All File Changes
v301_preview to v301_preview2 (2014-05-26 to 2014-06-02) v301
- src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit
- lines changed 0, context: html, text, full: html, text
Bug 1481 Rephrase submission email message per Brian's note 12
- lines changed 0, context: html, text, full: html, text
remove the edwSubmit binary from git
- src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c
- lines changed 11, context: html, text, full: html, text
Bug 1481 Rephrase submission email message per Brian's note 12
- src/hg/encode3/encodeDataWarehouse/edwWebBrowse/edwWebBrowse.c
- lines changed 61, context: html, text, full: html, text
encode bug 1481edwWebSubmit issue when multiple URL/users submit same validated.txt
- lines changed 7, context: html, text, full: html, text
Bug 1481 Rephrase submission display per Brian's note 12
- src/hg/encode3/encodeDataWarehouse/utils/edwSolexaToSangerFastq/edwSolexaToSangerFastq.c
- src/hg/genePredToBed/genePredToBed.c
- lines changed 6, context: html, text, full: html, text
fixing CDS problem in genePredToBed
- lines changed 6, context: html, text, full: html, text
taking back two changes from earlier today to genePredToBed.c and bed.cafter I realized (and reminded by Braney) that the problem was entirely
different.
- src/hg/hgGateway/hgGateway.c
- lines changed 1, context: html, text, full: html, text
clean up some code for opening trackHubs, removed hgHubConnectCgiDestUrlcart variable, added ability to tell CGI's to default to a particular
database supported by a hub
- src/hg/hgHubConnect/hgHubConnect.c
- lines changed 2, context: html, text, full: html, text
some code clean-ups in response to code review
- lines changed 9, context: html, text, full: html, text
some small fixes for hub search ui
- lines changed 4, context: html, text, full: html, text
clean up some code for opening trackHubs, removed hgHubConnectCgiDestUrlcart variable, added ability to tell CGI's to default to a particular
database supported by a hub
- lines changed 19, context: html, text, full: html, text
change the linkouts on hgHubConnect to pointt to hub.txt for shortLabeland to descriptionUrl for longLabel
- src/hg/hgTables/mainPage.c
- lines changed 1, context: html, text, full: html, text
clean up some code for opening trackHubs, removed hgHubConnectCgiDestUrlcart variable, added ability to tell CGI's to default to a particular
database supported by a hub
- src/hg/hgTracks/encode.c
- lines changed 1, context: html, text, full: html, text
Show ENCODE peaks full height if no peak summit is shown. refs #13305
- src/hg/hgTracks/hgTracks.c
- lines changed 1, context: html, text, full: html, text
clean up some code for opening trackHubs, removed hgHubConnectCgiDestUrlcart variable, added ability to tell CGI's to default to a particular
database supported by a hub
- src/hg/hgTracks/multiWig.c
- src/hg/hgTracks/simpleTracks.c
- lines changed 10, context: html, text, full: html, text
Accidentally removed pgSnp tracks' dense mode left labels in a430d3db1;adding them back now.
refs #13220, fixes #13344
- src/hg/hgTracks/snakeTrack.c
- lines changed 1, context: html, text, full: html, text
fix border case in snake drawing that Dent and Ben found
- src/hg/hgTracks/wigCommon.h
- src/hg/hgTracks/wigTrack.c
- src/hg/hgVai/hgVai.c
- lines changed 5, context: html, text, full: html, text
clean up some code for opening trackHubs, removed hgHubConnectCgiDestUrlcart variable, added ability to tell CGI's to default to a particular
database supported by a hub
- src/hg/hgVarAnnogrator/hgVarAnnogrator.c
- lines changed 1, context: html, text, full: html, text
clean up some code for opening trackHubs, removed hgHubConnectCgiDestUrlcart variable, added ability to tell CGI's to default to a particular
database supported by a hub
- src/hg/hgc/hgc.c
- lines changed 30, context: html, text, full: html, text
Add mapping of ids to names for extra fields. Reusing the extra fields code instead of adding track-specific code. refs #13230
- lines changed 51, context: html, text, full: html, text
Cleanup to isolate id/name mapping code. refs #13230
- src/hg/htdocs/FAQ/FAQformat.html
- lines changed 2, context: html, text, full: html, text
adding note about thickStart/thickEnd to BED FAQ
- src/hg/htdocs/goldenPath/help/gbib.html
- lines changed 10, context: html, text, full: html, text
Adding note about auto updates being slow on DSL lines, recommend turning them off. Fixing up note about ways to potentially fix a broken GBiB, refs #12843
- lines changed 2, context: html, text, full: html, text
removed mention of auto-update interval. refs #12843
- src/hg/htdocs/goldenPath/help/hgQuickStartHub.html
- lines changed 6, context: html, text, full: html, text
Code review changes refs #13329
- lines changed 331, context: html, text, full: html, text
Renaming file following code review suggestions #13251
- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
- lines changed 3, context: html, text, full: html, text
Adding link to new hub Quick Start Guide refs #6753
- src/hg/htdocs/goldenPath/help/hubQuickStart.html
- lines changed 331, context: html, text, full: html, text
Renaming file following code review suggestions #13251
- src/hg/htdocs/goldenPath/newsarch.html
- lines changed 41, context: html, text, full: html, text
adding announcement for new Roadmap hub, refs #13023
- lines changed 23, context: html, text, full: html, text
Adding announcement for EVS Variants track. Removed UCSC Gene and 3 assembly announcements. refs #9329
- src/hg/htdocs/indexNews.html
- lines changed 89, context: html, text, full: html, text
adding announcement for new Roadmap hub, refs #13023
- lines changed 149, context: html, text, full: html, text
Adding announcement for EVS Variants track. Removed UCSC Gene and 3 assembly announcements. refs #9329
- src/hg/inc/bed5Sources.h
- lines changed 82, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- lines changed 82, context: html, text, full: html, text
Removing unneeded file schema code. refs #13230
- src/hg/inc/hubConnect.h
- lines changed 1, context: html, text, full: html, text
some code clean-ups in response to code review
- lines changed 13, context: html, text, full: html, text
clean up some code for opening trackHubs, removed hgHubConnectCgiDestUrlcart variable, added ability to tell CGI's to default to a particular
database supported by a hub
- src/hg/inc/trackHub.h
- lines changed 1, context: html, text, full: html, text
clean up some code for opening trackHubs, removed hgHubConnectCgiDestUrlcart variable, added ability to tell CGI's to default to a particular
database supported by a hub
- src/hg/inc/wiggle.h
- src/hg/js/hgHubConnect.js
- lines changed 6, context: html, text, full: html, text
some small fixes for hub search ui
- src/hg/lib/bed.c
- lines changed 7, context: html, text, full: html, text
fixing another gp->bed converter used byhg/altSplice/altSplice/genePredToBed.c, but not by
hg/genePredToBed/genePredToBed.c
- lines changed 7, context: html, text, full: html, text
taking back two changes from earlier today to genePredToBed.c and bed.cafter I realized (and reminded by Braney) that the problem was entirely
different.
- src/hg/lib/bed5Sources.as
- lines changed 12, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- lines changed 3, context: html, text, full: html, text
Trim field name for hgc extraFields cosmetics
- src/hg/lib/bed5Sources.c
- lines changed 208, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- lines changed 208, context: html, text, full: html, text
Removing unneeded file schema code. refs #13230
- src/hg/lib/bed5Sources.sql
- lines changed 19, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- src/hg/lib/cart.c
- lines changed 1, context: html, text, full: html, text
some code clean-ups in response to code review
- lines changed 10, context: html, text, full: html, text
clean up some code for opening trackHubs, removed hgHubConnectCgiDestUrlcart variable, added ability to tell CGI's to default to a particular
database supported by a hub
- src/hg/lib/hubConnect.c
- lines changed 37, context: html, text, full: html, text
clean up some code for opening trackHubs, removed hgHubConnectCgiDestUrlcart variable, added ability to tell CGI's to default to a particular
database supported by a hub
- src/hg/lib/hui.c
- src/hg/lib/makefile
- lines changed 1, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- lines changed 1, context: html, text, full: html, text
Removing unneeded file schema code. refs #13230
- src/hg/lib/trackHub.c
- lines changed 40, context: html, text, full: html, text
clean up some code for opening trackHubs, removed hgHubConnectCgiDestUrlcart variable, added ability to tell CGI's to default to a particular
database supported by a hub
- src/hg/lib/wgEncodeAwgDnaseCombinedSources.as
- lines changed 6, context: html, text, full: html, text
Adding as file for source name table
- lines changed 3, context: html, text, full: html, text
Fix up schema for tableDescriptions
- src/hg/lib/wiggleCart.c
- src/hg/makeDb/doc/echTel2.txt
- lines changed 15, context: html, text, full: html, text
unmasked CpG island track contruction refs #1268
- src/hg/makeDb/doc/encodeAwgHg19.txt
- lines changed 31, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- src/hg/makeDb/doc/fr1.txt
- lines changed 27, context: html, text, full: html, text
unmasked CpG island track contruction refs #1268
- src/hg/makeDb/doc/galGal2.txt
- lines changed 28, context: html, text, full: html, text
unmasked CpG island track contruction refs #1268
- src/hg/makeDb/doc/hg16.txt
- lines changed 26, context: html, text, full: html, text
unmasked CpG island track contruction refs #1268
- src/hg/makeDb/doc/hg19.txt
- lines changed 6, context: html, text, full: html, text
Updated LRG tracks on hg19 and added to hg38. Also updated reference to NAR paper.refs #13359
- src/hg/makeDb/doc/hg38.txt
- lines changed 138, context: html, text, full: html, text
adding panTro4 and monDom5 lastz chain net refs #13300
- lines changed 30, context: html, text, full: html, text
adding panTro4 and monDom5 lastz chain net refs #13300
- lines changed 48, context: html, text, full: html, text
Updated LRG tracks on hg19 and added to hg38. Also updated reference to NAR paper.refs #13359
- lines changed 2, context: html, text, full: html, text
correct directory name for cytoBand refs #11681
- src/hg/makeDb/doc/mm10.txt
- lines changed 12, context: html, text, full: html, text
run up rheMac2 mm10 liftOver per user request refs #13319
- src/hg/makeDb/doc/mm9.txt
- lines changed 16, context: html, text, full: html, text
unmasked CpG island track contruction refs #1268
- src/hg/makeDb/doc/ochPri2.txt
- lines changed 8, context: html, text, full: html, text
lift over to ochPri3 refs #9347
- src/hg/makeDb/doc/panTro1.txt
- lines changed 27, context: html, text, full: html, text
unmasked CpG island track contruction refs #1268
- src/hg/makeDb/doc/rn3.txt
- lines changed 33, context: html, text, full: html, text
unmasked CpG island track contruction refs #1268
- src/hg/makeDb/doc/rn5.txt
- lines changed 3, context: html, text, full: html, text
Adding final bits to rn5 multiz13way. refs #8212
- src/hg/makeDb/hgBedSources/hgBedSources.c
- lines changed 138, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- src/hg/makeDb/hgBedSources/makefile
- lines changed 3, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- src/hg/makeDb/hgBedSources/test.in.bed
- lines changed 10, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- src/hg/makeDb/hgBedSources/test.out.bed
- lines changed 10, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- src/hg/makeDb/trackDb/apis/apiMel2/brhInparalog.html
- lines changed 1, context: html, text, full: html, text
updating UniRef50 link per code review, refs #13289
- src/hg/makeDb/trackDb/human/chainNetVertebrate.ra
- lines changed 17, context: html, text, full: html, text
adding in Arctic lamprey letCam1 refs #13300
- src/hg/makeDb/trackDb/human/hg19/wgEncodeAwg.ra
- lines changed 16, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- lines changed 5, context: html, text, full: html, text
Add settings to display ids as cell types with links. refs #13230
- lines changed 1, context: html, text, full: html, text
Label tweak for consistency.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgDnaseCombinedSites.html
- lines changed 60, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- lines changed 56, context: html, text, full: html, text
Refine track description. refs #13230
- src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgDnaseMaster.html
- lines changed 60, context: html, text, full: html, text
Draft track description using text from Chromatin landscapes paper. refs #13230
- src/hg/makeDb/trackDb/human/hg38/omimDescriptionText.html
- lines changed 52, context: html, text, full: html, text
Added comment for hg38 OMIM tracks that dbSNP is not available, which limits it a bit. These files (omimDescriptionText.html, omimGene2.html, omimLocation.html) to be removed from the hg38/ directory after dbSnp is added and confirmed to work with this track.
- src/hg/makeDb/trackDb/human/hg38/omimGene2.html
- lines changed 77, context: html, text, full: html, text
Added comment for hg38 OMIM tracks that dbSNP is not available, which limits it a bit. These files (omimDescriptionText.html, omimGene2.html, omimLocation.html) to be removed from the hg38/ directory after dbSnp is added and confirmed to work with this track.
- src/hg/makeDb/trackDb/human/hg38/omimLocation.html
- lines changed 71, context: html, text, full: html, text
Added comment for hg38 OMIM tracks that dbSNP is not available, which limits it a bit. These files (omimDescriptionText.html, omimGene2.html, omimLocation.html) to be removed from the hg38/ directory after dbSnp is added and confirmed to work with this track.
- src/hg/makeDb/trackDb/human/lrg.html
- lines changed 8, context: html, text, full: html, text
Updated LRG tracks on hg19 and added to hg38. Also updated reference to NAR paper.refs #13359
- src/hg/makeDb/trackDb/human/lrgTranscriptAli.html
- lines changed 8, context: html, text, full: html, text
Updated LRG tracks on hg19 and added to hg38. Also updated reference to NAR paper.refs #13359
- src/hg/makeDb/trackDb/human/trackDb.ra
- lines changed 2, context: html, text, full: html, text
Updated LRG tracks on hg19 and added to hg38. Also updated reference to NAR paper.refs #13359
- src/hg/makeDb/trackDb/rat/rn5/cons13way.html
- lines changed 4, context: html, text, full: html, text
More minor edits to description page to make it specific to the 13-way refs #8212
- src/hg/makeDb/trackDb/tagTypes.tab
- lines changed 1, context: html, text, full: html, text
DNase Combined track from ENCODE Analysis, with new data format (BED5Sources). Similar to factorSource, but more general and lighter-weight. refs #13230.
- lines changed 2, context: html, text, full: html, text
Add settings to display ids as cell types with links. refs #13230
- src/hg/makeDb/trackDb/trackDb.chainNet.afrotheria.ra
- lines changed 176, context: html, text, full: html, text
catching up chain net tracks refs #13300
- lines changed 118, context: html, text, full: html, text
catching up chain net track definitions refs #10272
- src/hg/makeDb/trackDb/trackDb.chainNet.birds.ra
- lines changed 530, context: html, text, full: html, text
catching up with chain net definitions refs #13300
- lines changed 126, context: html, text, full: html, text
catching up chain net tracks refs #13300
- src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra
- lines changed 353, context: html, text, full: html, text
catching up chain net tracks refs #13300
- src/hg/makeDb/trackDb/trackDb.chainNet.fish.ra
- lines changed 471, context: html, text, full: html, text
catching up chain net tracks refs #13300
- src/hg/makeDb/trackDb/trackDb.chainNet.laurasiatheria.ra
- lines changed 884, context: html, text, full: html, text
catching up chain net tracks refs #13300
- lines changed 59, context: html, text, full: html, text
adding chlSab1 - Green monkey - Chlorocebus sabaeus and phyCat1 - Sperm whale - Physeter catodon refs #13300
- lines changed 177, context: html, text, full: html, text
catching up chain net track definitions refs #10272
- lines changed 59, context: html, text, full: html, text
adding eriEur2 chain net refs #10272
- src/hg/makeDb/trackDb/trackDb.chainNet.mammal.ra
- lines changed 176, context: html, text, full: html, text
catching up chain net track definitions refs #10272
- src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra
- lines changed 176, context: html, text, full: html, text
catching up with chain net definitions refs #13300
- lines changed 59, context: html, text, full: html, text
catching up chain net tracks refs #13300
- lines changed 59, context: html, text, full: html, text
adding chlSab1 - Green monkey - Chlorocebus sabaeus and phyCat1 - Sperm whale - Physeter catodon refs #13300
- lines changed 59, context: html, text, full: html, text
catching up chain net track definitions refs #10272
- src/hg/makeDb/trackDb/trackDb.chainNet.sarcopterygii.ra
- lines changed 353, context: html, text, full: html, text
catching up chain net tracks refs #13300
- lines changed 118, context: html, text, full: html, text
catching up chain net track definitions refs #10272
- src/hg/makeDb/trackDb/trackDb.ra
- lines changed 9, context: html, text, full: html, text
catching up chain net tracks refs #13300
- lines changed 14, context: html, text, full: html, text
Removing stanza for cpgIslandExt track because it is now part of the cpgIslandSuper super track, refs #13268
- lines changed 3, context: html, text, full: html, text
Removing release tags for cpgIslandSuper track and subtracks, refs #13268
- lines changed 7, context: html, text, full: html, text
Trying out a new search rule for farm animal QTL track. refs #10954
- lines changed 1, context: html, text, full: html, text
catching up chain net track definitions refs #10272
- src/hg/makefile
- lines changed 1, context: html, text, full: html, text
Defining UNAME_S per Hiram's feedback, since it is not like I assume defined already.
- src/hg/oneShot/tryGtexBoxPlot/makefile
- lines changed 3, context: html, text, full: html, text
First cut at a GTEx fake plotter
- src/hg/oneShot/tryGtexBoxPlot/tryGtexBoxPlot.c
- lines changed 218, context: html, text, full: html, text
First cut at a GTEx fake plotter
- lines changed 122, context: html, text, full: html, text
It's doing a passible imitation of a Tukey box plot.
- lines changed 12, context: html, text, full: html, text
Making outliers dots only appear outside of whiskers.
- src/hg/pslToBed/pslToBed.c
- lines changed 2, context: html, text, full: html, text
changes after code review, refs #13332
- src/hg/utils/automation/doBlastzChainNet.pl
- lines changed 3, context: html, text, full: html, text
correctly md5sum the syntenic net downloads refs #13300
- src/hg/utils/automation/parseLrgXml.pl
- lines changed 31, context: html, text, full: html, text
Updated LRG tracks on hg19 and added to hg38. Also updated reference to NAR paper.refs #13359
- src/hg/utils/phyloTrees/130way.dissect.txt
- lines changed 1813, context: html, text, full: html, text
raising the bar to 130 species refs #10272
- src/hg/utils/phyloTrees/130wayChainNet.pl
- lines changed 212, context: html, text, full: html, text
raising the bar to 130 species refs #10272
- src/hg/utils/phyloTrees/131way.commonNames.nh
- lines changed 131, context: html, text, full: html, text
adding sperm whale refs #10272
- src/hg/utils/phyloTrees/131way.dissect.txt
- lines changed 1827, context: html, text, full: html, text
adding sperm whale refs #10272
- src/hg/utils/phyloTrees/131way.nh
- lines changed 131, context: html, text, full: html, text
adding sperm whale refs #10272
- src/hg/utils/phyloTrees/131way.scientificNames.nh
- lines changed 131, context: html, text, full: html, text
adding sperm whale refs #10272
- src/hg/utils/phyloTrees/131wayChainNet.pl
- lines changed 212, context: html, text, full: html, text
adding sperm whale refs #10272
- src/hg/utils/phyloTrees/commonNames.sh
- lines changed 1, context: html, text, full: html, text
adding sperm whale refs #10272
- src/hg/utils/phyloTrees/findScores.pl
- lines changed 1, context: html, text, full: html, text
correctly parsing new style Q matrix settings refs #13300
- src/hg/utils/phyloTrees/makefile
- lines changed 7, context: html, text, full: html, text
adding sperm whale refs #10272
- src/hg/utils/phyloTrees/scientificNames.sh
- lines changed 1, context: html, text, full: html, text
adding sperm whale refs #10272
- src/inc/fq.h
- src/lib/README
- lines changed 10, context: html, text, full: html, text
happened to stumble over this: patent notice not necessary anymore since2004.
- src/lib/annoStreamVcf.c
- lines changed 12, context: html, text, full: html, text
When position was set to a chrom not present in a VCF+tabix file,annoStreamVcf just kept reading rows out of the file instead of
paying attention to the return value of lineFileSetTabixRegion.
This inefficiency led to carefulMem running into its 6G limit.
Fix: if lineFileSetTabixRegion fails in asvSetRegion, set self->eof
to prevent reading out rows from the wrong position. If we're trying
to skip ahead to minChrom using lineFileSetTabixRegion in
nextRowUnfiltered, and it fails, just keep current position in case
the file has more chroms after minChrom.
fixes #13343
- src/lib/axt.c
- lines changed 3, context: html, text, full: html, text
Adding a few UC Regents Copyrights I missed in last round.
- src/lib/common.c
- lines changed 31, context: html, text, full: html, text
Polishing doubleBoxWhiskerCalc to work well for small Ns.
- src/lib/diGraph.c
- lines changed 4, context: html, text, full: html, text
Adding Jim Kent copyright notices to a few files that needed it.
- src/lib/filePath.c
- lines changed 1, context: html, text, full: html, text
Adding a few UC Regents Copyrights I missed in last round.
- src/lib/flydna.c
- lines changed 1, context: html, text, full: html, text
Adding spacing for readability around some copyrights notices that needed it.
- src/lib/fof.c
- lines changed 1, context: html, text, full: html, text
Adding spacing for readability around some copyrights notices that needed it.
- src/lib/fq.c
- src/lib/gff.c
- lines changed 1, context: html, text, full: html, text
Adding spacing for readability around some copyrights notices that needed it.
- src/lib/gfxPoly.c
- lines changed 1, context: html, text, full: html, text
Adding spacing for readability around some copyrights notices that needed it.
- src/lib/maf.c
- lines changed 1, context: html, text, full: html, text
Adding spacing for readability around some copyrights notices that needed it.
- src/lib/mafFromAxt.c
- lines changed 1, context: html, text, full: html, text
Adding spacing for readability around some copyrights notices that needed it.
- src/lib/makefile
- src/lib/mgCircle.c
- lines changed 3, context: html, text, full: html, text
Adding Jim Kent copyright notices to a few files that needed it.
- src/lib/mgPolygon.c
- lines changed 3, context: html, text, full: html, text
Adding Jim Kent copyright notices to a few files that needed it.
- src/lib/pipeline.c
- lines changed 1, context: html, text, full: html, text
Adding spacing for readability around some copyrights notices that needed it.
- src/lib/psGfx.c
- lines changed 1, context: html, text, full: html, text
Adding spacing for readability around some copyrights notices that needed it.
- src/lib/psPoly.c
- lines changed 1, context: html, text, full: html, text
Adding spacing for readability around some copyrights notices that needed it.
- src/lib/pslTbl.c
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Adding spacing for readability around some copyrights notices that needed it.
- src/lib/rainbow.c
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Adding Jim Kent copyright notices to a few files that needed it.
- src/lib/scoreWindow.c
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Adding spacing for readability around some copyrights notices that needed it.
- src/lib/seg.c
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Adding spacing for readability around some copyrights notices that needed it.
- src/lib/xAli.c
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Adding Jim Kent copyright notices to a few files that needed it.
- src/lib/xa.c
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Adding spacing for readability around some copyrights notices that needed it.
- src/lib/xenshow.c
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Adding spacing for readability around some copyrights notices that needed it.
- src/test/buildTableDescriptions.pl
- src/utils/qa/bamToBigWig.csh
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added 54844 to chromsizes file as suggested by Jonathan. Refs #13331
- src/utils/qa/weeklybld/buildEnv.csh
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v301 preview2 refs #13189
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- files changed: 171