, text
    2eb7675b61bc79306e6ec54839140d2b40b31bf5 Mon May 24 12:19:29 2021 -0700
    canFam6 dog Tasha browser completed refs #27546
• src/hg/makeDb/doc/ncbiRefSeq/ottoNcbiRefSeq.sh
  • lines changed 11, context: html, text, full: html, text
    1390c194b5568d35616a26e699e56a0858e5aad2 Fri May 28 13:43:15 2021 -0700
    otto update scripts runnin in /hive/data/outside/ncbi/genomes/ncbiRefSeq refs #27553
• src/hg/makeDb/doc/ncbiRefSeq/prevHg19.sum
  • lines changed 1, context: html, text, full: html, text
    1390c194b5568d35616a26e699e56a0858e5aad2 Fri May 28 13:43:15 2021 -0700
    otto update scripts runnin in /hive/data/outside/ncbi/genomes/ncbiRefSeq refs #27553
• src/hg/makeDb/doc/ncbiRefSeq/prevHg38.sum
  • lines changed 1, context: html, text, full: html, text
    1390c194b5568d35616a26e699e56a0858e5aad2 Fri May 28 13:43:15 2021 -0700
    otto update scripts runnin in /hive/data/outside/ncbi/genomes/ncbiRefSeq refs #27553
• src/hg/makeDb/doc/ncbiRefSeq/prevMm10.sum
  • lines changed 1, context: html, text, full: html, text
    1390c194b5568d35616a26e699e56a0858e5aad2 Fri May 28 13:43:15 2021 -0700
    otto update scripts runnin in /hive/data/outside/ncbi/genomes/ncbiRefSeq refs #27553
• src/hg/makeDb/doc/ncbiRefSeq/prevMm39.sum
  • lines changed 1, context: html, text, full: html, text
    1390c194b5568d35616a26e699e56a0858e5aad2 Fri May 28 13:43:15 2021 -0700
    otto update scripts runnin in /hive/data/outside/ncbi/genomes/ncbiRefSeq refs #27553
• src/hg/makeDb/doc/ncbiRefSeq/runHg19.sh
  • lines changed 17, context: html, text, full: html, text
    1390c194b5568d35616a26e699e56a0858e5aad2 Fri May 28 13:43:15 2021 -0700
    otto update scripts runnin in /hive/data/outside/ncbi/genomes/ncbiRefSeq refs #27553
• src/hg/makeDb/doc/ncbiRefSeq/runHg38.sh
  • lines changed 17, context: html, text, full: html, text
    1390c194b5568d35616a26e699e56a0858e5aad2 Fri May 28 13:43:15 2021 -0700
    otto update scripts runnin in /hive/data/outside/ncbi/genomes/ncbiRefSeq refs #27553
• src/hg/makeDb/doc/ncbiRefSeq/runMm10.sh
  • lines changed 17, context: html, text, full: html, text
    1390c194b5568d35616a26e699e56a0858e5aad2 Fri May 28 13:43:15 2021 -0700
    otto update scripts runnin in /hive/data/outside/ncbi/genomes/ncbiRefSeq refs #27553
• src/hg/makeDb/doc/ncbiRefSeq/runMm39.sh
  • lines changed 17, context: html, text, full: html, text
    1390c194b5568d35616a26e699e56a0858e5aad2 Fri May 28 13:43:15 2021 -0700
    otto update scripts runnin in /hive/data/outside/ncbi/genomes/ncbiRefSeq refs #27553
• src/hg/makeDb/doc/ncbiRefSeq/runUcscDb.sh
  • lines changed 43, context: html, text, full: html, text
    1390c194b5568d35616a26e699e56a0858e5aad2 Fri May 28 13:43:15 2021 -0700
    otto update scripts runnin in /hive/data/outside/ncbi/genomes/ncbiRefSeq refs #27553
• src/hg/makeDb/doc/wuhCor1/cd8Escape.txt
  • lines changed 6, context: html, text, full: html, text
    b5c7a5e272435eae70479a211b22626897e81edc Thu May 27 07:49:34 2021 -0700
    making cd8escape track, refs #27629
• src/hg/makeDb/hgTrackDb/hgTrackDb.c
  • lines changed 22, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
  • lines changed 5, context: html, text, full: html, text
    9fd216eead545fa281a34a20561eb8df1c8c44f6 Fri May 28 09:52:53 2021 -0700
    make adding the cartVersion pseudo-track an optional thing
• src/hg/makeDb/revel/revelToWig-hg38.py
  • lines changed 115, context: html, text, full: html, text
    8afa5f78425ec225b329db5e1e204384ad0bdfc1 Tue Jun 1 05:06:00 2021 -0700
    adding revel track for hg38, refs #27142
• src/hg/makeDb/scripts/cd8Escape/escape_mutants.as
  • lines changed 18, context: html, text, full: html, text
    b5c7a5e272435eae70479a211b22626897e81edc Thu May 27 07:49:34 2021 -0700
    making cd8escape track, refs #27629
• src/hg/makeDb/scripts/cd8Escape/process_epitopes.py
  • lines changed 195, context: html, text, full: html, text
    b5c7a5e272435eae70479a211b22626897e81edc Thu May 27 07:49:34 2021 -0700
    making cd8escape track, refs #27629
• src/hg/makeDb/trackDb/cpgIslandSuper.html
  • lines changed 11, context: html, text, full: html, text
    8105a202940b970cb7daee5097013e5f3b655c12 Thu May 27 15:56:19 2021 -0700
    Adding a data access section to the cpgIslandSuper track, refs #27584
• src/hg/makeDb/trackDb/human/caddSuper.html
  • lines changed 1, context: html, text, full: html, text
    05755fd01bd7e1f46eb8be2a6587beb20f9561aa Mon May 24 13:04:54 2021 -0700
    fixed typo
• src/hg/makeDb/trackDb/human/chainNetPlacental.ra
  • lines changed 36, context: html, text, full: html, text
    06f137f0b7d49def1d0690602cc10a6ad91eb083 Mon May 24 13:32:31 2021 -0700
    adding canFam6 chainNet definitions refs #27546
• src/hg/makeDb/trackDb/human/hg19/dbSnpArchiveHg19.ra
  • lines changed 2, context: html, text, full: html, text
    0f8419d02e05c36d05ac476a12845bf0e88908d8 Thu May 27 15:35:01 2021 -0700
    changing Daniels snp archive tracks to super tracks
• src/hg/makeDb/trackDb/human/hg19/gnomadPLI.html
  • lines changed 4, context: html, text, full: html, text
    038e9e21f3daac94fa5a12d0874eb3f4315d193c Tue May 25 13:51:27 2021 -0700
    Feedback from CR, refs #27606
• src/hg/makeDb/trackDb/human/hg38/dbSnpArchiveHg38.ra
  • lines changed 2, context: html, text, full: html, text
    0f8419d02e05c36d05ac476a12845bf0e88908d8 Thu May 27 15:35:01 2021 -0700
    changing Daniels snp archive tracks to super tracks
• src/hg/makeDb/trackDb/human/hg38/dbSnpOldHg38.ra
  • lines changed 1, context: html, text, full: html, text
    0f8419d02e05c36d05ac476a12845bf0e88908d8 Thu May 27 15:35:01 2021 -0700
    changing Daniels snp archive tracks to super tracks
• src/hg/makeDb/trackDb/human/hg38/gnomad.ra
  • lines changed 33, context: html, text, full: html, text
    46169b41deecd48121198e1911c41dc0a3f96b47 Tue Jan 19 18:12:04 2021 -0800
    Allow variable size data tables on hgc. Allow these tables to be JSON or pipe and semi-colon encoded. Add more support for external data references in bigBeds: allow relevant trackDb settings like skipEmptyFields, allow variable size tables in external files, allow gzip compressed external files.
• src/hg/makeDb/trackDb/human/hg38/liverMacParland.insert.html
  • lines changed 0, context: html, text, full: html, text
    b8e5a771644ff912890f3b4c56f3998653c5b094 Mon May 24 10:47:23 2021 -0700
    Pushing out liverMacParland insert page. refs #26970
• src/hg/makeDb/trackDb/human/hg38/liverMacParland.ra
  • lines changed 4, context: html, text, full: html, text
    c334e034ba5a88750f68a18192dfb3f0d4425939 Thu May 27 11:34:05 2021 -0700
    Added html declarations for subtracks. refs #26970
  • lines changed 3, context: html, text, full: html, text
    efc1ae786f9ebf38cbaaf929397852a8817eb737 Tue Jun 1 07:18:56 2021 -0700
    Added release alpha tags to all track stanzas. refs #26970
• src/hg/makeDb/trackDb/human/hg38/liverMacParlandBroadCellType.insert.html
  • lines changed 2, context: html, text, full: html, text
    70afc297fb95351d75878b65fc46f4da48038e2e Thu May 27 11:46:48 2021 -0700
    Adding insert page for liverMacParlandBroadCellType track. refs #26966
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 4, context: html, text, full: html, text
    480b442228c96496bd399c8c63d7e23aebc4eb15 Tue Jun 1 05:18:42 2021 -0700
    adding pennanticon for revel track on hg38, refs #27142
• src/hg/makeDb/trackDb/human/revel.html
  • lines changed 19, context: html, text, full: html, text
    8afa5f78425ec225b329db5e1e204384ad0bdfc1 Tue Jun 1 05:06:00 2021 -0700
    adding revel track for hg38, refs #27142
• src/hg/makeDb/trackDb/human/revel.ra
  • lines changed 7, context: html, text, full: html, text
    8afa5f78425ec225b329db5e1e204384ad0bdfc1 Tue Jun 1 05:06:00 2021 -0700
    adding revel track for hg38, refs #27142
• src/hg/makeDb/trackDb/mouse/mm10/dbSnpArchiveMm10.ra
  • lines changed 2, context: html, text, full: html, text
    0f8419d02e05c36d05ac476a12845bf0e88908d8 Thu May 27 15:35:01 2021 -0700
    changing Daniels snp archive tracks to super tracks
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.placentalsChainNet.ra
  • lines changed 23, context: html, text, full: html, text
    06f137f0b7d49def1d0690602cc10a6ad91eb083 Mon May 24 13:32:31 2021 -0700
    adding canFam6 chainNet definitions refs #27546
• src/hg/makeDb/trackDb/mouse/mm39/trackDb.chainNet.ra
  • lines changed 19, context: html, text, full: html, text
    06f137f0b7d49def1d0690602cc10a6ad91eb083 Mon May 24 13:32:31 2021 -0700
    adding canFam6 chainNet definitions refs #27546
  • lines changed 19, context: html, text, full: html, text
    91847e988b110028fedd701470e616f441f8fcd3 Mon May 24 14:05:11 2021 -0700
    adding in canFam6 chainNet RBest and SynNet definitions refs #27546
• src/hg/makeDb/trackDb/mouse/mm39/trackDb.rbestNet.ra
  • lines changed 37, context: html, text, full: html, text
    91847e988b110028fedd701470e616f441f8fcd3 Mon May 24 14:05:11 2021 -0700
    adding in canFam6 chainNet RBest and SynNet definitions refs #27546
• src/hg/makeDb/trackDb/mouse/mm39/trackDb.syntenicNet.ra
  • lines changed 37, context: html, text, full: html, text
    91847e988b110028fedd701470e616f441f8fcd3 Mon May 24 14:05:11 2021 -0700
    adding in canFam6 chainNet RBest and SynNet definitions refs #27546
• src/hg/makeDb/trackDb/relatedTracks.ra
  • lines changed 5, context: html, text, full: html, text
    8afa5f78425ec225b329db5e1e204384ad0bdfc1 Tue Jun 1 05:06:00 2021 -0700
    adding revel track for hg38, refs #27142
  • lines changed 1, context: html, text, full: html, text
    480b442228c96496bd399c8c63d7e23aebc4eb15 Tue Jun 1 05:18:42 2021 -0700
    adding pennanticon for revel track on hg38, refs #27142
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
  • lines changed 1, context: html, text, full: html, text
    46169b41deecd48121198e1911c41dc0a3f96b47 Tue Jan 19 18:12:04 2021 -0800
    Allow variable size data tables on hgc. Allow these tables to be JSON or pipe and semi-colon encoded. Add more support for external data references in bigBeds: allow relevant trackDb settings like skipEmptyFields, allow variable size tables in external files, allow gzip compressed external files.
• src/hg/makeDb/trackDb/trackDb.chainNet.mammal.ra
  • lines changed 60, context: html, text, full: html, text
    06f137f0b7d49def1d0690602cc10a6ad91eb083 Mon May 24 13:32:31 2021 -0700
    adding canFam6 chainNet definitions refs #27546
• src/hg/makeDb/trackDb/trackDb.transMap.ra
  • lines changed 5, context: html, text, full: html, text
    0aa35a82784e4be65d90c63b99980963619361dc Fri May 7 16:49:52 2021 -0700
    Fixing typo in longLabel for v6 refs #27444
• src/hg/makeDb/trackDb/virus/wuhCor1/cd8escape.html
  • lines changed 33, context: html, text, full: html, text
    78e3ea8fd54a27e5813f92c18d025d744dc07fe0 Fri May 28 16:08:22 2021 -0700
    Adding missing desc page refs #27629
• src/hg/makeDb/trackDb/virus/wuhCor1/phyloGenes.html
  • lines changed 37, context: html, text, full: html, text
    b8199c996bd6603e6f9e43c8661134532032f4fa Tue Jun 1 02:41:14 2021 -0700
    adding phylocsf track, refs #25946
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
  • lines changed 49, context: html, text, full: html, text
    b5c7a5e272435eae70479a211b22626897e81edc Thu May 27 07:49:34 2021 -0700
    making cd8escape track, refs #27629
• src/hg/utils/automation/EnsGeneAutomate.pm
  • lines changed 1697, context: html, text, full: html, text
    c7c0c4e70fbaac3739bca7a5d2c916a95c98155f Mon May 24 14:26:41 2021 -0700
    added version 104 definitions refs #27616
• src/hg/utils/automation/doCrispr.pl
  • lines changed 22, context: html, text, full: html, text
    eaea1cfa2424b5d3754e0a50df60fa53c5074125 Mon May 24 10:24:49 2021 -0700
    better cleaning and do not load up the Ranges table refs #27546
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 36, context: html, text, full: html, text
    ba856026204f578954c3cd7468c26d173e66d58f Fri May 28 11:37:58 2021 -0700
    correctly load RefSeqSelect table and add loading of RefSeqHgmd table for hg19 and hg38 refs #27575
• src/hg/utils/faToVcf/faToVcf.c
  • lines changed 8, context: html, text, full: html, text
    9da4f41aff8bc9265c4538a3af39736faed03d51 Wed May 26 19:34:38 2021 -0700
    Added -minAf (alt allele frequency ignoring N bases).
• src/hg/utils/gtfToGenePred/gtfToGenePred.c
  • lines changed 3, context: html, text, full: html, text
    b1a9de0fd2ebab6d3caf4197eecc2e75eb74162d Mon May 24 13:53:35 2021 -0700
    Added better handling of GTFs without correct frames on CDS. This also simplified the handling of GTF stop codons
• src/hg/utils/gtfToGenePred/tests/expected/noFrame.gp
  • lines changed 8, context: html, text, full: html, text
    b1a9de0fd2ebab6d3caf4197eecc2e75eb74162d Mon May 24 13:53:35 2021 -0700
    Added better handling of GTFs without correct frames on CDS. This also simplified the handling of GTF stop codons
• src/hg/utils/gtfToGenePred/tests/expected/noFrame.info
  • lines changed 9, context: html, text, full: html, text
    b1a9de0fd2ebab6d3caf4197eecc2e75eb74162d Mon May 24 13:53:35 2021 -0700
    Added better handling of GTFs without correct frames on CDS. This also simplified the handling of GTF stop codons
• src/hg/utils/gtfToGenePred/tests/input/noFrame.gtf
  • lines changed 122, context: html, text, full: html, text
    b1a9de0fd2ebab6d3caf4197eecc2e75eb74162d Mon May 24 13:53:35 2021 -0700
    Added better handling of GTFs without correct frames on CDS. This also simplified the handling of GTF stop codons
• src/hg/utils/gtfToGenePred/tests/makefile
  • lines changed 10, context: html, text, full: html, text
    b1a9de0fd2ebab6d3caf4197eecc2e75eb74162d Mon May 24 13:53:35 2021 -0700
    Added better handling of GTFs without correct frames on CDS. This also simplified the handling of GTF stop codons
• src/hg/utils/otto/sarscov2phylo/bioSampleTextToTab.pl
  • lines changed 3, context: html, text, full: html, text
    d5938e92fec0038d9874c8edf92ba60bc770f4a8 Mon May 24 09:57:40 2021 -0700
    Handle Biosample keyword set to empty string.
• src/hg/utils/otto/sarscov2phylo/getNcbi.sh
  • lines changed 23, context: html, text, full: html, text
    9875f6c8af94b0f0fcdc5e496515438e6af478b5 Mon May 24 09:59:55 2021 -0700
    Add back -x since there have been so many cron failures. Parallelize re-running of pangolin on all sequences (necessary when a new version of pangolin is released).
• src/hg/utils/otto/sarscov2phylo/updateIdMapping.sh
  • lines changed 8, context: html, text, full: html, text
    95c23a8a25292bec7fd5c853412f0d04d2d44145 Mon May 24 10:03:07 2021 -0700
    Preserve older mappings in the case of duplicates -- but allow GenBank dot-version updates. Also, subColumn is way faster than sed.
• src/hg/utils/otto/sarscov2phylo/updatePublic.sh
  • lines changed 10, context: html, text, full: html, text
    01388e26d682bc9c0f3b2cf27ae25ff989568e21 Mon May 24 10:01:27 2021 -0700
    Set prevDate in this script instead of requiring it from caller.
• src/hg/utils/pslLiftSubrangeBlat/makefile
  • lines changed 12, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/pslLiftSubrangeBlat.c
  • lines changed 133, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/.gitignore
  • lines changed 1, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/expected/qSubRangeTest.psl
  • lines changed 4, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/expected/qtSubRangeTest.psl
  • lines changed 3, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/expected/tSubRangeTest.psl
  • lines changed 4, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/qSubrange.psl
  • lines changed 4, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/qSubrange.qsizes
  • lines changed 1, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.psl
  • lines changed 3, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.qsizes
  • lines changed 1, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.sizes
  • lines changed 2, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/tSubrange.psl
  • lines changed 4, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/input/tSubrange.tsizes
  • lines changed 1, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/pslLiftSubrangeBlat/tests/makefile
  • lines changed 31, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/makefile
  • lines changed 7, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/raRecord.c
  • lines changed 185, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/raRecord.h
  • lines changed 54, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/raSqlQuery.c
  • lines changed 622, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/test.ra
  • lines changed 14, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/raSqlQuery/test2.ra
  • lines changed 20, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/makefile
  • lines changed 7, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/scaffoldFaToAgp.c
  • lines changed 213, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/.gitignore
  • lines changed 1, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/runtest
  • lines changed 15, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/test.agp.gold
  • lines changed 5, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/test.fa
  • lines changed 6, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/test.gap.gold
  • lines changed 2, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/hg/utils/scaffoldFaToAgp/test/test.lft.gold
  • lines changed 5, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/inc/common.mk
  • lines changed 10, context: html, text, full: html, text
    8fff967390b185e152a6faf2a7335e5db23a9ff7 Tue May 25 14:27:48 2021 -0700
    use the freetype configuration utility to decide whether or not to use it.
• src/inc/regexHelper.h
  • lines changed 2, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
• src/jkOwnLib/LICENSE
  • lines changed 6, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/lib/freeType.c
  • lines changed 3, context: html, text, full: html, text
    1b29fe593f199cf98dfe20228ddc158d806f3a24 Tue May 25 17:01:43 2021 -0700
    Make error message more helpful when freeType is requested, but isn't compiled in
• src/lib/matrixMarket.c
  • lines changed 11, context: html, text, full: html, text
    1f36dac15fb404318112d4c3271d4b14eba70223 Mon May 24 17:35:05 2021 -0700
    Making library tolerate extra lines that start with % in matrix market.
• src/lib/regexHelper.c
  • lines changed 6, context: html, text, full: html, text
    6629bda6c730982c3e4602ec78ff3b0cbf701c61 Tue May 25 17:31:38 2021 -0700
    implement cart editing. Needs doc. ;-)
• src/optimalLeaf/LICENSE
  • lines changed 4, context: html, text, full: html, text
    86033e65a4fc49aa971526bfaa1778844c5a34da Wed May 26 02:05:19 2021 -0700
    adding a preliminary makedoc for revel on hg38, refs #27142, even though the hg38 revel track will not be released, as it is broken (emailed authors)
• src/product/ex.hg.conf
  • lines changed 12, context: html, text, full: html, text
    d78441779ba20c7b455b086247fd4c35e5e24a7a Wed May 26 03:26:41 2021 -0700
    adding docs for tableList, refs #27390
• src/tabFile/LICENSE
  • lines changed 2, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/tagStorm/LICENSE
  • lines changed 2, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/makefile
  • lines changed 1, context: html, text, full: html, text
    2805e576864fdec1a250b9c5c2a69809f9bbd80c Mon May 24 17:32:38 2021 -0700
    Adding matrixMarketToTsv to parent makefile
  • lines changed 3, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/matrixClusterColumns/matrixClusterColumns.c
  • lines changed 6, context: html, text, full: html, text
    b7250793caf3c402744e5facdeaa2dc37479f67e Wed May 19 11:27:13 2021 -0700
    Removing docs about matrix market support, which is just a dream at the moment.
• src/utils/matrixMarketToTsv/makefile
  • lines changed 3, context: html, text, full: html, text
    69bc117defcc4d25684b377b8733a5db6d067425 Mon May 24 16:11:39 2021 -0700
    First cut of a utility to convert matrixMarket format matrices to tsv format.
  • lines changed 1, context: html, text, full: html, text
    4eff628b14fb39cf753d251ccc7d9844d2879a5b Mon May 24 17:28:35 2021 -0700
    Adding test set
• src/utils/matrixMarketToTsv/matrixMarketToTsv.c
  • lines changed 98, context: html, text, full: html, text
    69bc117defcc4d25684b377b8733a5db6d067425 Mon May 24 16:11:39 2021 -0700
    First cut of a utility to convert matrixMarket format matrices to tsv format.
  • lines changed 9, context: html, text, full: html, text
    d18a8487b9078785b90e331bf388e0fcbff3d181 Mon May 24 17:29:24 2021 -0700
    Cleaning up diagnostic/verbose output
• src/utils/matrixMarketToTsv/tests/expected.tsv
  • lines changed 6, context: html, text, full: html, text
    4eff628b14fb39cf753d251ccc7d9844d2879a5b Mon May 24 17:28:35 2021 -0700
    Adding test set
• src/utils/matrixMarketToTsv/tests/genes.lst
  • lines changed 5, context: html, text, full: html, text
    4eff628b14fb39cf753d251ccc7d9844d2879a5b Mon May 24 17:28:35 2021 -0700
    Adding test set
• src/utils/matrixMarketToTsv/tests/in.mtx
  • lines changed 6, context: html, text, full: html, text
    4eff628b14fb39cf753d251ccc7d9844d2879a5b Mon May 24 17:28:35 2021 -0700
    Adding test set
• src/utils/matrixMarketToTsv/tests/makefile
  • lines changed 3, context: html, text, full: html, text
    4eff628b14fb39cf753d251ccc7d9844d2879a5b Mon May 24 17:28:35 2021 -0700
    Adding test set
  • lines changed 3, context: html, text, full: html, text
    9d1d39df4cc0762442566c52387ab40d71b105cf Wed May 26 14:42:08 2021 -0700
    Fixed make clean problem. Redmine #27600
• src/utils/matrixMarketToTsv/tests/samples.lst
  • lines changed 10, context: html, text, full: html, text
    4eff628b14fb39cf753d251ccc7d9844d2879a5b Mon May 24 17:28:35 2021 -0700
    Adding test set
• src/utils/pslLiftSubrangeBlat/makefile
  • lines changed 12, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/pslLiftSubrangeBlat.c
  • lines changed 133, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/.gitignore
  • lines changed 1, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/expected/qSubRangeTest.psl
  • lines changed 4, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/expected/qtSubRangeTest.psl
  • lines changed 3, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/expected/tSubRangeTest.psl
  • lines changed 4, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/qSubrange.psl
  • lines changed 4, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/qSubrange.qsizes
  • lines changed 1, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.psl
  • lines changed 3, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.qsizes
  • lines changed 1, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/qtSubrange.sizes
  • lines changed 2, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/tSubrange.psl
  • lines changed 4, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/input/tSubrange.tsizes
  • lines changed 1, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/pslLiftSubrangeBlat/tests/makefile
  • lines changed 31, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    f8e87fe12ad2a231840292768d8844744d6229e7 Tue Jun 1 10:04:01 2021 -0700
    v416 preview1, refs #TICKETNUM
• src/utils/raSqlQuery/makefile
  • lines changed 7, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/raSqlQuery/raRecord.c
  • lines changed 185, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/raSqlQuery/raRecord.h
  • lines changed 54, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/raSqlQuery/raSqlQuery.c
  • lines changed 622, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/raSqlQuery/test.ra
  • lines changed 14, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/raSqlQuery/test2.ra
  • lines changed 20, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/makefile
  • lines changed 7, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/scaffoldFaToAgp.c
  • lines changed 213, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/.gitignore
  • lines changed 1, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/runtest
  • lines changed 15, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/test.agp.gold
  • lines changed 5, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/test.fa
  • lines changed 6, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/test.gap.gold
  • lines changed 2, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614
• src/utils/scaffoldFaToAgp/test/test.lft.gold
  • lines changed 5, context: html, text, full: html, text
    fcfb73cd2dc944a0a10ef34699dcb0c185ea8e6a Wed May 26 05:12:50 2021 -0700
    Trying to give users a clearer idea how many licenses this repo contains, what is under which license and who to contact to get the license. refs #27614

• lines changed: 7388
• files changed: 186