All File Changes

v380_base to v381_preview (2019-04-08 to 2019-04-15) v381

• src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c
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    38bef45eaaae2157df46f86b60ee18f48a7094f2 Tue Apr 9 22:18:33 2019 -0700
    needed exception for meta.txt that is explicitly listed in maniSummary.txt. We do NOT want to turn the real file in the wrangle dir into a symlink in this case.
• src/hg/cirm/cdw/lib/cdwPageHeader.h
  • lines changed 2, context: html, text, full: html, text
    6016f23d0d8312bfdb1b60fa07561f9331b3f913 Fri Apr 12 17:14:28 2019 -0700
    fixed missing h5 end tags in cirm gateway code
• src/hg/cirm/gateway/htdocs/dcg/brainOfCells.html
  • lines changed 21, context: html, text, full: html, text
    784fffd5ff9bba1fa8e34fef0b6033895a4b99ce Fri Apr 5 10:50:06 2019 -0700
    Adding initial stubs of pages for heart and brain of cells pages. refs #22796
• src/hg/cirm/gateway/htdocs/dcg/heartOfCells.html
  • lines changed 21, context: html, text, full: html, text
    784fffd5ff9bba1fa8e34fef0b6033895a4b99ce Fri Apr 5 10:50:06 2019 -0700
    Adding initial stubs of pages for heart and brain of cells pages. refs #22796
• src/hg/cirm/gateway/htdocs/inc/header.html
  • lines changed 2, context: html, text, full: html, text
    6016f23d0d8312bfdb1b60fa07561f9331b3f913 Fri Apr 12 17:14:28 2019 -0700
    fixed missing h5 end tags in cirm gateway code
• src/hg/cirm/gateway/htdocs/projects.html
  • lines changed 1112, context: html, text, full: html, text
    379366574e268b3f229e4598b823b3c619fa59b7 Tue Apr 9 10:53:13 2019 -0700
    Major rewrite of page to make code more readable and hopefully easier to edit, refs #23250
  • lines changed 7, context: html, text, full: html, text
    642040bb02449a61e547ac003facf60f8310e8ba Tue Apr 9 17:31:36 2019 -0700
    Making section headers have light gray background. Correcting link for kriegsteinBrainOrganoids1 paper. Fixing up white space for Therapeutics and Pancreas sections. refs #23255
• src/hg/hgCollection/hgCollection.c
  • lines changed 1, context: html, text, full: html, text
    130da4c7702c81ce819af51601e36400c3afbcea Fri Apr 12 14:28:31 2019 -0700
    Updating jstree library version for hgCollection and hgHubConnect, refs #23296
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 2, context: html, text, full: html, text
    130da4c7702c81ce819af51601e36400c3afbcea Fri Apr 12 14:28:31 2019 -0700
    Updating jstree library version for hgCollection and hgHubConnect, refs #23296
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 4, context: html, text, full: html, text
    2a58331d892e73c2c4969455f750a7b0a41f3ba1 Thu Apr 4 16:43:45 2019 -0700
    Extend right label feature to show count of cell types contributing to cluster, and total experiments for the factor (configurable). refs #21139
  • lines changed 8, context: html, text, full: html, text
    cf12becbe8cd0fd3fdf3b5341ee4a90729cd9c0b Mon Apr 8 16:30:47 2019 -0700
    Show new option first (as feature appears first in labels), as per Bob K. input. refs #23277
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 4, context: html, text, full: html, text
    c8c7f5c3d5b590e37dfd321d99b7dd3f1baaa3c1 Tue Apr 9 13:12:00 2019 -0700
    some tweaks to GDC cancer track, bigBed filters, and lollipop manual ranges
• src/hg/hgTracks/factorSource.c
  • lines changed 4, context: html, text, full: html, text
    a3c34fc62526e195b493ec41e72f6b4a3ebe799f Wed Apr 3 15:30:07 2019 -0700
    Very preliminary
  • lines changed 61, context: html, text, full: html, text
    2a58331d892e73c2c4969455f750a7b0a41f3ba1 Thu Apr 4 16:43:45 2019 -0700
    Extend right label feature to show count of cell types contributing to cluster, and total experiments for the factor (configurable). refs #21139
• src/hg/hgTracks/lolly.c
  • lines changed 16, context: html, text, full: html, text
    b18dedbef637679fdf72b86f2243954fa302aa1e Mon Apr 8 14:54:46 2019 -0700
    deal with NO_DATA situation in left labels of lollipops. Move the bigBed
  • lines changed 9, context: html, text, full: html, text
    c8c7f5c3d5b590e37dfd321d99b7dd3f1baaa3c1 Tue Apr 9 13:12:00 2019 -0700
    some tweaks to GDC cancer track, bigBed filters, and lollipop manual ranges
• src/hg/hgc/gencodeClick.c
  • lines changed 10, context: html, text, full: html, text
    3a4f6c4b7c479dea4d9a6ac7ed63a634b9fd1c60 Tue Apr 9 22:42:40 2019 -0700
    don't generate linkes to HGNC or GeneCards if gene name is one of the fake generated names
• src/hg/htdocs/goldenPath/help/api.html
  • lines changed 11, context: html, text, full: html, text
    3c3c42b1f7491b065fe19858f24d91fd93524fe5 Mon Apr 8 14:37:27 2019 -0700
    added support for PSL types and remove reference to top-level explore tools refs #18869
  • lines changed 1, context: html, text, full: html, text
    3955a694a0ba5c50f6e3e917b4943c8e2cc09f62 Tue Apr 9 08:37:44 2019 -0700
    adding repeat masker supported refs #18869
  • lines changed 3, context: html, text, full: html, text
    4c733b55a2b422a460903e221f680d53c468afa2 Tue Apr 9 15:59:34 2019 -0700
    add the trackLeavesOnly option refs #18869
• src/hg/htdocs/goldenPath/help/barChart.html
  • lines changed 1, context: html, text, full: html, text
    233bc1d31d1db799ea621f75bd2a95ba78ab690e Mon Apr 8 14:28:23 2019 -0700
    Fixing example numbering and anchors #23271
• src/hg/htdocs/goldenPath/help/bigBed.html
  • lines changed 1, context: html, text, full: html, text
    233bc1d31d1db799ea621f75bd2a95ba78ab690e Mon Apr 8 14:28:23 2019 -0700
    Fixing example numbering and anchors #23271
• src/hg/htdocs/goldenPath/help/bigChain.html
  • lines changed 1, context: html, text, full: html, text
    233bc1d31d1db799ea621f75bd2a95ba78ab690e Mon Apr 8 14:28:23 2019 -0700
    Fixing example numbering and anchors #23271
• src/hg/htdocs/goldenPath/help/bigGenePred.html
  • lines changed 1, context: html, text, full: html, text
    233bc1d31d1db799ea621f75bd2a95ba78ab690e Mon Apr 8 14:28:23 2019 -0700
    Fixing example numbering and anchors #23271
  • lines changed 1, context: html, text, full: html, text
    f60458991e24e246fd061ca1d4e6861585b0cd09 Mon Apr 8 15:14:12 2019 -0700
    Fixing minor things for code review #23271
  • lines changed 27, context: html, text, full: html, text
    7a173a092486bb744c3f42d694aab108ecae34d5 Wed Apr 10 12:21:42 2019 -0700
    Adding GTF to bigGenePred Example4 #21582
  • lines changed 4, context: html, text, full: html, text
    4ac05a32376cf48f5294c4aaeb9b056a527b0e31 Wed Apr 10 13:34:47 2019 -0700
    Adding anchors to examples for easier reference #21582
  • lines changed 8, context: html, text, full: html, text
    8b76506ec11f2a1bd3bbdae4e27afa7894754dfc Wed Apr 10 17:10:34 2019 -0700
    Changing example4 #21582
• src/hg/htdocs/goldenPath/help/bigMaf.html
  • lines changed 1, context: html, text, full: html, text
    233bc1d31d1db799ea621f75bd2a95ba78ab690e Mon Apr 8 14:28:23 2019 -0700
    Fixing example numbering and anchors #23271
• src/hg/htdocs/goldenPath/help/bigNarrowPeak.html
  • lines changed 1, context: html, text, full: html, text
    233bc1d31d1db799ea621f75bd2a95ba78ab690e Mon Apr 8 14:28:23 2019 -0700
    Fixing example numbering and anchors #23271
• src/hg/htdocs/goldenPath/help/bigPsl.html
  • lines changed 1, context: html, text, full: html, text
    233bc1d31d1db799ea621f75bd2a95ba78ab690e Mon Apr 8 14:28:23 2019 -0700
    Fixing example numbering and anchors #23271
• src/hg/htdocs/goldenPath/help/bigWig.html
  • lines changed 1, context: html, text, full: html, text
    233bc1d31d1db799ea621f75bd2a95ba78ab690e Mon Apr 8 14:28:23 2019 -0700
    Fixing example numbering and anchors #23271
• src/hg/htdocs/goldenPath/help/gbib.html
  • lines changed 12, context: html, text, full: html, text
    3ee878868f99323adc776acd22fbdc6851ee659a Fri Apr 12 13:08:35 2019 -0700
    Adding hgdownload-euro TCP examples to the GBiB help page, refs #20551
• src/hg/htdocs/goldenPath/help/gbic.html
  • lines changed 12, context: html, text, full: html, text
    fe3ea6f0a43b7dcfe2ea05a13c8a053be2ca793d Fri Apr 12 14:23:10 2019 -0700
    Adding TCP examples for hgdownload-euro on the GBiC help page, refs #20551
• src/hg/htdocs/goldenPath/help/hgTracksHelp.html
  • lines changed 12, context: html, text, full: html, text
    5b7f712d3aa7c7843ba13018b4337cdb8288e19c Fri Apr 12 15:20:19 2019 -0700
    Adding images to hgTracksHelp.html, refs #23285
• src/hg/htdocs/goldenPath/help/hgVcfTrackHelp.html
  • lines changed 1, context: html, text, full: html, text
    233bc1d31d1db799ea621f75bd2a95ba78ab690e Mon Apr 8 14:28:23 2019 -0700
    Fixing example numbering and anchors #23271
• src/hg/htdocs/goldenPath/help/interact.html
  • lines changed 1, context: html, text, full: html, text
    233bc1d31d1db799ea621f75bd2a95ba78ab690e Mon Apr 8 14:28:23 2019 -0700
    Fixing example numbering and anchors #23271
• src/hg/htdocs/goldenPath/help/mirror.html
  • lines changed 1, context: html, text, full: html, text
    830e78bb7ddfccb4c8a6875c121b6764a4781f23 Mon Apr 8 16:40:13 2019 -0700
    Removing an extra 'our', no Redmine.
  • lines changed 5, context: html, text, full: html, text
    20ea9ab912901cd49da91257af5eba5cefde3054 Tue Apr 9 16:36:36 2019 -0700
    Mentioning the European download server and adding rsync examples to hgdownload-euro, refs #20551
• src/hg/htdocs/images/gc_dense.png
  • lines changed 0, context: html, text, full: html, text
    10bbcf5ebfcaf723bd2f7de091ad2387b0c4c3a1 Fri Apr 12 14:37:04 2019 -0700
    adding visibility setting images to hgTracksHelp.html, refs #23285
  • lines changed 0, context: html, text, full: html, text
    5b7f712d3aa7c7843ba13018b4337cdb8288e19c Fri Apr 12 15:20:19 2019 -0700
    Adding images to hgTracksHelp.html, refs #23285
• src/hg/htdocs/images/gc_full2.png
  • lines changed 0, context: html, text, full: html, text
    10bbcf5ebfcaf723bd2f7de091ad2387b0c4c3a1 Fri Apr 12 14:37:04 2019 -0700
    adding visibility setting images to hgTracksHelp.html, refs #23285
  • lines changed 0, context: html, text, full: html, text
    5b7f712d3aa7c7843ba13018b4337cdb8288e19c Fri Apr 12 15:20:19 2019 -0700
    Adding images to hgTracksHelp.html, refs #23285
• src/hg/htdocs/images/gc_pack2.png
  • lines changed 0, context: html, text, full: html, text
    10bbcf5ebfcaf723bd2f7de091ad2387b0c4c3a1 Fri Apr 12 14:37:04 2019 -0700
    adding visibility setting images to hgTracksHelp.html, refs #23285
  • lines changed 0, context: html, text, full: html, text
    5b7f712d3aa7c7843ba13018b4337cdb8288e19c Fri Apr 12 15:20:19 2019 -0700
    Adding images to hgTracksHelp.html, refs #23285
• src/hg/htdocs/images/gc_squish.png
  • lines changed 0, context: html, text, full: html, text
    10bbcf5ebfcaf723bd2f7de091ad2387b0c4c3a1 Fri Apr 12 14:37:04 2019 -0700
    adding visibility setting images to hgTracksHelp.html, refs #23285
  • lines changed 0, context: html, text, full: html, text
    5b7f712d3aa7c7843ba13018b4337cdb8288e19c Fri Apr 12 15:20:19 2019 -0700
    Adding images to hgTracksHelp.html, refs #23285
• src/hg/htdocs/training/index.html
  • lines changed 31, context: html, text, full: html, text
    8b1d80b908a51b4e9a20066c902a53ead3b4884b Sun Apr 14 19:11:53 2019 -0700
    removing puerto rico workshop, moving eshg into active list
• src/hg/hubApi/apiUtils.c
  • lines changed 14, context: html, text, full: html, text
    f01366a14e4574f413ed9b55a0d1c36376074dd8 Tue Apr 9 14:43:00 2019 -0700
    adding an allowedBigBedType() function to recognize that set of big types refs #18869
  • lines changed 14, context: html, text, full: html, text
    6eacdcdb29afdeefa7ba7a5ec1e52e13e86680f9 Wed Apr 10 14:45:45 2019 -0700
    better layout for selection menus and now returning errors properly refs #18869
  • lines changed 3, context: html, text, full: html, text
    4ab10833a68e3f95eb8449def2b67fac9416fb91 Thu Apr 11 11:06:02 2019 -0700
    now with 404 error for open problems and scrolling text window with margin refs #18869
• src/hg/hubApi/dataApi.h
  • lines changed 5, context: html, text, full: html, text
    f01366a14e4574f413ed9b55a0d1c36376074dd8 Tue Apr 9 14:43:00 2019 -0700
    adding an allowedBigBedType() function to recognize that set of big types refs #18869
  • lines changed 5, context: html, text, full: html, text
    9dea574cbee73dd37366cbb33a993569647184c1 Tue Apr 9 15:16:06 2019 -0700
    adding trackLeavesOnly option and returning all containers on list tracks refs #18869
  • lines changed 4, context: html, text, full: html, text
    6eacdcdb29afdeefa7ba7a5ec1e52e13e86680f9 Wed Apr 10 14:45:45 2019 -0700
    better layout for selection menus and now returning errors properly refs #18869
• src/hg/hubApi/getData.c
  • lines changed 44, context: html, text, full: html, text
    24992e962e50a3ba5ab93e1af502fde3a0b99893 Mon Apr 8 14:31:37 2019 -0700
    now supporting psl types refs #18869
  • lines changed 70, context: html, text, full: html, text
    0222476b54fcfb70acb694f9819c9fbcbbeea7f8 Tue Apr 9 08:31:05 2019 -0700
    adding supported type rmsk refs #18869
  • lines changed 3, context: html, text, full: html, text
    f01366a14e4574f413ed9b55a0d1c36376074dd8 Tue Apr 9 14:43:00 2019 -0700
    adding an allowedBigBedType() function to recognize that set of big types refs #18869
  • lines changed 37, context: html, text, full: html, text
    6eacdcdb29afdeefa7ba7a5ec1e52e13e86680f9 Wed Apr 10 14:45:45 2019 -0700
    better layout for selection menus and now returning errors properly refs #18869
• src/hg/hubApi/hubApi.c
  • lines changed 4, context: html, text, full: html, text
    24992e962e50a3ba5ab93e1af502fde3a0b99893 Mon Apr 8 14:31:37 2019 -0700
    now supporting psl types refs #18869
  • lines changed 2, context: html, text, full: html, text
    0222476b54fcfb70acb694f9819c9fbcbbeea7f8 Tue Apr 9 08:31:05 2019 -0700
    adding supported type rmsk refs #18869
  • lines changed 25, context: html, text, full: html, text
    e8bc6082872e9d16854282dd7affdc703b736023 Tue Apr 9 13:43:48 2019 -0700
    add sample getData for superTrack child refs #18869
  • lines changed 5, context: html, text, full: html, text
    f01366a14e4574f413ed9b55a0d1c36376074dd8 Tue Apr 9 14:43:00 2019 -0700
    adding an allowedBigBedType() function to recognize that set of big types refs #18869
  • lines changed 15, context: html, text, full: html, text
    9dea574cbee73dd37366cbb33a993569647184c1 Tue Apr 9 15:16:06 2019 -0700
    adding trackLeavesOnly option and returning all containers on list tracks refs #18869
  • lines changed 230, context: html, text, full: html, text
    6eacdcdb29afdeefa7ba7a5ec1e52e13e86680f9 Wed Apr 10 14:45:45 2019 -0700
    better layout for selection menus and now returning errors properly refs #18869
  • lines changed 11, context: html, text, full: html, text
    4ab10833a68e3f95eb8449def2b67fac9416fb91 Thu Apr 11 11:06:02 2019 -0700
    now with 404 error for open problems and scrolling text window with margin refs #18869
  • lines changed 9, context: html, text, full: html, text
    adebe24a8bd4bae96112b0565465e43fa202a50d Thu Apr 11 14:39:46 2019 -0700
    add JSON public hubs and UCSC database genomes example links refs #18869
  • lines changed 2, context: html, text, full: html, text
    a4727aff4884c0ac6aba563875e3d78f0b7a27bd Fri Apr 12 23:10:21 2019 -0700
    error 459 is actually 429 refs #18869
• src/hg/hubApi/list.c
  • lines changed 7, context: html, text, full: html, text
    9dea574cbee73dd37366cbb33a993569647184c1 Tue Apr 9 15:16:06 2019 -0700
    adding trackLeavesOnly option and returning all containers on list tracks refs #18869
  • lines changed 33, context: html, text, full: html, text
    6eacdcdb29afdeefa7ba7a5ec1e52e13e86680f9 Wed Apr 10 14:45:45 2019 -0700
    better layout for selection menus and now returning errors properly refs #18869
  • lines changed 3, context: html, text, full: html, text
    c36458c5460d65ac3eda186e2659f1cbb2b6b695 Thu Apr 11 13:53:21 2019 -0700
    fixing up error returns refs #18869
• src/hg/hubApi/tests/expected/test0.gz
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    fe765adf8b12a7ce73c5290274f3d7c1b204ae0b Wed Apr 10 14:46:35 2019 -0700
    now returning errors properly refs #18869
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    0f08117c738abc8d206ac07f43c50545108c042e Wed Apr 10 15:00:00 2019 -0700
    allow different servers for testing refs #18869
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    675d9d22b454efa28e3e095c8fe1c94efc5d1858 Wed Apr 10 15:14:13 2019 -0700
    eliminate registrationTime which may be different on other SQL servers refs #18869
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    5bf541678926a192e843b1dc6da145e0fe3b31cf Thu Apr 11 13:55:51 2019 -0700
    improving error tests refs #18869
• src/hg/hubApi/tests/expected/test20.gz
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    fe765adf8b12a7ce73c5290274f3d7c1b204ae0b Wed Apr 10 14:46:35 2019 -0700
    now returning errors properly refs #18869
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    0f08117c738abc8d206ac07f43c50545108c042e Wed Apr 10 15:00:00 2019 -0700
    allow different servers for testing refs #18869
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    5bf541678926a192e843b1dc6da145e0fe3b31cf Thu Apr 11 13:55:51 2019 -0700
    improving error tests refs #18869
• src/hg/hubApi/tests/expected/test25.gz
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    d7e238e3924f048d0964a95a276b03e23c6bdeb2 Tue Apr 9 08:32:40 2019 -0700
    adding supported type rmsk refs #18869
• src/hg/hubApi/tests/expected/test26.gz
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    b3403eb665dde90642274e4bc92f4f4a5aa4a576 Mon Apr 8 14:52:25 2019 -0700
    add test for genePred and PSL track types refs #18869
• src/hg/hubApi/tests/expected/test27.gz
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    b3403eb665dde90642274e4bc92f4f4a5aa4a576 Mon Apr 8 14:52:25 2019 -0700
    add test for genePred and PSL track types refs #18869
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    d7e238e3924f048d0964a95a276b03e23c6bdeb2 Tue Apr 9 08:32:40 2019 -0700
    adding supported type rmsk refs #18869
• src/hg/hubApi/tests/expected/test28.gz
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    d7e238e3924f048d0964a95a276b03e23c6bdeb2 Tue Apr 9 08:32:40 2019 -0700
    adding supported type rmsk refs #18869
• src/hg/hubApi/tests/expected/test29.gz
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    e8bc6082872e9d16854282dd7affdc703b736023 Tue Apr 9 13:43:48 2019 -0700
    add sample getData for superTrack child refs #18869
• src/hg/hubApi/tests/expected/test3.gz
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    aa2b841506a4ac562f3d054440caf4293ff3ef5a Tue Apr 9 15:24:45 2019 -0700
    adding trackLeavesOnly refs #18869
• src/hg/hubApi/tests/expected/test30.gz
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    aa2b841506a4ac562f3d054440caf4293ff3ef5a Tue Apr 9 15:24:45 2019 -0700
    adding trackLeavesOnly refs #18869
• src/hg/hubApi/tests/expected/test31.gz
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    aa2b841506a4ac562f3d054440caf4293ff3ef5a Tue Apr 9 15:24:45 2019 -0700
    adding trackLeavesOnly refs #18869
• src/hg/hubApi/tests/expected/test32.gz
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    2ca8c68595f3a083a0b6032ead19f6621529c4a2 Thu Apr 11 13:52:30 2019 -0700
    adding error testing refs #18869
• src/hg/hubApi/tests/expected/test33.gz
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    2ca8c68595f3a083a0b6032ead19f6621529c4a2 Thu Apr 11 13:52:30 2019 -0700
    adding error testing refs #18869
• src/hg/hubApi/tests/expected/test34.gz
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    2ca8c68595f3a083a0b6032ead19f6621529c4a2 Thu Apr 11 13:52:30 2019 -0700
    adding error testing refs #18869
• src/hg/hubApi/tests/expected/test35.gz
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    2ca8c68595f3a083a0b6032ead19f6621529c4a2 Thu Apr 11 13:52:30 2019 -0700
    adding error testing refs #18869
• src/hg/hubApi/tests/expected/test36.gz
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    2ca8c68595f3a083a0b6032ead19f6621529c4a2 Thu Apr 11 13:52:30 2019 -0700
    adding error testing refs #18869
• src/hg/hubApi/tests/expected/test37.gz
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    2ca8c68595f3a083a0b6032ead19f6621529c4a2 Thu Apr 11 13:52:30 2019 -0700
    adding error testing refs #18869
• src/hg/hubApi/tests/expected/test38.gz
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    2ca8c68595f3a083a0b6032ead19f6621529c4a2 Thu Apr 11 13:52:30 2019 -0700
    adding error testing refs #18869
• src/hg/hubApi/tests/jsonConsumer.pl
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    37b3bb1e0947b7ded663b992b1cded3c0ac784fb Tue Apr 9 15:26:25 2019 -0700
    adding trackLeavesOnly refs #18869
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    040e01004d8a558fc6d713141368a6393d022198 Wed Apr 10 14:46:54 2019 -0700
    now returning errors properly refs #18869
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    6827319273ffcfb7a42e9fe2a5cd1497fb5fd913 Wed Apr 10 15:15:08 2019 -0700
    eliminate registrationTime which may be different on other SQL servers refs #18869
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    c2d1cd482978db6bc12bafddc72e4131c3d15b9f Thu Apr 11 13:57:56 2019 -0700
    allow errors in parameters to pass thru to the call refs #18869
• src/hg/hubApi/tests/makefile
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    0222476b54fcfb70acb694f9819c9fbcbbeea7f8 Tue Apr 9 08:31:05 2019 -0700
    adding supported type rmsk refs #18869
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    e8bc6082872e9d16854282dd7affdc703b736023 Tue Apr 9 13:43:48 2019 -0700
    add sample getData for superTrack child refs #18869
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    aa2b841506a4ac562f3d054440caf4293ff3ef5a Tue Apr 9 15:24:45 2019 -0700
    adding trackLeavesOnly refs #18869
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    fe765adf8b12a7ce73c5290274f3d7c1b204ae0b Wed Apr 10 14:46:35 2019 -0700
    now returning errors properly refs #18869
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    0f08117c738abc8d206ac07f43c50545108c042e Wed Apr 10 15:00:00 2019 -0700
    allow different servers for testing refs #18869
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    2ca8c68595f3a083a0b6032ead19f6621529c4a2 Thu Apr 11 13:52:30 2019 -0700
    adding error testing refs #18869
• src/hg/hubApi/tests/pythonClient.py
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    b40e1e5ef457579374e7302da5e18151518b018a Wed Apr 10 16:17:51 2019 -0700
    Adding a bare bones python api client, currently relies on user to know which endpoints and arguments to use, raises a generic Exception if there is any problem, refs #18869
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    fe9156adb8aeb3add4a73a06c7ace15c2d246da8 Thu Apr 11 10:59:28 2019 -0700
    Python api client is slightly more robust, and should correctly report error responses from the api, refs #18869
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    ea5dfe97a03e1ec436780a2865fa886efe375e54 Thu Apr 11 12:07:39 2019 -0700
    Adding special test0 parameter to python api client, refs #18869
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    fa5b9b718f165eb212073c881c605057c129f933 Fri Apr 12 16:56:56 2019 -0700
    Forgot to add link to Ensembl python inspiration, no refs
• src/hg/makeDb/doc/hg19.txt
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/doc/hg38/hg38.txt
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/doc/hg38/patchUpdate.12.txt
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    16e9b95f19b004854554c583f341e16d496a7253 Wed Apr 10 10:21:06 2019 -0700
    Changing bigZips/latest from just a link to the most recent dir (p12) to a dir with versionless files, to make it easier for pipelines. refs #23198
• src/hg/makeDb/doc/mm10.txt
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes18.sh
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    de5eef93a7b575ab87180987773e142c2a545ef0 Mon Apr 8 11:20:47 2019 -0700
    add the mmBlastTab tables to the "other" databases
• src/hg/makeDb/outside/gencode/gencodeLoad.mk
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/schema/all.joiner
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/axolotl/ambMex2/description.html
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    58434a421c232372963681586e500ae0c0c97a18 Fri Apr 12 22:49:48 2019 -0700
    adding ambMex2 to the browser no redmine
• src/hg/makeDb/trackDb/axolotl/ambMex2/gap.html
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    58434a421c232372963681586e500ae0c0c97a18 Fri Apr 12 22:49:48 2019 -0700
    adding ambMex2 to the browser no redmine
• src/hg/makeDb/trackDb/axolotl/ambMex2/gold.html
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    58434a421c232372963681586e500ae0c0c97a18 Fri Apr 12 22:49:48 2019 -0700
    adding ambMex2 to the browser no redmine
• src/hg/makeDb/trackDb/axolotl/ambMex2/trackDb.ra
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    58434a421c232372963681586e500ae0c0c97a18 Fri Apr 12 22:49:48 2019 -0700
    adding ambMex2 to the browser no redmine
• src/hg/makeDb/trackDb/drosophila/bdtnpChipper.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/bdtnpChipperOld.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/chainAnoGam1.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/chainDp3.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/chainDroAna2.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/chainDroEre1.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/chainDroPer1.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/chainDroSec1.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/chainDroSim1.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/chainDroYak2.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/dm3/affyDrosDevSignal.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/dm3/affyDrosDevTransfrags.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/dm3/flyBaseGene.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/dm3/flyBaseNoncoding.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/dm3/multiz15way.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/dm3/phastConsElements15way.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/netAnoGam1.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/netDp3.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/netDroAna2.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/netDroEre1.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/netDroPer1.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/netDroSec1.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/netDroSim1.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/netDroYak2.html
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    b64eb6ca5ab75aa1700fbd9f4c8eec922c6a137b Wed Apr 10 09:59:35 2019 -0700
    Updating http to https and adding a port number to the Berkeley Drosophila transcription network project site for dm3, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg19/trackDb.gencode.ra
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV30lift37.html
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV30lift37.ra
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/human/hg38/description.html
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    1e40d7386a903a30f7efe862807a0a78349b4825 Mon Apr 8 14:09:09 2019 -0700
    Updating GB accession # for GRCh38.p12 after user pointed out it still had initial assembly acc. refs #23257
• src/hg/makeDb/trackDb/human/hg38/gdcCancer.html
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    63a290aef10710427de012bdfeed45924951e4d7 Wed Apr 10 14:54:50 2019 -0700
    add some preliminary HTML for the gdcCancer track
• src/hg/makeDb/trackDb/human/hg38/gdcCancer.ra
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    b18dedbef637679fdf72b86f2243954fa302aa1e Mon Apr 8 14:54:46 2019 -0700
    deal with NO_DATA situation in left labels of lollipops. Move the bigBed
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    c8c7f5c3d5b590e37dfd321d99b7dd3f1baaa3c1 Tue Apr 9 13:12:00 2019 -0700
    some tweaks to GDC cancer track, bigBed filters, and lollipop manual ranges
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    fbf37081f6a54cf8893907af0dac0516cacfdae6 Tue Apr 9 13:26:19 2019 -0700
    gdcCancer should be autoScale by default
• src/hg/makeDb/trackDb/human/hg38/mane.html
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    f60458991e24e246fd061ca1d4e6861585b0cd09 Mon Apr 8 15:14:12 2019 -0700
    Fixing minor things for code review #23271
• src/hg/makeDb/trackDb/human/hg38/mane.ra
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    9dad333b9969b85f1e4c67ffe25f603662eec35f Fri Apr 5 15:39:36 2019 -0700
    Add release tags in preparation for beta #23113
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    19c739a2ff610cd017fe60645fbb6e58765c9d91 Mon Apr 8 10:12:02 2019 -0700
    Removing release tags for RR release #23113
• src/hg/makeDb/trackDb/human/hg38/trackDb.gencode.ra
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeSuper.html
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV30.html
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV30.ra
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/makefile
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    58434a421c232372963681586e500ae0c0c97a18 Fri Apr 12 22:49:48 2019 -0700
    adding ambMex2 to the browser no redmine
• src/hg/makeDb/trackDb/mouse/mm10/cons60way.html
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    d7880d4570194bd583252958b3bedce55184ed58 Mon Apr 15 09:53:50 2019 -0700
    Updating http to http for mm10, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm10/genomicSuperDups.html
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    d7880d4570194bd583252958b3bedce55184ed58 Mon Apr 15 09:53:50 2019 -0700
    Updating http to http for mm10, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm10/knownGene.html
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    456e8f5497960a39f43295c4420a4a1cb7025fe2 Wed Apr 10 11:27:49 2019 -0700
    adding edits to knowGene.html for mm10 suggested in CR, #23269
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    d7880d4570194bd583252958b3bedce55184ed58 Mon Apr 15 09:53:50 2019 -0700
    Updating http to http for mm10, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm10/knownGeneOld10.html
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    b3c6dd1d7fa14910a4f4048288c8b427fdc3f2f2 Mon Apr 8 10:37:57 2019 -0700
    add knownGeneOld10.html to mm10
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.gencode.ra
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/mouse/mm10/vertebrateChainNet.html
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    d7880d4570194bd583252958b3bedce55184ed58 Mon Apr 15 09:53:50 2019 -0700
    Updating http to http for mm10, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeSuper.html
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
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    d7880d4570194bd583252958b3bedce55184ed58 Mon Apr 15 09:53:50 2019 -0700
    Updating http to http for mm10, uiLinks cronjob.
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM21.html
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM21.ra
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    1fd6ea4cb6bef2161c5fa1d951a8594d70eadcc9 Tue Apr 9 15:10:40 2019 -0700
    import of GENCODE V30, V30lift37 and VM21
• src/hg/makeDb/trackDb/qPcrPrimers.html
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    d7880d4570194bd583252958b3bedce55184ed58 Mon Apr 15 09:53:50 2019 -0700
    Updating http to http for mm10, uiLinks cronjob.
• src/hg/makeDb/trackDb/refSeqComposite.ra
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    4eac7e1d1e0aa730e53baa60c3b7437757ba7c6c Thu Apr 11 15:01:34 2019 -0700
    Fixing some refseq visilibity issues ref#22136
• src/inc/psGfx.h
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    5e0d7126131a8c596306e9480d48fcfa59e4884d Wed Apr 10 13:51:45 2019 -0700
    add postscript filled circle primitive
• src/lib/htmlPage.c
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    223c013640e84269c4da90621878cada08b3e931 Fri Apr 12 17:24:57 2019 -0700
    adding html5 new type search for input tag
• src/lib/htmshell.c
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    130da4c7702c81ce819af51601e36400c3afbcea Fri Apr 12 14:28:31 2019 -0700
    Updating jstree library version for hgCollection and hgHubConnect, refs #23296
• src/lib/psGfx.c
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    5e0d7126131a8c596306e9480d48fcfa59e4884d Wed Apr 10 13:51:45 2019 -0700
    add postscript filled circle primitive
• src/lib/pscmGfx.c
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    5e0d7126131a8c596306e9480d48fcfa59e4884d Wed Apr 10 13:51:45 2019 -0700
    add postscript filled circle primitive
• src/utils/qa/syncAday.csh
  • lines changed 1, context: html, text, full: html, text
    e7092e4425eaee7a161400e7b1a7af325809fe3b Fri Apr 12 09:03:09 2019 -0700
    Simplifying the syncAday cronjob output no RM
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    29190ca6a0c7c40c83a1142f4cebe423fbccf445 Mon Apr 15 09:54:47 2019 -0700
    v381 preview1, refs #23203
• src/utils/tdbRename
  • lines changed 3, context: html, text, full: html, text
    c81fd080454f88a6faf743e9913bf69db4817b41 Tue Apr 9 01:07:24 2019 -0700
    fix to tdbRename

• lines changed: 4097
• files changed: 180