All File Changes

v390_preview to v390_preview2 (2019-10-21 to 2019-10-28) v390

• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 187, context: html, text, full: html, text
    61186725079e7333ee22fa763ffdf3dc9598c9b3 Wed Oct 23 10:40:48 2019 -0700
    Deleting some unused functions from hgHubConnect now that the new jstree print functions are in place, refs #24223
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 49, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 12, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/hgTracks/hgTracks.c
  • lines changed 30, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/hgTracks/hgTracks.h
  • lines changed 6, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/hgTracks/simpleTracks.c
  • lines changed 9, context: html, text, full: html, text
    71b592154f2821cc5148993588e93e773915e084 Tue Apr 23 12:00:05 2019 -0700
    Fix the way that scaledBoxToPixelCoords treats 0-length insertion items. refs #23283 This didn't affect the snp tracks because they have their own drawItemAt, nor bigBed because bedDrawSimpleAt uses hvGfxBox and linkedFeaturesDrawAt has a special case for start==end. But now the bigDbSnp drawing code will use scaledBoxToPixelCoords.
  • lines changed 6, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/hgTracks/variation.c
  • lines changed 476, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/hgTracks/variation.h
  • lines changed 10, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/hgc/bigBedClick.c
  • lines changed 25, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/hgc/bigDbSnpClick.c
  • lines changed 451, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/hgc/hgc.c
  • lines changed 7, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/hgc/hgc.h
  • lines changed 6, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/hgc/interactClick.c
  • lines changed 5, context: html, text, full: html, text
    9c15035e29d9bf53c075b322e122e1d91401389f Mon Oct 21 10:21:42 2019 -0700
    Display note about multi-region vis effect only when in mr mode. refs #24037
• src/hg/hgc/makefile
  • lines changed 2, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/htdocs/FAQ/FAQblat.html
  • lines changed 20, context: html, text, full: html, text
    9b91a6fbcf3a07ebc877ff9fa7a8d2f59598ab00 Thu Oct 24 16:19:36 2019 -0700
    Changing verb and capitalization for CR #24347
• src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html
  • lines changed 6, context: html, text, full: html, text
    c1af5058b92082ad2a796371e9732e92ca205066 Mon Oct 21 15:33:48 2019 -0700
    Adding session links requested in Code Review input
• src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
  • lines changed 5, context: html, text, full: html, text
    7944bbaa4529de04a6b2081196a166b3a5f6eee4 Mon Oct 21 10:51:27 2019 -0700
    Add new setting to customize label on UI page when using hideEMptySubtracks. refs #23365
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html
  • lines changed 5, context: html, text, full: html, text
    7944bbaa4529de04a6b2081196a166b3a5f6eee4 Mon Oct 21 10:51:27 2019 -0700
    Add new setting to customize label on UI page when using hideEMptySubtracks. refs #23365
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 10, context: html, text, full: html, text
    7944bbaa4529de04a6b2081196a166b3a5f6eee4 Mon Oct 21 10:51:27 2019 -0700
    Add new setting to customize label on UI page when using hideEMptySubtracks. refs #23365
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 35, context: html, text, full: html, text
    db0069c4d3afe0e0834345b4665f62995cee8115 Thu Oct 24 14:46:54 2019 -0700
    Adding newsArch for Hic/Plat tracks #24273
  • lines changed 8, context: html, text, full: html, text
    9b91a6fbcf3a07ebc877ff9fa7a8d2f59598ab00 Thu Oct 24 16:19:36 2019 -0700
    Changing verb and capitalization for CR #24347
  • lines changed 19, context: html, text, full: html, text
    9cf69817d6de08056df3fddfb083b44744d1582d Fri Oct 25 12:58:23 2019 -0700
    Announcing the Illumina GDA track for hg19, refs #24320
  • lines changed 15, context: html, text, full: html, text
    95b7be2e55bbb69c9a0e8666925830942c923639 Fri Oct 25 13:54:24 2019 -0700
    Adding news entry for hic and plat tracks #24273 #21784
  • lines changed 34, context: html, text, full: html, text
    17b98907132a6bf487334f6ed3ae35b9bbe0d08a Fri Oct 25 14:00:40 2019 -0700
    Fixing merge conflict
  • lines changed 2, context: html, text, full: html, text
    76c393d4a9130864fb06fc0c602cfcc483dc856f Fri Oct 25 14:26:08 2019 -0700
    Fixing the HTML anchors for the two anouncements made today, no Redmine.
  • lines changed 1, context: html, text, full: html, text
    ab9cde66090f94afff148b8e35f027c24b4d49c1 Fri Oct 25 15:51:00 2019 -0700
    Fixing typo #24273
  • lines changed 33, context: html, text, full: html, text
    e82a4ac369531f6515abf4f605a679e00578cb31 Fri Oct 25 16:38:07 2019 -0700
    News release for gnomAD refs #21782
• src/hg/htdocs/images/hicExample.png
  • lines changed 0, context: html, text, full: html, text
    86261527a803cfb4f721b42acd11f4aa88b6d4f2 Thu Oct 24 14:44:19 2019 -0700
    Adding image for HiC announcement #24273
• src/hg/htdocs/indexNews.html
  • lines changed 13, context: html, text, full: html, text
    5a3e107110d2aac8af3a4aa9e7dc9000d09edea4 Thu Oct 24 13:47:21 2019 -0700
    Adding announcements for Hic/Plat tracks #24273
  • lines changed 10, context: html, text, full: html, text
    9cf69817d6de08056df3fddfb083b44744d1582d Fri Oct 25 12:58:23 2019 -0700
    Announcing the Illumina GDA track for hg19, refs #24320
  • lines changed 1, context: html, text, full: html, text
    98af76a8ed95d01c89948338a8401ecd5cff7adf Fri Oct 25 13:26:23 2019 -0700
    Fixing some missing closing </a> and </div> tags, refs #24320
  • lines changed 12, context: html, text, full: html, text
    95b7be2e55bbb69c9a0e8666925830942c923639 Fri Oct 25 13:54:24 2019 -0700
    Adding news entry for hic and plat tracks #24273 #21784
  • lines changed 18, context: html, text, full: html, text
    17b98907132a6bf487334f6ed3ae35b9bbe0d08a Fri Oct 25 14:00:40 2019 -0700
    Fixing merge conflict
  • lines changed 2, context: html, text, full: html, text
    76c393d4a9130864fb06fc0c602cfcc483dc856f Fri Oct 25 14:26:08 2019 -0700
    Fixing the HTML anchors for the two anouncements made today, no Redmine.
  • lines changed 13, context: html, text, full: html, text
    e82a4ac369531f6515abf4f605a679e00578cb31 Fri Oct 25 16:38:07 2019 -0700
    News release for gnomAD refs #21782
• src/hg/htdocs/style/HGStyle.css
  • lines changed 1, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/htdocs/training/index.html
  • lines changed 36, context: html, text, full: html, text
    f782dc9a900d49a0e6019698f370052fa8f1ea7f Fri Oct 25 14:01:35 2019 -0700
    removed completed ashg, mayo workshops. move pag, unc to active list. added slovenia, hgsa
• src/hg/inc/bigDbSnp.h
  • lines changed 13, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/inc/hui.h
  • lines changed 2, context: html, text, full: html, text
    7944bbaa4529de04a6b2081196a166b3a5f6eee4 Mon Oct 21 10:51:27 2019 -0700
    Add new setting to customize label on UI page when using hideEMptySubtracks. refs #23365
  • lines changed 6, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/inc/trackDb.h
  • lines changed 10, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/lib/bigDbSnp.c
  • lines changed 178, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/lib/customFactory.c
  • lines changed 17, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/lib/hAnno.c
  • lines changed 4, context: html, text, full: html, text
    171a5b44a2fa8be1dc747bbd8d620c713edd7027 Wed Oct 23 11:02:22 2019 -0700
    Now that saved session custom track table names can have a customData db prefix (like db=customTrash and table=customDataNN.t1_...), asObjectFromFields needs to skip past the dot to avoid autoSql parse error. refs #24358.
• src/hg/lib/hui.c
  • lines changed 3, context: html, text, full: html, text
    7944bbaa4529de04a6b2081196a166b3a5f6eee4 Mon Oct 21 10:51:27 2019 -0700
    Add new setting to customize label on UI page when using hideEMptySubtracks. refs #23365
  • lines changed 147, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
  • lines changed 3, context: html, text, full: html, text
    b5e62153da4e34f2bd670a088adfd1e77afb9760 Tue Oct 15 10:14:57 2019 -0700
    hui: added link to ucscNotes description, thx Lou refs #23283
• src/hg/lib/trackDbCustom.c
  • lines changed 39, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/lib/trackHub.c
  • lines changed 1, context: html, text, full: html, text
    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/hg/lib/wiggleCart.c
  • lines changed 8, context: html, text, full: html, text
    84c72a0b98ac521ed93dc5df4d321e75f69c1c9b Thu Oct 24 18:08:19 2019 -0700
    add trackDb setting "autoScale group"
• src/hg/makeDb/doc/bigDbSnp.txt
  • lines changed 132, context: html, text, full: html, text
    aa6795a2461f1356b09ce782be1f979f7edbab9b Thu Oct 10 14:15:07 2019 -0700
    dbSnp152, dbSnp153: Count up how many distinct rsIDs got frequency counts from each source; also how many times each ucscNote was added. refs #23283
  • lines changed 12, context: html, text, full: html, text
    ca3f7e9e7bebb3ea6f35844fc03c90a988eb1330 Fri Oct 18 15:02:51 2019 -0700
    bigDbSnp: add Common, ClinVar, Mult subset tracks to bigBed and install steps. refs #23283
• src/hg/makeDb/doc/encode3/mouse.txt
  • lines changed 31, context: html, text, full: html, text
    679876d6a512dd86f698530e6f2ff17506a21988 Mon Oct 21 10:56:45 2019 -0700
    Add make doc for multiBed file. refs #23693
• src/hg/makeDb/doc/hg19.txt
  • lines changed 1, context: html, text, full: html, text
    435fbceebeaddec93ebca4eaa50b20123967a285 Fri Oct 25 11:40:25 2019 -0700
    LRG: if source URL is missing a protocol, prepend http:// . Thx Jairo. refs #24285
• src/hg/makeDb/doc/hg38/hg38.txt
  • lines changed 1, context: html, text, full: html, text
    435fbceebeaddec93ebca4eaa50b20123967a285 Fri Oct 25 11:40:25 2019 -0700
    LRG: if source URL is missing a protocol, prepend http:// . Thx Jairo. refs #24285
• src/hg/makeDb/trackDb/human/dbSnp152.html
  • lines changed 23, context: html, text, full: html, text
    895644af226dd57285d4b0469da87dc34df76e5e Thu Oct 24 13:55:25 2019 -0700
    trackDb and descriptions for new tracks dbSnp152* and dbSnp153*. tagTypes changes for bigDbSnp type (and subsequent big* types). refs #23283
• src/hg/makeDb/trackDb/human/dbSnp152.shared.html
  • lines changed 324, context: html, text, full: html, text
    895644af226dd57285d4b0469da87dc34df76e5e Thu Oct 24 13:55:25 2019 -0700
    trackDb and descriptions for new tracks dbSnp152* and dbSnp153*. tagTypes changes for bigDbSnp type (and subsequent big* types). refs #23283
• src/hg/makeDb/trackDb/human/dbSnp153Composite.html
  • lines changed 392, context: html, text, full: html, text
    895644af226dd57285d4b0469da87dc34df76e5e Thu Oct 24 13:55:25 2019 -0700
    trackDb and descriptions for new tracks dbSnp152* and dbSnp153*. tagTypes changes for bigDbSnp type (and subsequent big* types). refs #23283
• src/hg/makeDb/trackDb/human/hg19/hic.ra
  • lines changed 1, context: html, text, full: html, text
    acc3b60957b4f17b793822b533ad7120d91f39b4 Fri Oct 25 14:13:45 2019 -0700
    Adding pennantIcons
• src/hg/makeDb/trackDb/human/hg19/platinumGenomes.ra
  • lines changed 0, context: html, text, full: html, text
    2c3f77f036f79054a7bb826bb9521a10de11d9d1 Thu Oct 24 17:39:27 2019 -0700
    added indent on platinum subtracks
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    acc3b60957b4f17b793822b533ad7120d91f39b4 Fri Oct 25 14:13:45 2019 -0700
    Adding pennantIcons
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    9cf69817d6de08056df3fddfb083b44744d1582d Fri Oct 25 12:58:23 2019 -0700
    Announcing the Illumina GDA track for hg19, refs #24320
• src/hg/makeDb/trackDb/human/hg38/gnomad.html
  • lines changed 21, context: html, text, full: html, text
    b3360a065edede4b98517c16e5fca5a2e57e9c83 Wed Oct 23 10:49:32 2019 -0700
    Expanding gnomAD html to incude v3 refs #21782
  • lines changed 3, context: html, text, full: html, text
    4cd41d984459d98a56e5971b7a5cd004fe56eae0 Wed Oct 23 16:22:56 2019 -0700
    Adding link to gnomAD FAQ refs #21782
  • lines changed 1, context: html, text, full: html, text
    5401d5b9fe3c046930f44d3767511d700d798ad4 Thu Oct 24 10:25:51 2019 -0700
    Fixing download server link refs #21782
• src/hg/makeDb/trackDb/human/hg38/gnomad.ra
  • lines changed 53, context: html, text, full: html, text
    f85212300b9ed61174504d34b9aaa7b5b890bccb Wed Oct 23 12:21:12 2019 -0700
    Reconfig as supertrack to distinguish versions better. refs #21782
  • lines changed 6, context: html, text, full: html, text
    22dd2d96962d0d6354c9265e8ff9992a232641e0 Wed Oct 23 14:55:23 2019 -0700
    Label polishing, thanks for input from Angie and Lou. refs #21782
  • lines changed 1, context: html, text, full: html, text
    ae87497776b039307b2beb99ac330af4ece7b059 Wed Oct 23 15:12:00 2019 -0700
    Tweak track name, Lou catch. refs #21782
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    8cd3aa89687899f1e5c38a206fb7b8287e603b39 Fri Oct 25 16:39:51 2019 -0700
    Staging gnomAD for release refs #21782
• src/hg/makeDb/trackDb/human/hg38/hic.ra
  • lines changed 1, context: html, text, full: html, text
    acc3b60957b4f17b793822b533ad7120d91f39b4 Fri Oct 25 14:13:45 2019 -0700
    Adding pennantIcons
• src/hg/makeDb/trackDb/human/hg38/platinumGenomes.ra
  • lines changed 0, context: html, text, full: html, text
    2c3f77f036f79054a7bb826bb9521a10de11d9d1 Thu Oct 24 17:39:27 2019 -0700
    added indent on platinum subtracks
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    acc3b60957b4f17b793822b533ad7120d91f39b4 Fri Oct 25 14:13:45 2019 -0700
    Adding pennantIcons
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    2c367a5ac8e70ad5f5bc602796d7cd93858e7862 Mon Oct 21 17:42:37 2019 -0700
    Added V3 subtrack. refs #21782
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    f85212300b9ed61174504d34b9aaa7b5b890bccb Wed Oct 23 12:21:12 2019 -0700
    Reconfig as supertrack to distinguish versions better. refs #21782
• src/hg/makeDb/trackDb/human/lrg.html
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    582f5ea34df7defd80c6ea88ff7cd8a845441506 Thu Oct 24 16:28:34 2019 -0700
    Updating a redirected link on the lrg track, refs #24285
• src/hg/makeDb/trackDb/human/lrgTranscriptAli.html
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    ed5ce60aead88beb9296ead6b2a47def40086f89 Thu Oct 24 16:34:16 2019 -0700
    Udpating a redirected link for the LRG track for hg38 and hg19, refs #24285
• src/hg/makeDb/trackDb/human/platinumGenomes.html
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    5f617d990059439767626d96989a585e42a9e7fd Fri Oct 25 14:41:48 2019 -0700
    Fixing references to proper style #24274?
• src/hg/makeDb/trackDb/human/trackDb.ra
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    4b5030cff80de219cb3f7c6dbdcbf20dfc8be32f Wed Oct 23 11:23:13 2019 -0700
    Add EPDNew human tracks. refs #23888
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    895644af226dd57285d4b0469da87dc34df76e5e Thu Oct 24 13:55:25 2019 -0700
    trackDb and descriptions for new tracks dbSnp152* and dbSnp153*. tagTypes changes for bigDbSnp type (and subsequent big* types). refs #23283
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    eabb4ea5eba0b93002ed83226973ad81b40040f8 Fri Oct 25 11:00:39 2019 -0700
    Fixing a broken link to the HUGO website, refs #24285
• src/hg/makeDb/trackDb/lamprey/petMar2/cons7way.html
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    b07aa939acec39abd778d5f51ea8c153382f6d43 Tue Oct 22 10:10:19 2019 -0700
    Updating redirected links found by the uiLinks cronjob for petMar2, no Redmine.
• src/hg/makeDb/trackDb/lamprey/petMar2/lampreyGene.html
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    b07aa939acec39abd778d5f51ea8c153382f6d43 Tue Oct 22 10:10:19 2019 -0700
    Updating redirected links found by the uiLinks cronjob for petMar2, no Redmine.
• src/hg/makeDb/trackDb/macaca/macFas5/trackDb.chainNet.ra
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    564c88137809e6bc63e7c004103cc210a66562f3 Mon Oct 21 11:19:26 2019 -0700
    shortLabel hg19 for chainNet/lastz refs #21579
• src/hg/makeDb/trackDb/mouse/mm10/encode3.histone.ra
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    6e44ce927316cdf3d041412e2aec6aaffd75ba34 Mon Oct 21 10:53:32 2019 -0700
    Customize UI label for hide empty subtracks. refs #23693
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
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    0993214d5e75e1400db5ef357b42334e40ca7623 Wed Oct 23 15:37:23 2019 -0700
    Updating the links for rsIDs on the mouse SNP details page, refs #24357
• src/hg/makeDb/trackDb/mouse/mm8/defaultPriority.ra
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    0993214d5e75e1400db5ef357b42334e40ca7623 Wed Oct 23 15:37:23 2019 -0700
    Updating the links for rsIDs on the mouse SNP details page, refs #24357
• src/hg/makeDb/trackDb/mouse/mm9/defaultPriority.ra
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    0993214d5e75e1400db5ef357b42334e40ca7623 Wed Oct 23 15:37:23 2019 -0700
    Updating the links for rsIDs on the mouse SNP details page, refs #24357
• src/hg/makeDb/trackDb/mouse/trackDb.ra
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    0993214d5e75e1400db5ef357b42334e40ca7623 Wed Oct 23 15:37:23 2019 -0700
    Updating the links for rsIDs on the mouse SNP details page, refs #24357
• src/hg/makeDb/trackDb/pig/susScr11/trackDb.chainNet.ra
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    4b2477a81e8bc4011dc494472ea86b39f9d9612d Mon Oct 21 10:32:40 2019 -0700
    shortLabel hg19 for chainNet/lastz refs #21579
• src/hg/makeDb/trackDb/squirt/ci1/jgiGene.html
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    e2388683b7d1aaa26168ce3519ac1cb806509d63 Wed Oct 23 08:11:33 2019 -0700
    Updating http to https for ci1, uiLinks cronjob.
• src/hg/makeDb/trackDb/tagTypes.tab
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    7944bbaa4529de04a6b2081196a166b3a5f6eee4 Mon Oct 21 10:51:27 2019 -0700
    Add new setting to customize label on UI page when using hideEMptySubtracks. refs #23365
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    895644af226dd57285d4b0469da87dc34df76e5e Thu Oct 24 13:55:25 2019 -0700
    trackDb and descriptions for new tracks dbSnp152* and dbSnp153*. tagTypes changes for bigDbSnp type (and subsequent big* types). refs #23283
• src/hg/utils/automation/doBigDbSnp.pl
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    ca3f7e9e7bebb3ea6f35844fc03c90a988eb1330 Fri Oct 18 15:02:51 2019 -0700
    bigDbSnp: add Common, ClinVar, Mult subset tracks to bigBed and install steps. refs #23283
• src/hg/utils/automation/parseLrgXml.pl
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    435fbceebeaddec93ebca4eaa50b20123967a285 Fri Oct 25 11:40:25 2019 -0700
    LRG: if source URL is missing a protocol, prepend http:// . Thx Jairo. refs #24285
• src/inc/dnautil.h
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    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/lib/dnautil.c
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    d3752edc12da1bf08427946150f564dbdd5d2254 Thu Oct 24 13:55:51 2019 -0700
    bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.
• src/utils/bedToBigBed/tests/makefile
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    e518d84a8ab178f544529f920ad017495e056011 Sat Oct 26 14:16:34 2019 -0700
    allow tests to run in parallel
• src/utils/qa/weeklybld/buildEnv.csh
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    825f0e3803ea8629e286a5951f58b679bda8018b Mon Oct 21 09:56:11 2019 -0700
    v390 preview1, refs #24238
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    3021aa7b828c323b3cd114242a55539052d25678 Mon Oct 28 08:52:01 2019 -0700
    v390 preview2

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