All File Changes

v472_preview2 to v472_base (2024-09-30 to 2024-10-07) v472

• confs/asia.hg.conf
  • lines changed 6, context: html, text, full: html, text
    641180ca8796b2ecea29edaee9c46ad617a35835 Sun Oct 6 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
  • lines changed 6, context: html, text, full: html, text
    641180ca8796b2ecea29edaee9c46ad617a35835 Sun Oct 6 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/hgwdev.hg.conf
  • lines changed 6, context: html, text, full: html, text
    641180ca8796b2ecea29edaee9c46ad617a35835 Sun Oct 6 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
  • lines changed 6, context: html, text, full: html, text
    641180ca8796b2ecea29edaee9c46ad617a35835 Sun Oct 6 01:11:21 2024 -0700
    Installing updated hg.conf files from UCSC servers
• src/hg/cirm/cdw/README
  • lines changed 7, context: html, text, full: html, text
    ce163cf46702cd8fea306a972ce85ceaff19e41d Mon Sep 30 19:09:53 2024 -0700
    Updating CDW main README and adding install instructions and a script.
• src/hg/cirm/cdw/cdwMakeEnrichments/cdwMakeEnrichments.c
  • lines changed 1, context: html, text, full: html, text
    ab8f6667e2e5c6fe1ee0731781f6efa6aef7cd24 Tue Oct 1 13:56:01 2024 -0700
    Adding fasta to the formats safely ignored.
• src/hg/cirm/cdw/cdwMakeValidFile/cdwMakeValidFile.c
  • lines changed 1, context: html, text, full: html, text
    43427b2c166a11f4adc467d69971fca322a20d3c Tue Oct 1 14:07:24 2024 -0700
    Filling in itemCount for csv files
• src/hg/cirm/cdw/cdwRunDaemon/cdwRunDaemon.c
  • lines changed 63, context: html, text, full: html, text
    fd7300195f18fae0c96a61d4c7ae5b5aaed549c7 Mon Sep 30 19:06:56 2024 -0700
    Removing a fifo that worked better in theory than practice.
• src/hg/cirm/cdw/install/README
  • lines changed 71, context: html, text, full: html, text
    ce163cf46702cd8fea306a972ce85ceaff19e41d Mon Sep 30 19:09:53 2024 -0700
    Updating CDW main README and adding install instructions and a script.
  • lines changed 15, context: html, text, full: html, text
    45d3e9c5ce59d3034e38de40df155c1cf89121a1 Tue Oct 1 14:24:41 2024 -0700
    Adding a few more things to install instructions for cdw.
  • lines changed 7, context: html, text, full: html, text
    8cc9219d0990c270849cba2159a27ad9a95a1f08 Tue Oct 1 17:29:17 2024 -0700
    Adding bits about installing bowtie and indexes. Upping validation threads.
  • lines changed 7, context: html, text, full: html, text
    178eda0f816c2044f1e5f4a87aa890c4c2c115d9 Tue Oct 1 20:08:43 2024 -0700
    Seperating out the user initialization into a script and adding groups to it too.
• src/hg/cirm/cdw/install/initQa
  • lines changed 93, context: html, text, full: html, text
    ce163cf46702cd8fea306a972ce85ceaff19e41d Mon Sep 30 19:09:53 2024 -0700
    Updating CDW main README and adding install instructions and a script.
• src/hg/cirm/cdw/install/initUsersGroups
  • lines changed 15, context: html, text, full: html, text
    178eda0f816c2044f1e5f4a87aa890c4c2c115d9 Tue Oct 1 20:08:43 2024 -0700
    Seperating out the user initialization into a script and adding groups to it too.
• src/hg/cirm/cdw/restartDaemons/psygene-restartDaemons
  • lines changed 9, context: html, text, full: html, text
    fe1e9df6854ee9da3a5d19484d9e1f7df2fc84a0 Tue Oct 1 17:06:41 2024 -0700
    Adding new restart file for psygene server
• src/hg/encode3/encodeDataWarehouse/utils/edwSamRepeatAnalysis/makefile
  • lines changed 1, context: html, text, full: html, text
    618b3d98dc6f334aaa3f287a622e6389edf282ff Mon Sep 30 19:04:19 2024 -0700
    Removing unused library dependency in makefile.
• src/hg/hgGateway/hgGateway.c
  • lines changed 70, context: html, text, full: html, text
    edef1384b0f93fc9c5abebba55ba9d943ab75a06 Mon Sep 30 15:38:18 2024 -0700
    now highlighting GenArk search terms in the results, thank you Angie for that template example, refs #33720
  • lines changed 5, context: html, text, full: html, text
    21f1d2491968cb94da59b177c150c8c93632b1c2 Tue Oct 1 10:53:57 2024 -0700
    show the GCx accession id in the GenArk results refs #33720
• src/hg/hgLiftOver/hgLiftOver.c
  • lines changed 17, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
  • lines changed 2, context: html, text, full: html, text
    a78b9ac5c45442e8abe55148cf9b2dab8df792b3 Thu Oct 3 17:00:26 2024 -0700
    Updating the preserveInput setting name and info on hgLiftOver, refs #28023
• src/hg/hgSession/backup.c
  • lines changed 1, context: html, text, full: html, text
    650de012021ea2efc1e01f8b15c0bead067ca4cc Mon Sep 30 16:06:14 2024 -0700
    Rocky 9 tar now requires the command line option "-34473"before the parameter "." fixes #34473
• src/hg/hgTables/mainPage.c
  • lines changed 8, context: html, text, full: html, text
    77227aac02f85bc432f11c1fc619556936db3a87 Mon Oct 7 09:38:18 2024 -0700
    adding (i) icons to table browser, refs #27619
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 21, context: html, text, full: html, text
    fdf4e8af8c618920909eacdf621fe38e337ea4be Mon Sep 30 17:17:00 2024 -0700
    Announcement for the clinical tutorial, as well as adding the credit to the license page for the icon used. Refs #33485
• src/hg/htdocs/images/clinicalTutorial.png
  • lines changed 0, context: html, text, full: html, text
    fdf4e8af8c618920909eacdf621fe38e337ea4be Mon Sep 30 17:17:00 2024 -0700
    Announcement for the clinical tutorial, as well as adding the credit to the license page for the icon used. Refs #33485
• src/hg/htdocs/images/tutorialImages/downloadCurrentTracks.png
  • lines changed 0, context: html, text, full: html, text
    7460944bd370cdc496909ff572c16102696f09f1 Tue Oct 1 17:09:46 2024 -0700
    Adding an image for the clincical tutorial. (download data in current view), refs #34515
  • lines changed 0, context: html, text, full: html, text
    28ffe000da632eb5a4b40100128d615018a1b014 Tue Oct 1 17:20:43 2024 -0700
    Replacing the image for the clinical tutorial. Accidentally used an image from hgwdev, which showed the NMD track that isn't available on the RR, refs #34515
• src/hg/htdocs/indexNews.html
  • lines changed 13, context: html, text, full: html, text
    fdf4e8af8c618920909eacdf621fe38e337ea4be Mon Sep 30 17:17:00 2024 -0700
    Announcement for the clinical tutorial, as well as adding the credit to the license page for the icon used. Refs #33485
• src/hg/htdocs/license/index.html
  • lines changed 1, context: html, text, full: html, text
    fdf4e8af8c618920909eacdf621fe38e337ea4be Mon Sep 30 17:17:00 2024 -0700
    Announcement for the clinical tutorial, as well as adding the credit to the license page for the icon used. Refs #33485
• src/hg/inc/liftOver.h
  • lines changed 7, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    14e458a2850b153c5abf5c8cc329accdb0047d37 Mon Oct 7 15:09:22 2024 -0700
    New version number v472
• src/hg/js/hgHubConnect.js
  • lines changed 4, context: html, text, full: html, text
    cd9d655961d6f2142350c1415c95fb8191e44b09 Tue Oct 1 12:16:19 2024 -0700
    Save most recently clicked hgHubConnect tab to localStorage because jquery-ui upgrade removed cookie option, refs #34538
• src/hg/js/hgTracks.js
  • lines changed 6, context: html, text, full: html, text
    16688d8516353f5230f11de5e5397f728b78643c Wed Oct 2 02:45:22 2024 -0700
    fixing move to bottom not working after cart reset, refs #23793
  • lines changed 2, context: html, text, full: html, text
    0b7ad07f09aa22820bca7dcfc65ea71813c753a0 Fri Oct 4 05:37:43 2024 -0700
    not hiding ruler track anymore, not placing any track above the ruler track, refs #23793
  • lines changed 14, context: html, text, full: html, text
    3e6f2d19667afbc81cc78d76d4ea08a4540edeed Fri Oct 4 06:02:36 2024 -0700
    only hiding parents when doing "hide all others", refs #23793
• src/hg/js/tutorials/clinicalTutorial.js
  • lines changed 22, context: html, text, full: html, text
    1453fd96b85a3e6ac8da264c8b99fbeb860bed73 Tue Oct 1 17:52:04 2024 -0700
    Adding a step to download the current track data to the clinical tutorial, refs #34515
  • lines changed 1, context: html, text, full: html, text
    fd89d87979e6e6c7cd2277d39f679e4e7ce9c98c Wed Oct 2 15:06:24 2024 -0700
    Fixing a typo Lou found during the live QA demo, refs #34515
• src/hg/lib/hui.c
  • lines changed 1, context: html, text, full: html, text
    0135d37f8158dbff399e0da8764847e82ba3dc40 Fri Oct 4 17:18:31 2024 -0700
    Updating the track colorPicker name, refs #34476
• src/hg/lib/jksql.c
  • lines changed 12, context: html, text, full: html, text
    7d1ff9d4eda3fd50ac1c009204e8c6e3e4ed578b Mon Sep 30 17:59:27 2024 -0700
    make missing database profile error message a bit clearer
• src/hg/lib/liftOver.c
  • lines changed 67, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
  • lines changed 5, context: html, text, full: html, text
    2d6c8b5aa593976bc312cb3111d9d4cd7b46938a Wed Oct 2 09:29:18 2024 -0700
    Position liftovers need to clean up temp files when they're done, refs #28023
• src/hg/lib/sqlProg.c
  • lines changed 2, context: html, text, full: html, text
    7d1ff9d4eda3fd50ac1c009204e8c6e3e4ed578b Mon Sep 30 17:59:27 2024 -0700
    make missing database profile error message a bit clearer
  • lines changed 2, context: html, text, full: html, text
    29dac6bccdd0a78a0805e5a4209379f65484c3d0 Tue Oct 1 03:24:58 2024 -0700
    improving sql profile error message a little, email from Jim
• src/hg/liftOver/liftOver.c
  • lines changed 15, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/bed12Preserve.bed
  • lines changed 2, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/bed3Preserve.bed
  • lines changed 2, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/genePredPreserve.gp
  • lines changed 3, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/gffPreserve.gff
  • lines changed 6, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/gtfPreserve.gtf
  • lines changed 5, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/positionPreserve.pos
  • lines changed 1, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/pslPreserve.psl
  • lines changed 6, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/expected/samplePreserve.sample
  • lines changed 2, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/bed12Preserve.bed
  • lines changed 2, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/bed3Preserve.bed
  • lines changed 2, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/genePredPreserve.gp
  • lines changed 3, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/gffPreserve.gff
  • lines changed 3, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/gtfPreserve.gtf
  • lines changed 5, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/positionPreserve.pos
  • lines changed 1, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/pslPreserve.psl
  • lines changed 3, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/input/samplePreserve.sample
  • lines changed 3, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
• src/hg/liftOver/tests/makefile
  • lines changed 70, context: html, text, full: html, text
    8f29deda5ff897fbf1d208907ac7f734afc07ed2 Tue Oct 1 20:31:17 2024 -0700
    Many liftOver functions now have a preserveInput argument, which appends the input position to the name field. This makes it easier to see what got mapped where. The option is made available through a command-line argument to the liftOver utility and a checkbox in the hgLiftOver CGI, refs #28023
  • lines changed 4, context: html, text, full: html, text
    2d6c8b5aa593976bc312cb3111d9d4cd7b46938a Wed Oct 2 09:29:18 2024 -0700
    Position liftovers need to clean up temp files when they're done, refs #28023
• src/hg/makeDb/doc/hg38/lastzRuns.txt
  • lines changed 250, context: html, text, full: html, text
    992301fd95080179b4b58ccddc4d59584a5c4e3d Sun Oct 6 23:06:23 2024 -0700
    hg38 to GCF_950295315.1/GCF_002263795.3/GCF_011100685.1 lastz/chain/net run for users, refs #34429
• src/hg/makeDb/trackDb/ailMel1.gbdbList.txt
  • lines changed 0, context: html, text, full: html, text
    40bc5fed1c6cee7d147e2180d40dd1be5d907c42 Fri Oct 4 13:13:39 2024 -0700
    Adding knownGene and knownGeneArchive relations on the trackUi page, refs #33232
• src/hg/makeDb/trackDb/evaSnp.ra
  • lines changed 2, context: html, text, full: html, text
    bc9972eab535aa554398559fbb1aa5417a394e25 Thu Oct 3 16:15:24 2024 -0700
    Squashing old pennantIcons.
• src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra
  • lines changed 1, context: html, text, full: html, text
    bc9972eab535aa554398559fbb1aa5417a394e25 Thu Oct 3 16:15:24 2024 -0700
    Squashing old pennantIcons.
• src/hg/makeDb/trackDb/human/hg38/gnomadCNV.html
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    c1852c2e0c906044a24727cf95a1e2ed5fbc8b6c Fri Oct 4 12:33:59 2024 -0700
    Code review edits, refs #34531
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    ceb8d1427a947d63dd364c18c4c55e0cfce68bee Fri Oct 4 12:33:59 2024 -0700
    Code review edits, refs #34531
• src/hg/makeDb/trackDb/human/hg38/singleCellMerged.ra
  • lines changed 1, context: html, text, full: html, text
    bc9972eab535aa554398559fbb1aa5417a394e25 Thu Oct 3 16:15:24 2024 -0700
    Squashing old pennantIcons.
• src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra
  • lines changed 1, context: html, text, full: html, text
    bc9972eab535aa554398559fbb1aa5417a394e25 Thu Oct 3 16:15:24 2024 -0700
    Squashing old pennantIcons.
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    bc9972eab535aa554398559fbb1aa5417a394e25 Thu Oct 3 16:15:24 2024 -0700
    Squashing old pennantIcons.
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    b61bb7e74e2867f415f90103529922936794c5ff Fri Oct 4 13:09:48 2024 -0700
    Staging the knownGeneArchive track on hgwbeta, refs #33232
  • lines changed 1, context: html, text, full: html, text
    0ddb2fdb20db9b50500aee7b5b1667225be93419 Fri Oct 4 16:24:04 2024 -0700
    Releasing the GENCODE Genes archive tracks for hg38 and mm39, refs #33232
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    bc9972eab535aa554398559fbb1aa5417a394e25 Thu Oct 3 16:15:24 2024 -0700
    Squashing old pennantIcons.
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    8f9bdc6829b6271d3a49125f8e8cee9186286c81 Fri Oct 4 11:16:12 2024 -0700
    Accidentally committed this when squashing pennantIcons.
• src/hg/makeDb/trackDb/mouse/mm39/knownGene.ra
  • lines changed 1, context: html, text, full: html, text
    bc9972eab535aa554398559fbb1aa5417a394e25 Thu Oct 3 16:15:24 2024 -0700
    Squashing old pennantIcons.
• src/hg/makeDb/trackDb/mouse/mm39/trackDb.gencode.ra
  • lines changed 1, context: html, text, full: html, text
    bc9972eab535aa554398559fbb1aa5417a394e25 Thu Oct 3 16:15:24 2024 -0700
    Squashing old pennantIcons.
• src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra
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    b61bb7e74e2867f415f90103529922936794c5ff Fri Oct 4 13:09:48 2024 -0700
    Staging the knownGeneArchive track on hgwbeta, refs #33232
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    0ddb2fdb20db9b50500aee7b5b1667225be93419 Fri Oct 4 16:24:04 2024 -0700
    Releasing the GENCODE Genes archive tracks for hg38 and mm39, refs #33232
• src/hg/makeDb/trackDb/relatedTracks.ra
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    40bc5fed1c6cee7d147e2180d40dd1be5d907c42 Fri Oct 4 13:13:39 2024 -0700
    Adding knownGene and knownGeneArchive relations on the trackUi page, refs #33232
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    d17de827f8a48028011db1e75e34d33fa31ff3eb Fri Oct 4 16:45:18 2024 -0700
    Adding the relation between GENCODE Genes and the GENCODE archive for mm39, refs #33232
• src/hg/utils/automation/doRecipBest.pl
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    bd6c1a5bfa64bdeea75e21d6863cd785c9e17107 Tue Oct 1 13:56:26 2024 -0700
    genome-source has now become githubusercontent refs #34449
• src/hg/utils/automation/doSameSpeciesLiftOver.pl
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    4a157fbcc40beb3cd5279d221dac018d353ec78f Tue Oct 1 13:57:48 2024 -0700
    genome-source has now become githubusercontent refs #34449
• src/hg/utils/otto/otto.crontab
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    a8c9b1d84bf86acf3e9270e133ba0fca092c3eb8 Wed Oct 2 09:27:12 2024 -0700
    updating crontab
• src/hg/utils/otto/sarscov2phylo/nextstrain.clade-mutations.tsv
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    b8e0496d31b90ca198699073e624b46c7ef0e468 Mon Oct 7 13:02:13 2024 -0700
    Added 24D (XDV.1) and 24E (KP.3.1.1).
• src/inc/srcVersion.h
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    14e458a2850b153c5abf5c8cc329accdb0047d37 Mon Oct 7 15:09:22 2024 -0700
    New version number v472
• src/utils/qa/checkSessionsFromRR.py
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    4d9af30fcf1c2f3ba7b7477b85f02c813f65e169 Sun Oct 6 22:48:24 2024 -0700
    Adding errors to skip and updating the script when the monthly hgcentral dump does not exist, refs #32593
• src/utils/qa/weeklybld/buildEnv.csh
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    04d6dae916262b3d2c4b15aef684cea90cf1f1e5 Mon Oct 7 15:08:00 2024 -0700
    v472 final build, refs #34490

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