Commits for galt

v284_base to v285_preview (2013-05-27 to 2013-06-04) v285

• removing unwanted webEnd calls which caused duplicate ending html and warn handler pop underflow errors
  • src/hg/hgc/hgc.c - lines changed 4, context: html, text, full: html, text
• fix SQL Injection
  • src/hg/affyTransciptome/nmerParasolGenome.c - lines changed 1, context: html, text, full: html, text
  • src/hg/altSplice/affySplice/probeMatcher.c - lines changed 8, context: html, text, full: html, text
  • src/hg/altSplice/affySplice/spliceProbeVis.c - lines changed 5, context: html, text, full: html, text
  • src/hg/altSplice/altSplice/altSplice.c - lines changed 1, context: html, text, full: html, text
  • src/hg/altSplice/altSplice/orthoSplice.c - lines changed 4, context: html, text, full: html, text
  • src/hg/altSplice/altSplice/spliceStats.c - lines changed 1, context: html, text, full: html, text
  • src/hg/altSplice/axtCountBeds/axtCountBeds.c - lines changed 2, context: html, text, full: html, text
  • src/hg/altSplice/exonWalk/exonWalk.c - lines changed 1, context: html, text, full: html, text
  • src/hg/altSplice/inc/mouseAPSetEventMap.h - lines changed 12, context: html, text, full: html, text
  • src/hg/altSplice/lib/mouseAPSetEventMap.c - lines changed 29, context: html, text, full: html, text
  • src/hg/altSplice/spliceWalk/spliceWalk.c - lines changed 1, context: html, text, full: html, text
  • src/hg/autoSql/autoSql.c - lines changed 147, context: html, text, full: html, text
  • src/hg/autoSql/tests/dbLinkTest.c - lines changed 4, context: html, text, full: html, text
  • src/hg/autoSql/tests/expected/newTest.c - lines changed 34, context: html, text, full: html, text
  • src/hg/autoSql/tests/expected/newTest.err - lines changed 1, context: html, text, full: html, text
  • src/hg/autoSql/tests/expected/newTest.h - lines changed 12, context: html, text, full: html, text
  • src/hg/autoSql/tests/testSymCols.c - lines changed 1, context: html, text, full: html, text
  • src/hg/bedItemOverlapCount/bedItemOverlapCount.c - lines changed 1, context: html, text, full: html, text
  • src/hg/bioImage/bioImageLoad/bioImageLoad.c - lines changed 9, context: html, text, full: html, text
  • src/hg/bioImage/knownToBioImage/knownToBioImage.c - lines changed 5, context: html, text, full: html, text
  • src/hg/cgiExample/cgiExample.c - lines changed 2, context: html, text, full: html, text
  • src/hg/checkHgFindSpec/checkHgFindSpec.c - lines changed 1, context: html, text, full: html, text
  • src/hg/checkTableCoords/checkTableCoords.c - lines changed 4, context: html, text, full: html, text
  • src/hg/checkTableCoords/tests/expected/bed12CTCBad.out - lines changed 15, context: html, text, full: html, text
  • src/hg/checkTableCoords/tests/expected/bed3CTCBad.out - lines changed 2, context: html, text, full: html, text
  • src/hg/checkTableCoords/tests/expected/bed4CTCBad.out - lines changed 2, context: html, text, full: html, text
  • src/hg/checkTableCoords/tests/expected/bed8CTCBad.out - lines changed 4, context: html, text, full: html, text
  • src/hg/checkTableCoords/tests/expected/genePredCTCBad.out - lines changed 18, context: html, text, full: html, text
  • src/hg/checkTableCoords/tests/expected/pslCTCBad.out - lines changed 6, context: html, text, full: html, text
  • src/hg/checkTableCoords/tests/makefile - lines changed 6, context: html, text, full: html, text
  • src/hg/das/das.c - lines changed 9, context: html, text, full: html, text
  • src/hg/dbTrash/dbTrash.c - lines changed 7, context: html, text, full: html, text
  • src/hg/dnaGene/dnaGene.c - lines changed 20, context: html, text, full: html, text
  • src/hg/encode/docId/docIdReport/docIdReport.c - lines changed 1, context: html, text, full: html, text
  • src/hg/encode/docId/docIdTidy/docIdTidy.c - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/docId/docIdView/docIdView.c - lines changed 5, context: html, text, full: html, text
  • src/hg/encode/docId/lib/docIdSub.c - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeExp/encodeExp.c - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/encodeRenameObj/encodeRenameObj.c - lines changed 17, context: html, text, full: html, text
  • src/hg/encode/hgEncodeApi/hgEncodeApi.c - lines changed 1, context: html, text, full: html, text
  • src/hg/encode/hgEncodeScheduler/hgEncodeScheduler.c - lines changed 18, context: html, text, full: html, text
  • src/hg/encode/metaCheck/metaCheck.c - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/metaRename/metaRename.c - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/regionOrtho/regionOrtho.c - lines changed 1, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwAddAssembly/edwAddAssembly.c - lines changed 2, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwAddQaEnrichTarget/edwAddQaEnrichTarget.c - lines changed 3, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwAddSubscriber/edwAddSubscriber.c - lines changed 8, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwChangeFormat/edwChangeFormat.c - lines changed 5, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwMakeEnrichments/edwMakeEnrichments.c - lines changed 2, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwMakeReplicateQa/edwMakeReplicateQa.c - lines changed 3, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/edwMakeValidFile.c - lines changed 7, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwReallyRemoveFiles/edwReallyRemoveFiles.c - lines changed 8, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwRunDaemon/edwRunDaemon.c - lines changed 7, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwScriptSubmit/edwScriptSubmit.c - lines changed 5, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c - lines changed 26, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwWebBrowse/edwWebBrowse.c - lines changed 8, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwWebRegisterScript/edwWebRegisterScript.c - lines changed 1, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/edwWebSubmit/edwWebSubmit.c - lines changed 3, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/inc/encodeDataWarehouse.h - lines changed 180, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/lib/edwLib.c - lines changed 49, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.c - lines changed 385, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/encode2ExpDumpFlat/encode2ExpDumpFlat.c - lines changed 5, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/encode2Meta/encode2Meta.c - lines changed 1, context: html, text, full: html, text
  • src/hg/encode3/importEncode2/encodeExpToCvDb/encodeExpToCvDb.c - lines changed 2, context: html, text, full: html, text
  • src/hg/estOrient/estOrient.c - lines changed 2, context: html, text, full: html, text
  • src/hg/featureBits/featureBits.c - lines changed 4, context: html, text, full: html, text
  • src/hg/fishClones/fishClones.c - lines changed 5, context: html, text, full: html, text
  • src/hg/geneBounds/assessLibs/assessLibs.c - lines changed 3, context: html, text, full: html, text
  • src/hg/geneBounds/axtForEst/axtForEst.c - lines changed 1, context: html, text, full: html, text
  • src/hg/geneBounds/bedCons/bedCons.c - lines changed 1, context: html, text, full: html, text
  • src/hg/geneBounds/clusterGenes/clusterGenes.c - lines changed 2, context: html, text, full: html, text
  • src/hg/geneBounds/clusterRna/clusterRna.c - lines changed 3, context: html, text, full: html, text
  • src/hg/geneBounds/eisenInput/eisenInput.c - lines changed 2, context: html, text, full: html, text
  • src/hg/geneBounds/estLibStats/estLibStats.c - lines changed 3, context: html, text, full: html, text
  • src/hg/geneBounds/lib/improbRunInfo.c - lines changed 1, context: html, text, full: html, text
  • src/hg/geneBounds/promoSeqFromCluster/promoSeqFromCluster.c - lines changed 1, context: html, text, full: html, text
  • src/hg/getFeatDna/getFeatDna.c - lines changed 3, context: html, text, full: html, text
  • src/hg/getRna/getRna.c - lines changed 2, context: html, text, full: html, text
  • src/hg/getRnaPred/getRnaPred.c - lines changed 1, context: html, text, full: html, text
  • src/hg/getallpep/getallpep.c - lines changed 20, context: html, text, full: html, text
  • src/hg/gigAssembler/checkDbSync/checkDbSync.c - lines changed 2, context: html, text, full: html, text
  • src/hg/gisaid/gisaidSample/demog.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gisaid/gisaidSample/gisaidSample.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gisaid/gisaidSample/sequence.c - lines changed 6, context: html, text, full: html, text
  • src/hg/gisaid/gisaidSubj/demog.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gisaid/gisaidSubj/gisaidSubj.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gisaid/gisaidSubj/sequence.c - lines changed 4, context: html, text, full: html, text
  • src/hg/gisaid/gisaidTable/getSeq.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gisaid/gisaidTable/gisaidSubjInfo.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gisaid/gisaidTable/gisaidTable.c - lines changed 5, context: html, text, full: html, text
  • src/hg/gpToGtf/gpToGtf.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsIdXref/gsIdXref.c - lines changed 2, context: html, text, full: html, text
  • src/hg/gsid/gsidAaMsa/gsidAaMsa.c - lines changed 2, context: html, text, full: html, text
  • src/hg/gsid/gsidGetConsensus/gsidGetConsensus.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidMember/gsidMember.c - lines changed 29, context: html, text, full: html, text
  • src/hg/gsid/gsidMsa/gsidMsa.c - lines changed 2, context: html, text, full: html, text
  • src/hg/gsid/gsidMsaToTab/gsidMsaToTab.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidPosSelect/gsidPosSelect.c - lines changed 2, context: html, text, full: html, text
  • src/hg/gsid/gsidSubj/clinical.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidSubj/demog.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidSubj/gsidSubj.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidSubj/sequence.c - lines changed 2, context: html, text, full: html, text
  • src/hg/gsid/gsidSubj/vaccine.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidSubj3/clinical.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidSubj3/demog.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidSubj3/gsidSubj3.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidSubj3/sequence.c - lines changed 2, context: html, text, full: html, text
  • src/hg/gsid/gsidSubj3/vaccine.c - lines changed 3, context: html, text, full: html, text
  • src/hg/gsid/gsidTable/getSeq.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidTable/gsidSubjInfo.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/gsidTable/gsidTable.c - lines changed 4, context: html, text, full: html, text
  • src/hg/gsid/pbGsid/pbGsid.c - lines changed 1, context: html, text, full: html, text
  • src/hg/gsid/pwdtest/members.h - lines changed 12, context: html, text, full: html, text
  • src/hg/hgApi/hgApi.c - lines changed 7, context: html, text, full: html, text
  • src/hg/hgBlat/hgBlat.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgBlatTest/hgBlatTest.c - lines changed 12, context: html, text, full: html, text
  • src/hg/hgCoordConv/hgCoordConv.c - lines changed 20, context: html, text, full: html, text
  • src/hg/hgGateway/hgGateway.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGene/altSplice.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGene/ctd.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgGene/dnaBindMotif.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgGene/domains.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgGene/flyBaseInfo.c - lines changed 10, context: html, text, full: html, text
  • src/hg/hgGene/gad.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgGene/geneReviews.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgGene/go.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgGene/hgGene.c - lines changed 12, context: html, text, full: html, text
  • src/hg/hgGene/info.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgGene/links.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgGene/localization.c - lines changed 8, context: html, text, full: html, text
  • src/hg/hgGene/microarray.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgGene/mrnaDescriptions.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGene/otherOrgs.c - lines changed 7, context: html, text, full: html, text
  • src/hg/hgGene/pathways.c - lines changed 14, context: html, text, full: html, text
  • src/hg/hgGene/pseudoGene.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgGene/rgdInfo.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgGene/rnaStructure.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgGene/sequence.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgGene/swissProtComments.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgGene/synonym.c - lines changed 13, context: html, text, full: html, text
  • src/hg/hgGene/wikiTrack.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgGeneBands/hgGeneBands.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgGeneList/hgGeneList.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgGeneRing/hgGeneRing.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgGeneRing/interaction.c - lines changed 25, context: html, text, full: html, text
  • src/hg/hgGeneRing/interaction.h - lines changed 12, context: html, text, full: html, text
  • src/hg/hgGenome/bedList.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGenome/custom.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGenome/hgGenome.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgGenome/import.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgGenome/sortGenes.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGetAnn/hgGetAnn.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgKnownGeneList/hgKnownGeneList.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgLogin/gbMembers.c - lines changed 45, context: html, text, full: html, text
  • src/hg/hgLogin/gbMembers.h - lines changed 12, context: html, text, full: html, text
  • src/hg/hgLogin/hgLogin.c - lines changed 25, context: html, text, full: html, text
  • src/hg/hgPcr/hgPcr.c - lines changed 12, context: html, text, full: html, text
  • src/hg/hgSelect/hgSelect.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgSession/hgSession.c - lines changed 33, context: html, text, full: html, text
  • src/hg/hgSpeciesRna/hgSpeciesRna.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgSuggest/hgSuggest.c - lines changed 8, context: html, text, full: html, text
  • src/hg/hgTables/correlate.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTables/custom.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTables/filterFields.c - lines changed 10, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.c - lines changed 11, context: html, text, full: html, text
  • src/hg/hgTables/identifiers.c - lines changed 8, context: html, text, full: html, text
  • src/hg/hgTables/mainPage.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTables/rangeHistogram.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTables/schema.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTables/seqOut.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTables/wikiTrack.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTablesTest/hgTablesTest.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgText/hgText.c - lines changed 15, context: html, text, full: html, text
  • src/hg/hgText/hgWigText.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTrackUi/cgapSageUi.c - lines changed 10, context: html, text, full: html, text
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  • src/hg/hgTracks/bedTrack.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/cds.c - lines changed 1, context: html, text, full: html, text
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  • src/hg/hgTracks/chainTrack.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/chromGraphTrack.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/contigTrack.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/coverageTrack.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/cutterTrack.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/cytoBandTrack.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/expRatioTracks.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/factorSource.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/gencodeTracks.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgTracks/loweLabTracks.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/makeItemsTrack.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTracks/menu.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/pslTrack.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/pubsTracks.c - lines changed 13, context: html, text, full: html, text
  • src/hg/hgTracks/rmskTrack.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/sampleTracks.c - lines changed 7, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 133, context: html, text, full: html, text
  • src/hg/hgTracks/snakeTrack.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/wabaTrack.c - lines changed 2, context: html, text, full: html, text
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  • src/hg/hgc/ccdsClick.c - lines changed 3, context: html, text, full: html, text
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  • src/hg/hgc/dbRIP.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgc/encodeClick.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgc/expClick.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgc/gencodeClick.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgc/gvfClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 506, context: html, text, full: html, text
  • src/hg/hgc/hgdpClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/lowelab.c - lines changed 90, context: html, text, full: html, text
  • src/hg/hgc/mafClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/makeItemsClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/mgcClick.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgc/numtsClick.c - lines changed 7, context: html, text, full: html, text
  • src/hg/hgc/parClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/peakClusters.c - lines changed 14, context: html, text, full: html, text
  • src/hg/hgc/pubs.c - lines changed 11, context: html, text, full: html, text
  • src/hg/hgc/regMotif.c - lines changed 10, context: html, text, full: html, text
  • src/hg/hgc/retroClick.c - lines changed 12, context: html, text, full: html, text
  • src/hg/hgc/rnaFoldClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/txCdsInfo.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgc/virusClick.c - lines changed 5, context: html, text, full: html, text
  • src/hg/hgc/wiggleClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/wikiTrack.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hgcentralTidy/hgcentralTidy.c - lines changed 6, context: html, text, full: html, text
  • src/hg/inc/affy10K.h - lines changed 12, context: html, text, full: html, text
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