All File Changes

v424_base to v425_preview (2021-12-06 to 2021-12-13) v425

• .github/ISSUE_TEMPLATE/bug-report-or-other-feedback.md
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    2311a511adc9311bf0b6b06b7eafa753f5021352 Tue Dec 7 06:58:25 2021 -0800
    adding issue template that directs people to our mailing list, refs #28554
• confs/hgwbeta.hg.conf
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    3c730933e4be8e17e5447d8068be9dac7e29bab7 Sun Dec 12 01:11:45 2021 -0800
    Installing updated hg.conf files from UCSC servers
• src/hg/hgTracks/barChartTrack.c
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    a104327804caf55ae00c64765c98a491376b048e Mon Dec 6 09:21:38 2021 -0800
    Increasing size of a static buffer that overflowed while making a label for a big sloppy data set.
• src/hg/hgTracks/bedTrack.c
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    a7ab24571507f19cc40e4ef65800401b43000a0f Mon Dec 6 13:16:27 2021 -0800
    support itemRgb for bigPsl, remove overload of lf->extra field for USE_ITEM_RGB and replace it with a reasonably named field in lf (useItemRbg)
• src/hg/hgTracks/bigBedTrack.c
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    a7ab24571507f19cc40e4ef65800401b43000a0f Mon Dec 6 13:16:27 2021 -0800
    support itemRgb for bigPsl, remove overload of lf->extra field for USE_ITEM_RGB and replace it with a reasonably named field in lf (useItemRbg)
• src/hg/hgTracks/cds.c
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    ecec043d87a5893ac8c47074538bdd9d417aff7f Fri Dec 10 12:55:02 2021 -0800
    fix #28619 with an error message
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    e0b2283ee25ab6e76c2e297f309293736532925f Fri Dec 10 13:17:05 2021 -0800
    oops, put this error message in the wrong place
• src/hg/hgTracks/hgTracks.c
  • lines changed 4, context: html, text, full: html, text
    a7ab24571507f19cc40e4ef65800401b43000a0f Mon Dec 6 13:16:27 2021 -0800
    support itemRgb for bigPsl, remove overload of lf->extra field for USE_ITEM_RGB and replace it with a reasonably named field in lf (useItemRbg)
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    d8c7e807044d5275314f191b9626387d7806f93b Fri Dec 10 16:27:29 2021 -0800
    fixup chromAlias display for GenArk genome with small number of UCSC chrom names refs #28533
• src/hg/hgTracks/hgTracks.h
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    a7ab24571507f19cc40e4ef65800401b43000a0f Mon Dec 6 13:16:27 2021 -0800
    support itemRgb for bigPsl, remove overload of lf->extra field for USE_ITEM_RGB and replace it with a reasonably named field in lf (useItemRbg)
• src/hg/hgTracks/interactTrack.c
  • lines changed 1, context: html, text, full: html, text
    a7ab24571507f19cc40e4ef65800401b43000a0f Mon Dec 6 13:16:27 2021 -0800
    support itemRgb for bigPsl, remove overload of lf->extra field for USE_ITEM_RGB and replace it with a reasonably named field in lf (useItemRbg)
• src/hg/hgTracks/simpleTracks.c
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    a7ab24571507f19cc40e4ef65800401b43000a0f Mon Dec 6 13:16:27 2021 -0800
    support itemRgb for bigPsl, remove overload of lf->extra field for USE_ITEM_RGB and replace it with a reasonably named field in lf (useItemRbg)
• src/hg/hgTracks/wigTrack.c
  • lines changed 35, context: html, text, full: html, text
    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
  • lines changed 252, context: html, text, full: html, text
    447c433324a13653e1760bc7e4d1a854e517a1e6 Mon Dec 13 09:57:45 2021 -0800
    fix mouseovers for logo wiggles
• src/hg/hgTracks/wikiTrack.c
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    a7ab24571507f19cc40e4ef65800401b43000a0f Mon Dec 6 13:16:27 2021 -0800
    support itemRgb for bigPsl, remove overload of lf->extra field for USE_ITEM_RGB and replace it with a reasonably named field in lf (useItemRbg)
• src/hg/hgc/barChartClick.c
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    5bfb32fdfc639f9bffb5435044cef164bdde0b28 Sun Dec 12 08:02:13 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
• src/hg/hgc/facetedBar.c
  • lines changed 1, context: html, text, full: html, text
    70694f5a2017b74955371ca3ff5e9883cc874083 Mon Dec 6 09:23:30 2021 -0800
    Increasing max displayed width of label for a big sloppy data set.
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    c0d821c35b6525c8a81e5cc40020c4c6f9cfe53a Sun Dec 12 08:11:03 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
• src/hg/hgc/hgc.c
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    38b9ede07fb3bfb98c74f611c62146b820747e4a Sat Dec 11 08:32:34 2021 -0800
    check in custom hgc code for support of TOGA gene annotation from Michael Hiller's group
• src/hg/hgc/hgc.h
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    38b9ede07fb3bfb98c74f611c62146b820747e4a Sat Dec 11 08:32:34 2021 -0800
    check in custom hgc code for support of TOGA gene annotation from Michael Hiller's group
• src/hg/hgc/makefile
  • lines changed 1, context: html, text, full: html, text
    38b9ede07fb3bfb98c74f611c62146b820747e4a Sat Dec 11 08:32:34 2021 -0800
    check in custom hgc code for support of TOGA gene annotation from Michael Hiller's group
• src/hg/hgc/togaClick.c
  • lines changed 371, context: html, text, full: html, text
    38b9ede07fb3bfb98c74f611c62146b820747e4a Sat Dec 11 08:32:34 2021 -0800
    check in custom hgc code for support of TOGA gene annotation from Michael Hiller's group
• src/hg/hgc/togaClick.h
  • lines changed 101, context: html, text, full: html, text
    38b9ede07fb3bfb98c74f611c62146b820747e4a Sat Dec 11 08:32:34 2021 -0800
    check in custom hgc code for support of TOGA gene annotation from Michael Hiller's group
• src/hg/htdocs/FAQ/FAQformat.html
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    a8a7928a0e6d1272c417906ef5b96790c13bc8b6 Tue Dec 7 13:08:25 2021 -0800
    Adding RM to FAQ format page, refs #28034
• src/hg/htdocs/goldenPath/help/query.html
  • lines changed 4, context: html, text, full: html, text
    2311a511adc9311bf0b6b06b7eafa753f5021352 Tue Dec 7 06:58:25 2021 -0800
    adding issue template that directs people to our mailing list, refs #28554
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
  • lines changed 3, context: html, text, full: html, text
    c54a5df435217b5c1efec9ddc6db050f90f13a2f Fri Dec 10 11:51:59 2021 -0800
    Documenting the new speciesLabels setting for maf display, refs #28495
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v3.html
  • lines changed 3, context: html, text, full: html, text
    c54a5df435217b5c1efec9ddc6db050f90f13a2f Fri Dec 10 11:51:59 2021 -0800
    Documenting the new speciesLabels setting for maf display, refs #28495
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 7, context: html, text, full: html, text
    c54a5df435217b5c1efec9ddc6db050f90f13a2f Fri Dec 10 11:51:59 2021 -0800
    Documenting the new speciesLabels setting for maf display, refs #28495
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 9, context: html, text, full: html, text
    dd44357d2db08469abbb24dcbfaf9f119143a095 Mon Dec 6 13:40:35 2021 -0800
    Adding second GenArk blog post news refs #27990
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    9d687cb5d3809dcf7e8db5e7efc564720d39557c Wed Dec 8 12:14:10 2021 -0800
    Fixing an anchor on newsarch refs #28599
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    0f0f2fdfa06e902c0718aa2f797c3bbb3a15d174 Fri Dec 10 16:29:37 2021 -0800
    Fixing an accident from cutting & pasting older news item
• src/hg/htdocs/indexNews.html
  • lines changed 13, context: html, text, full: html, text
    dd44357d2db08469abbb24dcbfaf9f119143a095 Mon Dec 6 13:40:35 2021 -0800
    Adding second GenArk blog post news refs #27990
• src/hg/inc/bedCart.h
  • lines changed 3, context: html, text, full: html, text
    a7ab24571507f19cc40e4ef65800401b43000a0f Mon Dec 6 13:16:27 2021 -0800
    support itemRgb for bigPsl, remove overload of lf->extra field for USE_ITEM_RGB and replace it with a reasonably named field in lf (useItemRbg)
• src/hg/inc/facetField.h
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    5bfb32fdfc639f9bffb5435044cef164bdde0b28 Sun Dec 12 08:02:13 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
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    85b93dbee0373fd005f1816c5704b181094c8b99 Sun Dec 12 14:55:09 2021 -0800
    Trimming an unused and useless function.
• src/hg/inc/facetedTable.h
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    5bfb32fdfc639f9bffb5435044cef164bdde0b28 Sun Dec 12 08:02:13 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
• src/hg/inc/hvGfx.h
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    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
• src/hg/inc/tablesTables.h
  • lines changed 1, context: html, text, full: html, text
    5bfb32fdfc639f9bffb5435044cef164bdde0b28 Sun Dec 12 08:02:13 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
• src/hg/lib/barChartUi.c
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    5bfb32fdfc639f9bffb5435044cef164bdde0b28 Sun Dec 12 08:02:13 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
• src/hg/lib/cart.c
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    435ddebcfffecaa6360e8d9524cf7b6e0800909a Tue Dec 7 05:46:03 2021 -0800
    more track docs for the new uniprot track, refs #28560
• src/hg/lib/facetField.c
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    2b7a4a2a57b95e2867dfb651cc9a35c2fa06a503 Mon Dec 6 09:18:42 2021 -0800
    Employing slPairCmpWordsWithEmbeddedNumbers sorting in the faceted table display.
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    5bfb32fdfc639f9bffb5435044cef164bdde0b28 Sun Dec 12 08:02:13 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
  • lines changed 10, context: html, text, full: html, text
    85b93dbee0373fd005f1816c5704b181094c8b99 Sun Dec 12 14:55:09 2021 -0800
    Trimming an unused and useless function.
• src/hg/lib/facetedTable.c
  • lines changed 349, context: html, text, full: html, text
    5bfb32fdfc639f9bffb5435044cef164bdde0b28 Sun Dec 12 08:02:13 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
• src/hg/lib/makefile
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    c84864b72e051835373ceb308f9be9621e40480b Thu Dec 9 16:09:10 2021 -0800
    Remove -fno-common compiler option from library makefiles as common.mk is a more appropriate location so all CGIs and utils can use the option too, refs #28598
• src/hg/lib/tablesTables.c
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    eb73131071efa47e196ca9b2d736d0157ef221fd Mon Dec 6 09:16:47 2021 -0800
    Displaying an n/a rather than the empty string on facets with no data.
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    5bfb32fdfc639f9bffb5435044cef164bdde0b28 Sun Dec 12 08:02:13 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
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    365fbd229ddd9ccd90b74788973cd8f011476954 Sun Dec 12 14:58:01 2021 -0800
    Adding in unmerge buttons to the line with the Clear All button.
• src/hg/makeDb/doc/asmHubs/master.run.list
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    1381d8c0721af93af42eec857abf953c353764c8 Fri Dec 10 14:23:35 2021 -0800
    adding 3 birds for VGP and SK1 yeast per user request refs #38533
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 3, context: html, text, full: html, text
    dc433b9840de8b514247024a9b57109fd68f635d Fri Dec 10 14:32:20 2021 -0800
    adding 3 new birds from VGP project no redmine
• src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv
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    17e0d6daa3a364e32b1d565f49fd3e58ca036ede Fri Dec 10 14:20:35 2021 -0800
    adding GCA_002250225.1_ASM225022v1 bakers yeast SK1 per user request refs #28533
• src/hg/makeDb/doc/hg19.txt
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    143a56b0b44cf95b2168da9782b1517b3b6fd8db Tue Dec 7 12:23:07 2021 -0800
    Updating makeDocs for jaspar 2022 update refs #28322
• src/hg/makeDb/doc/hg38/jaspar.txt
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    143a56b0b44cf95b2168da9782b1517b3b6fd8db Tue Dec 7 12:23:07 2021 -0800
    Updating makeDocs for jaspar 2022 update refs #28322
• src/hg/makeDb/doc/hgFixed.txt
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    851385903f257839da60df1ba89e525360742b4a Wed Dec 8 14:23:24 2021 -0800
    add JASPAR 2022 core non-redundant PWMs to hgFixed
• src/hg/makeDb/doc/mm10.txt
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    143a56b0b44cf95b2168da9782b1517b3b6fd8db Tue Dec 7 12:23:07 2021 -0800
    Updating makeDocs for jaspar 2022 update refs #28322
• src/hg/makeDb/doc/mm39/jaspar.txt
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    143a56b0b44cf95b2168da9782b1517b3b6fd8db Tue Dec 7 12:23:07 2021 -0800
    Updating makeDocs for jaspar 2022 update refs #28322
• src/hg/makeDb/trackDb/human/dbSnp153Composite.html
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    875e9fe8f6fa7f964ca2d9bdd837c5e106c32198 Thu Dec 9 17:10:29 2021 -0800
    Fixed hg38 desc page links, refs #28565
• src/hg/makeDb/trackDb/human/hg38/cons100way.html
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    875e9fe8f6fa7f964ca2d9bdd837c5e106c32198 Thu Dec 9 17:10:29 2021 -0800
    Fixed hg38 desc page links, refs #28565
• src/hg/makeDb/trackDb/human/hg38/encode3.ra
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    1baf207dd7f084809ab571df3b44847139046d9c Fri Dec 10 10:05:05 2021 -0800
    Updated hg38 ENCODE SCREEN cCRE links, refs #28565
• src/hg/makeDb/trackDb/human/hg38/encodeCcreCombined.html
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    1baf207dd7f084809ab571df3b44847139046d9c Fri Dec 10 10:05:05 2021 -0800
    Updated hg38 ENCODE SCREEN cCRE links, refs #28565
• src/hg/makeDb/trackDb/human/hg38/fetalGeneAtlas.ra
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    266bc861495dd8ba2c591847d386350fb0072316 Wed Dec 8 10:45:56 2021 -0800
    Updating cell labels in barChartBars tag for fetalGeneAtlasCellType track.
• src/hg/makeDb/trackDb/human/hg38/singleCellMerged.ra
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    54b381aea479c5f0c0c823786819d16007716962 Mon Dec 6 09:30:11 2021 -0800
    Removing experimental track singleCellMergedUnnormalized
• src/hg/makeDb/trackDb/human/hg38/tabulaSapiens.ra
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    52da57637e0ae543e8edccd79324c6cac9054ac2 Mon Dec 6 09:36:01 2021 -0800
    Updating colors and default visibilities, and facet orders.
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    72d1185bff02347508e63ec4ea96faea740e6bf1 Mon Dec 6 22:01:30 2021 -0800
    Adding tabulaSapiensFullDetails subtrack.
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    60cb9ac8973402e7bccadcb64ecbb630499b4833 Thu Dec 9 17:39:43 2021 -0800
    Adding missing units and metrics. Removing old barChartColors and barCharBars that were commented out.
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    5bfb32fdfc639f9bffb5435044cef164bdde0b28 Sun Dec 12 08:02:13 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
• src/hg/makeDb/trackDb/human/jaspar.ra
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    9aac7e4883f02d3843027025f6724f9fe801ae3f Tue Dec 7 13:54:01 2021 -0800
    Adding labelFields to jaspar for new data format refs #28322
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    e9926517a757263ba112a54d1c6ea3ab603f04a2 Wed Dec 8 12:17:51 2021 -0800
    Adding new martix table reference and changing filter field refs #28322
• src/hg/makeDb/trackDb/human/trackDb.clinvar.ra
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    435ddebcfffecaa6360e8d9524cf7b6e0800909a Tue Dec 7 05:46:03 2021 -0800
    more track docs for the new uniprot track, refs #28560
• src/hg/makeDb/trackDb/mouse/jaspar.ra
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    9aac7e4883f02d3843027025f6724f9fe801ae3f Tue Dec 7 13:54:01 2021 -0800
    Adding labelFields to jaspar for new data format refs #28322
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    e9926517a757263ba112a54d1c6ea3ab603f04a2 Wed Dec 8 12:17:51 2021 -0800
    Adding new martix table reference and changing filter field refs #28322
• src/hg/makeDb/trackDb/mouse/mm10/tabulaMurisSenis.ra
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    493ed2235f5e69093de71aa5b0c1ea2351b552bf Mon Dec 6 09:39:19 2021 -0800
    First cut of tabulaMurisSenis track - 250,000 10x and 80,000 FACS single cell sequences
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    60cb9ac8973402e7bccadcb64ecbb630499b4833 Thu Dec 9 17:39:43 2021 -0800
    Adding missing units and metrics. Removing old barChartColors and barCharBars that were commented out.
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    5bfb32fdfc639f9bffb5435044cef164bdde0b28 Sun Dec 12 08:02:13 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.encode3.ra
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    86c0e21301a2d08b367719b935cd26659189ae41 Fri Dec 10 13:17:11 2021 -0800
    Updated mm10 ENCODE SCREEN cCRE link, refs #28565
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
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    493ed2235f5e69093de71aa5b0c1ea2351b552bf Mon Dec 6 09:39:19 2021 -0800
    First cut of tabulaMurisSenis track - 250,000 10x and 80,000 FACS single cell sequences
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    2b104588a7c8d3ae1ad28e28bcb302093479b11d Sat Dec 11 08:36:53 2021 -0800
    add TOGA annotation track to mm10
• src/hg/makeDb/trackDb/tagTypes.tab
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    a5953c342198962b416240e9e3eb0e68725a254c Wed Dec 1 09:41:05 2021 -0800
    add speciesLabels
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    5bfb32fdfc639f9bffb5435044cef164bdde0b28 Sun Dec 12 08:02:13 2021 -0800
    Implementing barChartMerge trackDb option for faceted bar charts.
• src/hg/makeDb/trackDb/trackDb.ra
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    da96c420715e20881a68bc3c6d5beb0778e96a20 Mon Dec 6 15:35:10 2021 -0800
    adding genes to wuhCor1 defaults and changing alt viz on human No RM
• src/hg/makeDb/trackDb/uniprotAlpha.html
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    435ddebcfffecaa6360e8d9524cf7b6e0800909a Tue Dec 7 05:46:03 2021 -0800
    more track docs for the new uniprot track, refs #28560
• src/hg/makeDb/trackDb/virus/wuhCor1/ncbiGene.ra
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    da96c420715e20881a68bc3c6d5beb0778e96a20 Mon Dec 6 15:35:10 2021 -0800
    adding genes to wuhCor1 defaults and changing alt viz on human No RM
• src/hg/makeDb/trackDb/virus/wuhCor1/strains.ra
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    435ddebcfffecaa6360e8d9524cf7b6e0800909a Tue Dec 7 05:46:03 2021 -0800
    more track docs for the new uniprot track, refs #28560
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.uniprot.ra
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    da96c420715e20881a68bc3c6d5beb0778e96a20 Mon Dec 6 15:35:10 2021 -0800
    adding genes to wuhCor1 defaults and changing alt viz on human No RM
• src/hg/makeDb/trackDb/virus/wuhCor1/variantMuts.ra
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    435ddebcfffecaa6360e8d9524cf7b6e0800909a Tue Dec 7 05:46:03 2021 -0800
    more track docs for the new uniprot track, refs #28560
• src/hg/utils/automation/doAssemblyHub.pl
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    cb9f070d5e860a9ebadd21e975d7f718b79aec8f Mon Dec 6 14:41:51 2021 -0800
    adjusting the cluster for the simple repeats when many small contigs no redmine
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    3b5ca881b4a3a665d84a60f38974090888f08931 Wed Dec 8 15:04:40 2021 -0800
    avoid building blat indexes for genomes that are too large no redmine
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    58e45f0c6f05727b8cf72d21e83925e062297b30 Sat Dec 11 21:55:23 2021 -0800
    avoid running tandemDups on assemblies with more than 100,000 contigs no redmine
• src/hg/utils/automation/doSimpleRepeat.pl
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    3450181d0d4ea0e081016d29b67dcbe3245c5d32 Mon Dec 6 14:40:45 2021 -0800
    attempt to better adjust cluster batch size when many small contigs no redmine
• src/hg/utils/gencodeVersionForGenes/gencodeVersionForGenes.c
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    341852cbba3ee6a1c71edaf8f5dd1286bb8f6e10 Mon Dec 6 09:27:27 2021 -0800
    Added -upperCase option to help deal with case-mangled gene symbols.
• src/hg/utils/otto/clinvar/clinVarToBed
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    0026e52591c39e5a0644b478f8d3f7409b7f9af1 Mon Dec 6 02:48:07 2021 -0800
    fixing clinvar B/P codes back to BN/PG, refs #28562
• src/hg/utils/otto/omim/checkOmimUpload.sh
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    ff131b0e94dd41def8c57977c53a295ec31f266a Mon Dec 6 16:37:57 2021 -0800
    Fix for omimAvSnp check missing updates, no ticket
• src/inc/common.h
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    a310de79beafde036d76654f097af974033828ba Mon Dec 6 09:12:13 2021 -0800
    Adding slPairCmpWordsWithEmbeddedNumbers library routine to support that nice form of sorting in the faceted table display.
• src/inc/memgfx.h
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    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
• src/inc/psGfx.h
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    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
• src/inc/pscmGfx.h
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    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
• src/inc/tokenizer.h
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    45872bfa8b5701e2da983a5052c9f5c18c661621 Thu Dec 9 12:54:18 2021 -0800
    Adding option for tokenizer to handle a pretty good spectrum of two character operations.
• src/inc/vGfx.h
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    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
• src/lib/common.c
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    a310de79beafde036d76654f097af974033828ba Mon Dec 6 09:12:13 2021 -0800
    Adding slPairCmpWordsWithEmbeddedNumbers library routine to support that nice form of sorting in the faceted table display.
• src/lib/fieldedTable.c
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    eef1e6238af422d97be807e0a687e133c98bbd87 Mon Dec 6 09:25:07 2021 -0800
    Employing slPairCmpWordsWithEmbeddedNumbers sorting in the faceted table display.
• src/lib/freeType.c
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    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
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    e4794fcac9e496413c119487338a99b0ff54c68d Wed Dec 8 11:14:47 2021 -0800
    restore character transform to upright after drawing upside down letters
• src/lib/freeType.h
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    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
• src/lib/makefile
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    c84864b72e051835373ceb308f9be9621e40480b Thu Dec 9 16:09:10 2021 -0800
    Remove -fno-common compiler option from library makefiles as common.mk is a more appropriate location so all CGIs and utils can use the option too, refs #28598
• src/lib/memgfx.c
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    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
• src/lib/psGfx.c
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    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
• src/lib/pscmGfx.c
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    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
• src/lib/strex.c
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    5ec42ac16ff4d62a5ca390ba108071d3e4ea53e3 Thu Dec 9 12:58:05 2021 -0800
    Supporting comparison operations.
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    2be851c8acf32ce69189a0d0bae0d81d9523ac5f Thu Dec 9 16:06:58 2021 -0800
    Adding new symbol_id() builtin function.
• src/lib/strex.doc
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    ba5eb47d143f77b6b423bdcf36015a70505d142d Thu Dec 9 12:52:27 2021 -0800
    Documenting comparison operators in strex.
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    2be851c8acf32ce69189a0d0bae0d81d9523ac5f Thu Dec 9 16:06:58 2021 -0800
    Adding new symbol_id() builtin function.
• src/lib/tokenizer.c
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    45872bfa8b5701e2da983a5052c9f5c18c661621 Thu Dec 9 12:54:18 2021 -0800
    Adding option for tokenizer to handle a pretty good spectrum of two character operations.
• src/lib/vGfxPrivate.h
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    5c16e9df442a6a66c91f8cbf52f7543cb9cb4517 Mon Dec 6 16:34:22 2021 -0800
    add new function to the graphics library to put text in a box that is used by the logo function of wiggle draws
• src/tabFile/tabToTabDir/tests/expected/cmp_test.tsv
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    ce96b9825355e2ac032a397c855b768ad7c16f6f Thu Dec 9 12:47:14 2021 -0800
    Adding new test set for comparison operations
• src/tabFile/tabToTabDir/tests/expected/donor.tsv
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    2be851c8acf32ce69189a0d0bae0d81d9523ac5f Thu Dec 9 16:06:58 2021 -0800
    Adding new symbol_id() builtin function.
• src/tabFile/tabToTabDir/tests/input/spec.txt
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    ce96b9825355e2ac032a397c855b768ad7c16f6f Thu Dec 9 12:47:14 2021 -0800
    Adding new test set for comparison operations
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    2be851c8acf32ce69189a0d0bae0d81d9523ac5f Thu Dec 9 16:06:58 2021 -0800
    Adding new symbol_id() builtin function.
• src/utils/qa/weeklybld/buildEnv.csh
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    aef20326fde0808f589235f73338d47ee531581e Mon Dec 13 10:22:02 2021 -0800
    v425 preview1, refs #28521
• src/utils/qa/weeklybld/sendLogEmail.pl
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    a02f8bc17a4552f5b50aefee94ba4910a2b566ec Tue Dec 7 09:11:43 2021 -0800
    Swap out Clay for Ann in build email
• src/utils/qa/whoMadeIt.csh
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    7fd153d503d35bea410bca03a189339ac9e2ba7d Wed Dec 8 11:32:13 2021 -0800
    Adding myself as an alias in whoMadeIt.csh, approved by b0b after talking with him in the office.
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    dfb854ef9fb22061fa07b8901b8ff0c8fc39ab2b Sat Dec 11 13:05:34 2021 -0800
    added rachel to list of aliases
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    8da2539ae98931477fc9c22f484a4f9a07f47c40 Sat Dec 11 13:09:39 2021 -0800
    oops. left off a backslash

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