All File Changes

v384_base to v385_preview (2019-07-01 to 2019-07-08) v385

• src/hg/cirm/gateway/htdocs/help/cirmBasics.html
  • lines changed 229, context: html, text, full: html, text
    a3f1ee27d3c5a5f09dab174b3ee71dff1df31031 Fri Jul 5 15:30:58 2019 -0700
    Adding help sections on metadata, metadata query tool, and example walking people through the steps of downloading an expression matrix and associated metadata tsv. Also adding images to many of the help sections. refs #21925 #23383
• src/hg/cirm/gateway/htdocs/images/cirmBasicsDownload.png
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    a3f1ee27d3c5a5f09dab174b3ee71dff1df31031 Fri Jul 5 15:30:58 2019 -0700
    Adding help sections on metadata, metadata query tool, and example walking people through the steps of downloading an expression matrix and associated metadata tsv. Also adding images to many of the help sections. refs #21925 #23383
• src/hg/cirm/gateway/htdocs/images/cirmBasicsFacets.png
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    a3f1ee27d3c5a5f09dab174b3ee71dff1df31031 Fri Jul 5 15:30:58 2019 -0700
    Adding help sections on metadata, metadata query tool, and example walking people through the steps of downloading an expression matrix and associated metadata tsv. Also adding images to many of the help sections. refs #21925 #23383
• src/hg/cirm/gateway/htdocs/images/cirmBasicsMetadataHtmlViewer.png
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    a3f1ee27d3c5a5f09dab174b3ee71dff1df31031 Fri Jul 5 15:30:58 2019 -0700
    Adding help sections on metadata, metadata query tool, and example walking people through the steps of downloading an expression matrix and associated metadata tsv. Also adding images to many of the help sections. refs #21925 #23383
• src/hg/cirm/gateway/htdocs/images/cirmBasicsMetadataLinks.png
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    a3f1ee27d3c5a5f09dab174b3ee71dff1df31031 Fri Jul 5 15:30:58 2019 -0700
    Adding help sections on metadata, metadata query tool, and example walking people through the steps of downloading an expression matrix and associated metadata tsv. Also adding images to many of the help sections. refs #21925 #23383
• src/hg/cirm/gateway/htdocs/images/cirmBasicsMetadataQuery.png
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    a3f1ee27d3c5a5f09dab174b3ee71dff1df31031 Fri Jul 5 15:30:58 2019 -0700
    Adding help sections on metadata, metadata query tool, and example walking people through the steps of downloading an expression matrix and associated metadata tsv. Also adding images to many of the help sections. refs #21925 #23383
• src/hg/cirm/gateway/htdocs/images/cirmBasicsMetadataQueryExample1.png
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    a3f1ee27d3c5a5f09dab174b3ee71dff1df31031 Fri Jul 5 15:30:58 2019 -0700
    Adding help sections on metadata, metadata query tool, and example walking people through the steps of downloading an expression matrix and associated metadata tsv. Also adding images to many of the help sections. refs #21925 #23383
• src/hg/cirm/gateway/htdocs/images/cirmBasicsNameCol.png
  • lines changed 0, context: html, text, full: html, text
    a3f1ee27d3c5a5f09dab174b3ee71dff1df31031 Fri Jul 5 15:30:58 2019 -0700
    Adding help sections on metadata, metadata query tool, and example walking people through the steps of downloading an expression matrix and associated metadata tsv. Also adding images to many of the help sections. refs #21925 #23383
• src/hg/cirm/gateway/htdocs/images/cirmBasicsSearchBox.png
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    a3f1ee27d3c5a5f09dab174b3ee71dff1df31031 Fri Jul 5 15:30:58 2019 -0700
    Adding help sections on metadata, metadata query tool, and example walking people through the steps of downloading an expression matrix and associated metadata tsv. Also adding images to many of the help sections. refs #21925 #23383
• src/hg/cirm/gateway/htdocs/images/cirmBasicsSingleFileDetails.png
  • lines changed 0, context: html, text, full: html, text
    a3f1ee27d3c5a5f09dab174b3ee71dff1df31031 Fri Jul 5 15:30:58 2019 -0700
    Adding help sections on metadata, metadata query tool, and example walking people through the steps of downloading an expression matrix and associated metadata tsv. Also adding images to many of the help sections. refs #21925 #23383
• src/hg/hgCustom/hgCustom.c
  • lines changed 1, context: html, text, full: html, text
    bb0fd9838396d159aeac3e7515923cf0918e4e19 Tue Jul 2 08:29:23 2019 -0700
    adding linebreak suggested by chmalee, refs #23703
• src/hg/hgTracks/hgTracks.c
  • lines changed 3, context: html, text, full: html, text
    21dc2336ca26affb02998997ca61a507cd7f302d Fri Jul 5 09:36:13 2019 -0700
    measure time of trackDb load separately from visibility settg
• src/hg/htdocs/FAQ/FAQgenes.html
  • lines changed 23, context: html, text, full: html, text
    8e20653bae737846c5025e987e37777f2a4f0f29 Tue Jul 2 10:52:21 2019 +0200
    tweaking Lou's excellent transcript download section a little in genes FAQ, refs #23748
  • lines changed 7, context: html, text, full: html, text
    d328b0a2a09c271ddaee177d6405fac096371dc4 Thu Jul 4 09:17:53 2019 -0700
    Updating FAQ on how we generate knownCanonical for hg38 #23748
• src/hg/htdocs/FAQ/FAQreleases.html
  • lines changed 2, context: html, text, full: html, text
    deb02f2f4bc7c691de4b5ccb398904b021f06ba8 Mon Jul 1 14:13:48 2019 -0700
    Swapping assembly order from CR #23752
• src/hg/htdocs/goldenPath/help/api.html
  • lines changed 2, context: html, text, full: html, text
    e01863f5b65ac24827ae2f471f6a1a9491dae454 Tue Jul 2 16:13:41 2019 -0700
    adding /list/schema/ function refs #23589
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html
  • lines changed 3, context: html, text, full: html, text
    0b9e0c5b054bc4ecf0438b5ccf8acf44db91aef6 Fri Jun 28 15:49:07 2019 -0700
    Add tableBrowser setting for hub. refs #23744
  • lines changed 3, context: html, text, full: html, text
    7b86137e9ac7753bca1229b27730d7aa18707390 Mon Jul 1 13:00:36 2019 -0700
    Hub support for trackDb 'tableBrowser' setting. refs #23744
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 1, context: html, text, full: html, text
    0b9e0c5b054bc4ecf0438b5ccf8acf44db91aef6 Fri Jun 28 15:49:07 2019 -0700
    Add tableBrowser setting for hub. refs #23744
  • lines changed 9, context: html, text, full: html, text
    7b86137e9ac7753bca1229b27730d7aa18707390 Mon Jul 1 13:00:36 2019 -0700
    Hub support for trackDb 'tableBrowser' setting. refs #23744
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 4, context: html, text, full: html, text
    5330311f9ba3e4a4ba14ff8e12748d7b2825b758 Mon Jul 1 10:48:16 2019 -0700
    Adding edits to dgvGold news release, #23371
• src/hg/htdocs/images/dgvGold-1.png
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    05a6eb44bbdc5d5599a2f830819c3ac148abcfb2 Mon Jul 1 10:51:13 2019 -0700
    removing old dgv image, refs #23371
• src/hg/htdocs/images/dgvGold.png
  • lines changed 0, context: html, text, full: html, text
    7d136cdec6203d93ce5ed46c04c6f9772cd04391 Mon Jul 1 11:03:33 2019 -0700
    Adding new image to dgv gold track. refs #23371
• src/hg/htdocs/images/jWestIcons47px.png
  • lines changed 0, context: html, text, full: html, text
    ccfa23e980a753c38db4a586b79238a8ca8fcca9 Tue Jul 2 09:06:07 2019 -0700
    Fixing colors of fly and worm icons, thanks Kate! refs #17956
• src/hg/htdocs/indexNews.html
  • lines changed 11, context: html, text, full: html, text
    05a6eb44bbdc5d5599a2f830819c3ac148abcfb2 Mon Jul 1 10:51:13 2019 -0700
    removing old dgv image, refs #23371
• src/hg/htdocs/singlecell.html
  • lines changed 3, context: html, text, full: html, text
    e5093b334fe57b5d09b70f5b37aee5c447b4666f Thu Jun 20 10:00:50 2019 -0700
    Rearranging encoded email to remove unneeded space in link. no redmine
• src/hg/htdocs/training/index.html
  • lines changed 43, context: html, text, full: html, text
    8d22111394657e0a5702070dda6468603bc0168e Fri Jun 28 15:18:35 2019 -0700
    removed completed eshg and amsterdam workshops. moved jax lab and grand rapids to near-term list and added mayo clinic and north carolina to long-rem list
• src/hg/hubApi/apiUtils.c
  • lines changed 95, context: html, text, full: html, text
    d1e16597846fc15d4388fc0625ce265aec2cd490 Tue Jul 2 16:02:00 2019 -0700
    adding new list function to show schema for a table with row count refs #23739
  • lines changed 1, context: html, text, full: html, text
    9d54db29580e26c13688de88701c61eae1aca9ce Wed Jul 3 10:55:21 2019 -0700
    add trackDb output to the list schema and allow tables without trackDb refs #23589
  • lines changed 17, context: html, text, full: html, text
    8a4758bc9826bad352cbce19052b01f28fb7171c Fri Jul 5 11:25:55 2019 -0700
    now allowing getData for any table in the database refs #23589
• src/hg/hubApi/dataApi.h
  • lines changed 3, context: html, text, full: html, text
    54cccf0e82a201f625bd5e4fcd90b87ffb6ba593 Mon Jul 1 14:13:36 2019 -0700
    eliminate one of the isSupportedType definitions refs #23760
  • lines changed 15, context: html, text, full: html, text
    d1e16597846fc15d4388fc0625ce265aec2cd490 Tue Jul 2 16:02:00 2019 -0700
    adding new list function to show schema for a table with row count refs #23739
  • lines changed 8, context: html, text, full: html, text
    8a4758bc9826bad352cbce19052b01f28fb7171c Fri Jul 5 11:25:55 2019 -0700
    now allowing getData for any table in the database refs #23589
• src/hg/hubApi/getData.c
  • lines changed 86, context: html, text, full: html, text
    d1e16597846fc15d4388fc0625ce265aec2cd490 Tue Jul 2 16:02:00 2019 -0700
    adding new list function to show schema for a table with row count refs #23739
  • lines changed 39, context: html, text, full: html, text
    8a4758bc9826bad352cbce19052b01f28fb7171c Fri Jul 5 11:25:55 2019 -0700
    now allowing getData for any table in the database refs #23589
• src/hg/hubApi/hubApi.c
  • lines changed 1, context: html, text, full: html, text
    d1e16597846fc15d4388fc0625ce265aec2cd490 Tue Jul 2 16:02:00 2019 -0700
    adding new list function to show schema for a table with row count refs #23739
  • lines changed 6, context: html, text, full: html, text
    1340926c015448621f1896176dbb3107f5468b28 Fri Jul 5 15:33:42 2019 -0700
    adding supported types altGraphX, barChart, chain refs #23589
  • lines changed 16, context: html, text, full: html, text
    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/hubApi/list.c
  • lines changed 252, context: html, text, full: html, text
    d1e16597846fc15d4388fc0625ce265aec2cd490 Tue Jul 2 16:02:00 2019 -0700
    adding new list function to show schema for a table with row count refs #23739
  • lines changed 86, context: html, text, full: html, text
    9d54db29580e26c13688de88701c61eae1aca9ce Wed Jul 3 10:55:21 2019 -0700
    add trackDb output to the list schema and allow tables without trackDb refs #23589
  • lines changed 9, context: html, text, full: html, text
    8a4758bc9826bad352cbce19052b01f28fb7171c Fri Jul 5 11:25:55 2019 -0700
    now allowing getData for any table in the database refs #23589
• src/hg/hubApi/tests/expected/altGraphX.gz
  • lines changed 0, context: html, text, full: html, text
    1340926c015448621f1896176dbb3107f5468b28 Fri Jul 5 15:33:42 2019 -0700
    adding supported types altGraphX, barChart, chain refs #23589
• src/hg/hubApi/tests/expected/barChart.gz
  • lines changed 0, context: html, text, full: html, text
    1340926c015448621f1896176dbb3107f5468b28 Fri Jul 5 15:33:42 2019 -0700
    adding supported types altGraphX, barChart, chain refs #23589
• src/hg/hubApi/tests/expected/chain.gz
  • lines changed 0, context: html, text, full: html, text
    1340926c015448621f1896176dbb3107f5468b28 Fri Jul 5 15:33:42 2019 -0700
    adding supported types altGraphX, barChart, chain refs #23589
• src/hg/hubApi/tests/expected/ctgPos.gz
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    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/hubApi/tests/expected/expRatio.gz
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    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/hubApi/tests/expected/factorSource.gz
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    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/hubApi/tests/expected/gvf.gz
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    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/hubApi/tests/expected/interact.gz
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    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/hubApi/tests/expected/list03.gz
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    9d5d89799225fb953a151a1857c13face8cfa274 Fri Jul 5 10:18:52 2019 -0700
    updated refSeq statistics for ce11 refs #23589
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    77c41ea0e794895ff4c259162ca00ffcc61733d1 Fri Jul 5 12:48:28 2019 -0700
    NCBI RefSeq track has changed its trackDb organization refs #23589
• src/hg/hubApi/tests/expected/list09.gz
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    9d5d89799225fb953a151a1857c13face8cfa274 Fri Jul 5 10:18:52 2019 -0700
    updated refSeq statistics for ce11 refs #23589
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    77c41ea0e794895ff4c259162ca00ffcc61733d1 Fri Jul 5 12:48:28 2019 -0700
    NCBI RefSeq track has changed its trackDb organization refs #23589
• src/hg/hubApi/tests/expected/netAlign.gz
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    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/hubApi/tests/expected/notSup03.gz
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    37de39f5a143219fcff375001349725305707144 Fri Jul 5 12:51:53 2019 -0700
    eliminate some debugging output in error message refs #23589
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    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/hubApi/tests/expected/notSup04.gz
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    37de39f5a143219fcff375001349725305707144 Fri Jul 5 12:51:53 2019 -0700
    eliminate some debugging output in error message refs #23589
• src/hg/hubApi/tests/expected/notSup05.gz
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    37de39f5a143219fcff375001349725305707144 Fri Jul 5 12:51:53 2019 -0700
    eliminate some debugging output in error message refs #23589
• src/hg/hubApi/tests/expected/notSup06.gz
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    37de39f5a143219fcff375001349725305707144 Fri Jul 5 12:51:53 2019 -0700
    eliminate some debugging output in error message refs #23589
• src/hg/hubApi/tests/expected/notSup09.gz
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    1340926c015448621f1896176dbb3107f5468b28 Fri Jul 5 15:33:42 2019 -0700
    adding supported types altGraphX, barChart, chain refs #23589
• src/hg/hubApi/tests/expected/notSup10.gz
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    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/hubApi/tests/expected/peptideMapping.gz
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    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/hubApi/tests/expected/pgSnp.gz
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    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/hubApi/tests/expected/schema01.gz
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    d1e16597846fc15d4388fc0625ce265aec2cd490 Tue Jul 2 16:02:00 2019 -0700
    adding new list function to show schema for a table with row count refs #23739
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    9d54db29580e26c13688de88701c61eae1aca9ce Wed Jul 3 10:55:21 2019 -0700
    add trackDb output to the list schema and allow tables without trackDb refs #23589
• src/hg/hubApi/tests/expected/schema02.gz
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    d1e16597846fc15d4388fc0625ce265aec2cd490 Tue Jul 2 16:02:00 2019 -0700
    adding new list function to show schema for a table with row count refs #23739
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    9d54db29580e26c13688de88701c61eae1aca9ce Wed Jul 3 10:55:21 2019 -0700
    add trackDb output to the list schema and allow tables without trackDb refs #23589
• src/hg/hubApi/tests/expected/schema03.gz
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    d1e16597846fc15d4388fc0625ce265aec2cd490 Tue Jul 2 16:02:00 2019 -0700
    adding new list function to show schema for a table with row count refs #23739
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    9d54db29580e26c13688de88701c61eae1aca9ce Wed Jul 3 10:55:21 2019 -0700
    add trackDb output to the list schema and allow tables without trackDb refs #23589
• src/hg/hubApi/tests/expected/schema04.gz
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    d1e16597846fc15d4388fc0625ce265aec2cd490 Tue Jul 2 16:02:00 2019 -0700
    adding new list function to show schema for a table with row count refs #23739
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    9d54db29580e26c13688de88701c61eae1aca9ce Wed Jul 3 10:55:21 2019 -0700
    add trackDb output to the list schema and allow tables without trackDb refs #23589
• src/hg/hubApi/tests/expected/schema05.gz
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    9d54db29580e26c13688de88701c61eae1aca9ce Wed Jul 3 10:55:21 2019 -0700
    add trackDb output to the list schema and allow tables without trackDb refs #23589
• src/hg/hubApi/tests/makefile
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    d1e16597846fc15d4388fc0625ce265aec2cd490 Tue Jul 2 16:02:00 2019 -0700
    adding new list function to show schema for a table with row count refs #23739
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    9d54db29580e26c13688de88701c61eae1aca9ce Wed Jul 3 10:55:21 2019 -0700
    add trackDb output to the list schema and allow tables without trackDb refs #23589
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    1340926c015448621f1896176dbb3107f5468b28 Fri Jul 5 15:33:42 2019 -0700
    adding supported types altGraphX, barChart, chain refs #23589
  • lines changed 76, context: html, text, full: html, text
    b419b8deda078f3e9aa2c245622f20b3bb2d2cb5 Fri Jul 5 16:17:44 2019 -0700
    adding support for track types ctgPos, expRatio, factorSource, gvf, interact, netAlign, peptideMapping, pgSnp refs #23589
• src/hg/lib/cartTrackDb.c
  • lines changed 10, context: html, text, full: html, text
    bac4732ecdf3a0c26b29b910e9d7e402c321477a Fri Jun 28 15:36:45 2019 -0700
    Allow tableBrowser setting in hubs. Requested for GeneHancer hub. refs #23744
• src/hg/lib/customTrack.c
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    bb0fd9838396d159aeac3e7515923cf0918e4e19 Tue Jul 2 08:29:23 2019 -0700
    adding linebreak suggested by chmalee, refs #23703
• src/hg/makeDb/doc/hg19.txt
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    3fd63f8af085564134cae5e8c3be6b6cb7adaa14 Sun Jul 7 16:08:45 2019 -0700
    import of GENCODE v31, v23lift37, and vM21
• src/hg/makeDb/doc/hg38/gencode.txt
  • lines changed 4, context: html, text, full: html, text
    3fd63f8af085564134cae5e8c3be6b6cb7adaa14 Sun Jul 7 16:08:45 2019 -0700
    import of GENCODE v31, v23lift37, and vM21
• src/hg/makeDb/doc/mm10.txt
  • lines changed 5, context: html, text, full: html, text
    3fd63f8af085564134cae5e8c3be6b6cb7adaa14 Sun Jul 7 16:08:45 2019 -0700
    import of GENCODE v31, v23lift37, and vM21
• src/hg/makeDb/doc/rheMac10/initialBuild.txt
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    c856e12e25aa93d1ec5095fbb720b6b564f4a550 Wed Jul 3 11:35:38 2019 -0700
    ready to start genbank run refs #23771
• src/hg/makeDb/genbank/etc/genbank.conf
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    24622f8a66ac8b9d69027bb98f83f8c1476f0454 Wed Jul 3 11:33:58 2019 -0700
    Added rheMac10 rhesus/Macaca mulatta; refs #23771
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 2, context: html, text, full: html, text
    a4540ad0810c27409d7ab0dd87b107282515a565 Wed Jul 3 11:35:00 2019 -0700
    Added rheMac10 - rhesus/Macaca mulatta refs #23771
• src/hg/makeDb/genbank/src/lib/gbGenome.c
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    da19177e31b13fd470b6a7e19f689095dd6930d0 Wed Jul 3 14:46:21 2019 -0700
    get genbank to see regenRn as a rat.
• src/hg/makeDb/outside/gencode/gencodeLoad.mk
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    3fd63f8af085564134cae5e8c3be6b6cb7adaa14 Sun Jul 7 16:08:45 2019 -0700
    import of GENCODE v31, v23lift37, and vM21
• src/hg/makeDb/schema/all.joiner
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    64ca0b57ba8357a2a2f402a182eda252d6cbfb70 Wed Jul 3 15:45:28 2019 -0700
    adding rules for rheMac10 and regenRn0 refs #23771 #21578
• src/hg/makeDb/trackDb/crisprAll.html
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    242cadb9e7b21f08168f2a2e347d60069372a9c4 Mon Jul 1 16:09:35 2019 -0700
    Correcting typos in crisprAll.html page #23514
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    3265eee7833f0ce97bf38bb585b7803d79640517 Wed Jul 3 13:52:22 2019 -0700
    Changing crisprAll track super to normal and adding a few tdb tags #23514
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    c672b62b59fdc40f5774c1210b74d670514e3130 Wed Jul 3 15:45:30 2019 -0700
    Adding cutting info and changing name for the crisprAll track #23514
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    5191e651985210540e1480f675ebb0b21f67b5e7 Mon Jul 8 09:10:43 2019 -0700
    Added cut site sentence and fixed typos crisprAll #23514
• src/hg/makeDb/trackDb/crisprAll.ra
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    f932e15b7bc03cc0361bf39bd0021c34b378a660 Wed Jul 3 09:58:14 2019 -0700
    score filter max is 100 for MIT scores refs #23514
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    a9d2ca6e689303f5e8ebf59f6f2ddb87f74dac4b Wed Jul 3 10:46:38 2019 -0700
    Adding denseCoverage, hiding regions for crisprAll #23514
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    3265eee7833f0ce97bf38bb585b7803d79640517 Wed Jul 3 13:52:22 2019 -0700
    Changing crisprAll track super to normal and adding a few tdb tags #23514
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    c672b62b59fdc40f5774c1210b74d670514e3130 Wed Jul 3 15:45:30 2019 -0700
    Adding cutting info and changing name for the crisprAll track #23514
• src/hg/makeDb/trackDb/drosophila/chainDp2.html
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    877f960fd702dbbe63f2102628d076ec0e50cb81 Wed Jul 3 08:52:46 2019 -0700
    Updating http to https for dm1, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/dm1/pscreen.html
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    877f960fd702dbbe63f2102628d076ec0e50cb81 Wed Jul 3 08:52:46 2019 -0700
    Updating http to https for dm1, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/mzDy1Dp2Ag1_phast.html
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    877f960fd702dbbe63f2102628d076ec0e50cb81 Wed Jul 3 08:52:46 2019 -0700
    Updating http to https for dm1, uiLinks cronjob.
• src/hg/makeDb/trackDb/drosophila/netDp2.html
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    877f960fd702dbbe63f2102628d076ec0e50cb81 Wed Jul 3 08:52:46 2019 -0700
    Updating http to https for dm1, uiLinks cronjob.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgSegmentation.html
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    964d1d24d84853e24cdb5bf5db3cee8525f2888b Wed Jul 3 09:28:28 2019 -0700
    Fix typo reported by Jason Ernst (contributor).
• src/hg/makeDb/trackDb/makefile
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    6f7f63b1f00e2c5d0191eca41a8de1c130f654ee Mon Jul 1 10:47:04 2019 -0700
    adding rheMac10 to the browesr refs #23751
• src/hg/makeDb/trackDb/rat/regenRn0/description.html
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    c1ef4d35073f984c5f6ebdf1383d935658ec0586 Mon Jul 1 13:50:41 2019 -0700
    initial files for regenRn0 refs #21579
• src/hg/makeDb/trackDb/rat/regenRn0/gap.html
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    c1ef4d35073f984c5f6ebdf1383d935658ec0586 Mon Jul 1 13:50:41 2019 -0700
    initial files for regenRn0 refs #21579
• src/hg/makeDb/trackDb/rat/regenRn0/gold.html
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    c1ef4d35073f984c5f6ebdf1383d935658ec0586 Mon Jul 1 13:50:41 2019 -0700
    initial files for regenRn0 refs #21579
• src/hg/makeDb/trackDb/rat/regenRn0/trackDb.chainNet.ra
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    470a11901c5a64af10f55df2b2cad2a81ee03b82 Tue Jul 2 10:52:38 2019 -0700
    display rn6 liftOver chain refs #21579
• src/hg/makeDb/trackDb/rat/regenRn0/trackDb.ra
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    c1ef4d35073f984c5f6ebdf1383d935658ec0586 Mon Jul 1 13:50:41 2019 -0700
    initial files for regenRn0 refs #21579
• src/hg/makeDb/trackDb/rat/rn6/trackDb.chainNet.ra
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    16f35703c1c1f8fbdf06e09ec90aa01326f39b33 Tue Jul 2 10:44:54 2019 -0700
    show liftOver chain for regenRn0 assembly refs #23771
• src/hg/makeDb/trackDb/refSeqComposite.ra
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    f11f577cf53dc95578ac41002be013dc11b61ad1 Tue Jul 2 11:52:35 2019 -0700
    RefSeqOther only indexed by name #23773 #23736
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    287b19c93b42f39fec456fd6733be92b78818215 Wed Jul 3 02:25:40 2019 -0700
    removing ncbi refseq views, as per Jim and Brian Lee, no redmine (yet)
• src/hg/makeDb/trackDb/rhesus/rheMac10/description.html
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    6f7f63b1f00e2c5d0191eca41a8de1c130f654ee Mon Jul 1 10:47:04 2019 -0700
    adding rheMac10 to the browesr refs #23751
• src/hg/makeDb/trackDb/rhesus/rheMac10/gap.html
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    6f7f63b1f00e2c5d0191eca41a8de1c130f654ee Mon Jul 1 10:47:04 2019 -0700
    adding rheMac10 to the browesr refs #23751
• src/hg/makeDb/trackDb/rhesus/rheMac10/gold.html
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    6f7f63b1f00e2c5d0191eca41a8de1c130f654ee Mon Jul 1 10:47:04 2019 -0700
    adding rheMac10 to the browesr refs #23751
• src/hg/makeDb/trackDb/rhesus/rheMac10/trackDb.ra
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    6f7f63b1f00e2c5d0191eca41a8de1c130f654ee Mon Jul 1 10:47:04 2019 -0700
    adding rheMac10 to the browesr refs #23751
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    05c5734e6f4612a0d1309dc976e0c1786230cd19 Wed Jul 3 11:36:23 2019 -0700
    turn on NCBI RefSeq track and add search rule for gold/assembly track refs #23771
• src/hg/makeDb/trackDb/tagTypes.tab
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    453058da3cf6d6ac12c21d517ae81e1eb6ae38b6 Wed Jul 3 10:41:11 2019 -0700
    Adding denseCoverage tag to list, #23514
• src/hg/makeDb/trackDb/trackDb.ra
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    a40ef62f446a7519fc76643d2a0d2ee8febc4135 Wed Jul 3 11:08:01 2019 -0700
    changed yellow color to nearly match darker color of longLabel. refs #23776
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    32634c1473ce35f8fe7ad23f8a0a1dd2e1a7e26a Wed Jul 3 11:47:12 2019 -0700
    Removing release tags for crisprAll on RR #23514
• src/hg/makeDb/trackDb/trackDb.transMap.ra
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    235b3515cdb4f7f73987692bc41e8006a16b181b Thu Jul 4 15:35:42 2019 -0700
    Updating visibilities and descriptions for new V5 transMap #23729
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    bb98a72134bf91feda97ed3cb163a7b6880f2eeb Fri Jul 5 10:41:19 2019 -0700
    Adding versioning files for transMap track #23729
• src/hg/makeDb/trackDb/transMapTailer.html
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    0c04b1cdeb2453a69da42683252e4285d0838362 Thu Jul 4 11:38:28 2019 -0700
    Expanding transMap data access section #23629
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    9bd775a156a382caf90b876924c333e656c4de4c Thu Jul 4 14:26:04 2019 -0700
    Fixing little typo #23629
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    235b3515cdb4f7f73987692bc41e8006a16b181b Thu Jul 4 15:35:42 2019 -0700
    Updating visibilities and descriptions for new V5 transMap #23729
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    bb98a72134bf91feda97ed3cb163a7b6880f2eeb Fri Jul 5 10:41:19 2019 -0700
    Adding versioning files for transMap track #23729
• src/hg/makeDb/trackDb/transMapTailerV5.html
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    bb98a72134bf91feda97ed3cb163a7b6880f2eeb Fri Jul 5 10:41:19 2019 -0700
    Adding versioning files for transMap track #23729
• src/hg/makeDb/trackDb/transMapV5.html
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    bb98a72134bf91feda97ed3cb163a7b6880f2eeb Fri Jul 5 10:41:19 2019 -0700
    Adding versioning files for transMap track #23729
• src/hg/utils/automation/HgAutomate.pm
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    ee52e0807335ddc96c4455fbcb693140e2f82ce0 Wed Jul 3 09:34:49 2019 -0700
    remove kolossus from the list of machines to check for workhorse no redmine
• src/hg/utils/refSeqGet/tests/expected/basicListTest.gp
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    1cdfe94ab311e56038baad6533c908a10bcdd2a5 Wed Jul 3 15:49:08 2019 -0700
    RefSeq updated NM_201634.4 to NM_201634.5; update refSeqGet test files accordingly.
• src/hg/utils/refSeqGet/tests/expected/basicListTest.meta
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    1cdfe94ab311e56038baad6533c908a10bcdd2a5 Wed Jul 3 15:49:08 2019 -0700
    RefSeq updated NM_201634.4 to NM_201634.5; update refSeqGet test files accordingly.
• src/hg/utils/refSeqGet/tests/expected/basicListTest.psl
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    1cdfe94ab311e56038baad6533c908a10bcdd2a5 Wed Jul 3 15:49:08 2019 -0700
    RefSeq updated NM_201634.4 to NM_201634.5; update refSeqGet test files accordingly.
• src/hg/utils/refSeqGet/tests/expected/basicListTest.rna.fa
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    1cdfe94ab311e56038baad6533c908a10bcdd2a5 Wed Jul 3 15:49:08 2019 -0700
    RefSeq updated NM_201634.4 to NM_201634.5; update refSeqGet test files accordingly.
• src/utils/qa/weeklybld/buildEnv.csh
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    0f3d52e435190fed54683e910af936fccaa24991 Mon Jul 8 09:54:57 2019 -0700
    v385 preview1, refs #23695

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