All File Changes

v459_preview to v459_preview2 (2023-12-18 to 2024-01-02) v459

• src/hg/autoSql/tests/dbLinkTest.c
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    e5a054a02e7a80af675a99ba146c27465837f1d8 Thu Dec 21 10:13:23 2023 -0800
    more work on running tests in parallel
• src/hg/autoSql/tests/makefile
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    e1e77e597b9e2c2da74274b1544df2dd7b61ffd4 Wed Dec 20 22:58:08 2023 -0800
    allow test to run in parallel
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    e5a054a02e7a80af675a99ba146c27465837f1d8 Thu Dec 21 10:13:23 2023 -0800
    more work on running tests in parallel
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    ad288366c695a813ac9882b0279aeeeafbec4bf5 Fri Dec 22 09:23:21 2023 -0800
    fixed building some test.o files, do this in a very straight-foward way now
• src/hg/checkTableCoords/tests/makefile
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    bad1c2af619824bbeff311b8f0b97d3dc75f9260 Thu Dec 21 00:45:15 2023 -0800
    Work on being able to run tests in parallel. Due to timing, it might still have issues
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    e5a054a02e7a80af675a99ba146c27465837f1d8 Thu Dec 21 10:13:23 2023 -0800
    more work on running tests in parallel
• src/hg/hgTracks/hgTracks.c
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    33deddb49d40819644e5de797cbc217b89b9dc9d Mon Dec 18 14:46:37 2023 -0800
    make the chromInfo table header remain visible during scrolling, much more convenient. no redmine
• src/hg/hgc/bigBedClick.c
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    2c59596e02c2a8962d129271708e11e1778afb1a Tue Dec 19 08:34:32 2023 -0800
    Fix bug in bigBed extra field printing due to a typo where printing the field value got deleted, refs mailing list
• src/hg/htdocs/index.html
  • lines changed 62, context: html, text, full: html, text
    258a0a679ddb8d39698b72e63e0907b3a1baab35 Wed Dec 20 15:45:33 2023 -0800
    Add a search bar to the home page, refs #25146
• src/hg/js/utils.js
  • lines changed 84, context: html, text, full: html, text
    dcceb7569cea2c0e776a24e5892199a5e709855d Tue Dec 19 16:06:53 2023 -0800
    Fix a major tooltip bug, after the timeout ended for the mouse to stop moving, need to re-trigger the most recent mouseover event so a new tooltip can show up, refs #32697
• src/hg/lib/dosageSensitivityHaplo.as
  • lines changed 15, context: html, text, full: html, text
    efbc896ec61ccbd94910a56f5baae6d35f93cd19 Wed Dec 20 10:40:28 2023 -0800
    Staging QA Ready the dosage sensitivity track from Collins et al 2022 for hg38 and hg19. Refs #31991
• src/hg/lib/dosageSensitivityTriplo.as
  • lines changed 15, context: html, text, full: html, text
    efbc896ec61ccbd94910a56f5baae6d35f93cd19 Wed Dec 20 10:40:28 2023 -0800
    Staging QA Ready the dosage sensitivity track from Collins et al 2022 for hg38 and hg19. Refs #31991
• src/hg/lib/hui.c
  • lines changed 1, context: html, text, full: html, text
    dcceb7569cea2c0e776a24e5892199a5e709855d Tue Dec 19 16:06:53 2023 -0800
    Fix a major tooltip bug, after the timeout ended for the mouse to stop moving, need to re-trigger the most recent mouseover event so a new tooltip can show up, refs #32697
• src/hg/lib/tests/genePredTests.mk
  • lines changed 6, context: html, text, full: html, text
    bad1c2af619824bbeff311b8f0b97d3dc75f9260 Thu Dec 21 00:45:15 2023 -0800
    Work on being able to run tests in parallel. Due to timing, it might still have issues
  • lines changed 2, context: html, text, full: html, text
    e5a054a02e7a80af675a99ba146c27465837f1d8 Thu Dec 21 10:13:23 2023 -0800
    more work on running tests in parallel
• src/hg/lib/tests/makefile
  • lines changed 12, context: html, text, full: html, text
    bad1c2af619824bbeff311b8f0b97d3dc75f9260 Thu Dec 21 00:45:15 2023 -0800
    Work on being able to run tests in parallel. Due to timing, it might still have issues
  • lines changed 38, context: html, text, full: html, text
    d0bc398ba9b871c065198b157fe5efd809c051ce Thu Dec 21 01:14:33 2023 -0800
    fixed some dependency breakage on running tests in parallel from a clean tree
• src/hg/lib/tests/pslReaderTests.mk
  • lines changed 1, context: html, text, full: html, text
    bad1c2af619824bbeff311b8f0b97d3dc75f9260 Thu Dec 21 00:45:15 2023 -0800
    Work on being able to run tests in parallel. Due to timing, it might still have issues
  • lines changed 2, context: html, text, full: html, text
    e5a054a02e7a80af675a99ba146c27465837f1d8 Thu Dec 21 10:13:23 2023 -0800
    more work on running tests in parallel
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 2, context: html, text, full: html, text
    aaf71829f6044d4d4fc9d3e9276326878ad16ef0 Mon Dec 18 12:27:44 2023 -0800
    adding two per user request GCA_002220415.3_Triticum_4.0 bread wheat and GCA_027939395.1_ASM2793939v1 human gammaherpesvirus 8 refs #29545
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    53671a3d9ee162968ba83068a7771f0216b6a640 Wed Dec 20 15:17:54 2023 -0800
    adding one of the new assemblies for house mouse
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    4c928d18e8664613560f90cc593a76127edf40de Fri Dec 22 13:31:58 2023 -0800
    update to bring in new mouse strain assemblies refs #29545
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    24f9b3dcfeb38241531404d1ae549c58848ed0f1 Fri Dec 22 14:42:03 2023 -0800
    add Ehrlichia chaffeensis str. (Arkansas 2006) bacteria per user request refs #29545
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    46776f7940c88ca220483c69dd6a9389c6f529e4 Tue Dec 26 10:53:18 2023 -0800
    update to bring in the two new HG002 assemblies GCA_018852605.2_ASM1885260v2 and GCA_018852615.2_ASM1885261v2 refs #29545
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    035d05236c501fde6032a288aba49bbc1423614a Wed Dec 27 17:12:22 2023 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/asmHubs/mkAsmStats.pl
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    6941f6952496d6520dcba4bdb4e1898bb9190325 Wed Dec 20 09:02:31 2023 -0800
    the style border 1px loses the border lines between the columns no redemine
• src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
  • lines changed 1, context: html, text, full: html, text
    6941f6952496d6520dcba4bdb4e1898bb9190325 Wed Dec 20 09:02:31 2023 -0800
    the style border 1px loses the border lines between the columns no redemine
• src/hg/makeDb/doc/asmHubs/trackData.pl
  • lines changed 1, context: html, text, full: html, text
    6941f6952496d6520dcba4bdb4e1898bb9190325 Wed Dec 20 09:02:31 2023 -0800
    the style border 1px loses the border lines between the columns no redemine
• src/hg/makeDb/doc/bacteriaAsmHub/bacteria.orderList.tsv
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    24f9b3dcfeb38241531404d1ae549c58848ed0f1 Fri Dec 22 14:42:03 2023 -0800
    add Ehrlichia chaffeensis str. (Arkansas 2006) bacteria per user request refs #29545
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
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    4c928d18e8664613560f90cc593a76127edf40de Fri Dec 22 13:31:58 2023 -0800
    update to bring in new mouse strain assemblies refs #29545
• src/hg/makeDb/doc/dosageSensitivityCollins.txt
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    efbc896ec61ccbd94910a56f5baae6d35f93cd19 Wed Dec 20 10:40:28 2023 -0800
    Staging QA Ready the dosage sensitivity track from Collins et al 2022 for hg38 and hg19. Refs #31991
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 1, context: html, text, full: html, text
    035d05236c501fde6032a288aba49bbc1423614a Wed Dec 27 17:12:22 2023 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
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    035d05236c501fde6032a288aba49bbc1423614a Wed Dec 27 17:12:22 2023 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.clade.txt
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    4c928d18e8664613560f90cc593a76127edf40de Fri Dec 22 13:31:58 2023 -0800
    update to bring in new mouse strain assemblies refs #29545
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    46776f7940c88ca220483c69dd6a9389c6f529e4 Tue Dec 26 10:53:18 2023 -0800
    update to bring in the two new HG002 assemblies GCA_018852605.2_ASM1885260v2 and GCA_018852615.2_ASM1885261v2 refs #29545
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    dd3c511964c88b9d5873890c7b661d6af8d52044 Tue Dec 26 12:09:21 2023 -0800
    correct clade for GCA_018852605.1_HG002.alt.pat.f1_v2 refs #29545
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    035d05236c501fde6032a288aba49bbc1423614a Wed Dec 27 17:12:22 2023 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
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    4c928d18e8664613560f90cc593a76127edf40de Fri Dec 22 13:31:58 2023 -0800
    update to bring in new mouse strain assemblies refs #29545
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    46776f7940c88ca220483c69dd6a9389c6f529e4 Tue Dec 26 10:53:18 2023 -0800
    update to bring in the two new HG002 assemblies GCA_018852605.2_ASM1885260v2 and GCA_018852615.2_ASM1885261v2 refs #29545
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    035d05236c501fde6032a288aba49bbc1423614a Wed Dec 27 17:12:22 2023 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/macFas5/lastzRuns.txt
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    116b53aa88a02bcecec4ce0362a8277eec749073 Wed Dec 20 23:06:53 2023 -0800
    panTro6 vs. macFas5, lastz/chain/net run for user, refs #32760
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
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    53671a3d9ee162968ba83068a7771f0216b6a640 Wed Dec 20 15:17:54 2023 -0800
    adding one of the new assemblies for house mouse
  • lines changed 19, context: html, text, full: html, text
    4c928d18e8664613560f90cc593a76127edf40de Fri Dec 22 13:31:58 2023 -0800
    update to bring in new mouse strain assemblies refs #29545
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    bb1cac0fc3afcb9446ca0b6b877e8856c748648c Fri Dec 22 14:05:34 2023 -0800
    GCA_001624675.1_NOD_ShiLtJ_v1 has moved to legacy refs #29545
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    035d05236c501fde6032a288aba49bbc1423614a Wed Dec 27 17:12:22 2023 -0800
    VGP update refs #29545
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    962ed173ca9633aa00aeb8b19a6a8f3d51397b76 Wed Dec 27 18:34:29 2023 -0800
    move GCA_004365275.1_TupTan_v1_BIUU to legacy refs #29545
• src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
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    aaf71829f6044d4d4fc9d3e9276326878ad16ef0 Mon Dec 18 12:27:44 2023 -0800
    adding two per user request GCA_002220415.3_Triticum_4.0 bread wheat and GCA_027939395.1_ASM2793939v1 human gammaherpesvirus 8 refs #29545
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 4, context: html, text, full: html, text
    46776f7940c88ca220483c69dd6a9389c6f529e4 Tue Dec 26 10:53:18 2023 -0800
    update to bring in the two new HG002 assemblies GCA_018852605.2_ASM1885260v2 and GCA_018852615.2_ASM1885261v2 refs #29545
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
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    4c928d18e8664613560f90cc593a76127edf40de Fri Dec 22 13:31:58 2023 -0800
    update to bring in new mouse strain assemblies refs #29545
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    035d05236c501fde6032a288aba49bbc1423614a Wed Dec 27 17:12:22 2023 -0800
    VGP update refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.alternate.orderList.tsv
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    2b8abc091c74e7db658b36d307fc822e7cf0037d Thu Dec 28 10:11:44 2023 -0800
    bring the VGP alternates up to date refs #29545
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    40e734def00da5af71758c6fca89faf781ca8cca Thu Dec 28 11:41:22 2023 -0800
    reset alternates to primaries and primaries to alternates per Erich's list refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.legacy.orderList.tsv
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    cc4c6b10e07399a96a261bd5912e1a96bf432011 Wed Dec 27 09:48:37 2023 -0800
    update VGP listings refs #29545
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    968cb710e3fb2ba7e3697161aae71112666f063c Wed Dec 27 18:18:17 2023 -0800
    VGP update before primary alternate rearragement refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.primary.orderList.tsv
  • lines changed 4, context: html, text, full: html, text
    cc4c6b10e07399a96a261bd5912e1a96bf432011 Wed Dec 27 09:48:37 2023 -0800
    update VGP listings refs #29545
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    968cb710e3fb2ba7e3697161aae71112666f063c Wed Dec 27 18:18:17 2023 -0800
    VGP update before primary alternate rearragement refs #29545
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    75ec54ad980f7e19a154aa28252485f5b28ac8c2 Wed Dec 27 19:40:17 2023 -0800
    adding 41 VGP assemblies refs #29545
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    40e734def00da5af71758c6fca89faf781ca8cca Thu Dec 28 11:41:22 2023 -0800
    reset alternates to primaries and primaries to alternates per Erich's list refs #29545
• src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt
  • lines changed 4, context: html, text, full: html, text
    cc4c6b10e07399a96a261bd5912e1a96bf432011 Wed Dec 27 09:48:37 2023 -0800
    update VGP listings refs #29545
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    968cb710e3fb2ba7e3697161aae71112666f063c Wed Dec 27 18:18:17 2023 -0800
    VGP update before primary alternate rearragement refs #29545
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    75ec54ad980f7e19a154aa28252485f5b28ac8c2 Wed Dec 27 19:40:17 2023 -0800
    adding 41 VGP assemblies refs #29545
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    2b8abc091c74e7db658b36d307fc822e7cf0037d Thu Dec 28 10:11:44 2023 -0800
    bring the VGP alternates up to date refs #29545
• src/hg/makeDb/doc/viralAsmHub/viral.orderList.tsv
  • lines changed 14, context: html, text, full: html, text
    aaf71829f6044d4d4fc9d3e9276326878ad16ef0 Mon Dec 18 12:27:44 2023 -0800
    adding two per user request GCA_002220415.3_Triticum_4.0 bread wheat and GCA_027939395.1_ASM2793939v1 human gammaherpesvirus 8 refs #29545
• src/hg/makeDb/scripts/buildDosageSensitivityCollins.py
  • lines changed 270, context: html, text, full: html, text
    efbc896ec61ccbd94910a56f5baae6d35f93cd19 Wed Dec 20 10:40:28 2023 -0800
    Staging QA Ready the dosage sensitivity track from Collins et al 2022 for hg38 and hg19. Refs #31991
• src/hg/makeDb/trackDb/human/dosageSensitivityCollins2022.html
  • lines changed 139, context: html, text, full: html, text
    efbc896ec61ccbd94910a56f5baae6d35f93cd19 Wed Dec 20 10:40:28 2023 -0800
    Staging QA Ready the dosage sensitivity track from Collins et al 2022 for hg38 and hg19. Refs #31991
• src/hg/makeDb/trackDb/human/dosageSensitivityCollins2022.ra
  • lines changed 43, context: html, text, full: html, text
    efbc896ec61ccbd94910a56f5baae6d35f93cd19 Wed Dec 20 10:40:28 2023 -0800
    Staging QA Ready the dosage sensitivity track from Collins et al 2022 for hg38 and hg19. Refs #31991
• src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
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    3f054b1a42d8327e5d69c20c630ffad3b08bfbdb Wed Dec 20 13:16:38 2023 -0800
    Adding version numbers to the gnomAD constraint tracks as requested by Anna via email (cc'd Chris too). This is in anticipation of the v4 addition to the RTS sessions.
• src/hg/makeDb/trackDb/human/hg38/gnomad.ra
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    3f054b1a42d8327e5d69c20c630ffad3b08bfbdb Wed Dec 20 13:16:38 2023 -0800
    Adding version numbers to the gnomAD constraint tracks as requested by Anna via email (cc'd Chris too). This is in anticipation of the v4 addition to the RTS sessions.
• src/hg/makeDb/trackDb/human/hg38/hprcArr.ra
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    89e8fdcc751e4dcbade0df175c3a68f9a7427c31 Thu Dec 28 15:15:45 2023 -0800
    Fixing up desc page grammar and flow, and changing genome to assembly in track label for consistency, refs #32287
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    5ffdfa5d74fb31071940fc4284efa87d4e951b5d Thu Dec 28 15:24:24 2023 -0800
    Another small tweak to the labels, refs #32287
• src/hg/makeDb/trackDb/human/hg38/hprcArrV1.html
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    89e8fdcc751e4dcbade0df175c3a68f9a7427c31 Thu Dec 28 15:15:45 2023 -0800
    Fixing up desc page grammar and flow, and changing genome to assembly in track label for consistency, refs #32287
• src/hg/makeDb/trackDb/human/hg38/hprcChainNet.ra
  • lines changed 1, context: html, text, full: html, text
    2aa9aef96f234227b5020ff71ef3d8aad27f4fdb Thu Dec 21 11:54:30 2023 -0800
    rearrange 90-way sGroups into subPopulations and correct spelling of Vietnam refs #32285
• src/hg/makeDb/trackDb/human/hg38/trackDb.hprc90way.ra
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    2aa9aef96f234227b5020ff71ef3d8aad27f4fdb Thu Dec 21 11:54:30 2023 -0800
    rearrange 90-way sGroups into subPopulations and correct spelling of Vietnam refs #32285
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    04386d851146a423a65dfde5fb2c141bf48e08f0 Thu Dec 21 14:22:16 2023 -0800
    there is no phyloP track for this alignment refs #32285
• src/hg/makeDb/trackDb/human/jaspar.html
  • lines changed 27, context: html, text, full: html, text
    1e4bcfc964c6f75363370455b93822c6dd586524 Mon Dec 18 11:46:16 2023 -0800
    Updating JASPAR description page for 2024 track release, refs #31973
• src/hg/makeDb/trackDb/human/trackDb.ra
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    efbc896ec61ccbd94910a56f5baae6d35f93cd19 Wed Dec 20 10:40:28 2023 -0800
    Staging QA Ready the dosage sensitivity track from Collins et al 2022 for hg38 and hg19. Refs #31991
• src/hg/makeDb/trackDb/tagTypes.tab
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    bfe25cef4aaec5d42f2c4ce71897b70011e0ea42 Thu Dec 21 12:01:22 2023 -0800
    adding new sGroup_ definitions for HPRC 90-way groups refs #32285
• src/hg/makefile
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    bad1c2af619824bbeff311b8f0b97d3dc75f9260 Thu Dec 21 00:45:15 2023 -0800
    Work on being able to run tests in parallel. Due to timing, it might still have issues
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    e5a054a02e7a80af675a99ba146c27465837f1d8 Thu Dec 21 10:13:23 2023 -0800
    more work on running tests in parallel
• src/hg/mouseStuff/mafRanges/tests/makefile
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    bad1c2af619824bbeff311b8f0b97d3dc75f9260 Thu Dec 21 00:45:15 2023 -0800
    Work on being able to run tests in parallel. Due to timing, it might still have issues
• src/hg/utils/automation/asmHubTrackDb.sh
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    9b374bee5ec4240f3e95f1cf6167230682fa5940 Fri Dec 22 21:34:59 2023 -0800
    accomodate previous versions of ensGene track no redmine
• src/hg/utils/hubCheck/makefile
  • lines changed 7, context: html, text, full: html, text
    436b3823058d69b5f9437933718f7b461d37e7e2 Wed Dec 27 11:25:59 2023 -0800
    needs an install rule refs #32821
• src/hg/utils/otto/clinvar/clinVarToBed
  • lines changed 22, context: html, text, full: html, text
    4ae81a7984cf1609801f0e4e96d3c9be009ab7e5 Thu Dec 21 03:48:55 2023 -0800
    trying to make clinvar otto job work again
• src/hg/utils/otto/sarscov2phylo/branchSpecificMask.yml
  • lines changed 6, context: html, text, full: html, text
    8206caf3deee5603597c6fdbcae1320afc37281a Sat Dec 23 18:25:37 2023 -0800
    Additional sites/ranges for BA.2.86 and XBC.
• src/hg/utils/otto/sarscov2phylo/combineMetadata.sh
  • lines changed 2, context: html, text, full: html, text
    e14703c19576048494ee2ea07fe0e10efa67cb79 Sat Dec 23 18:29:55 2023 -0800
    Use different column for more complete Nextstrain clade labels.
• src/hg/utils/otto/sarscov2phylo/gbMetadataAddBioSample.pl
  • lines changed 7, context: html, text, full: html, text
    d4caa9d01a63434e9859ed47971217ff9a20edb9 Sat Dec 23 19:14:20 2023 -0800
    Add country and year to isolate names that don't have them, analogous to fixNcbiFastaNames.pl.
• src/hg/utils/otto/sarscov2phylo/getCncb.sh
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    ac8238545ef1708bfafa03e6b9c7daa0352b1b76 Sat Dec 23 19:18:09 2023 -0800
    faUniqify to avoid duplicates in fasta. Use different column for more complete Nextstrain clade labels.
• src/hg/utils/otto/sarscov2phylo/getNcbi.sh
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    a4d0ac69ad1b6dd12a46266be6d95249c405d208 Sat Dec 23 19:18:43 2023 -0800
    Remove manual patch for BioSample since records have been fixed by ENA.
• src/hg/utils/otto/sarscov2phylo/includeRecombinants.tsv
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    b59b26071d63fe5cab8d3c1fc5e7892315015bd9 Sat Dec 23 19:14:50 2023 -0800
    Adding more IDs by request
• src/hg/utils/otto/sarscov2phylo/makeNewMaskedVcf.sh
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    47541d92430fc9e07cd0bab4ba386faaa1f3d76c Sat Dec 23 18:27:34 2023 -0800
    Remove duplicates between COG-UK and INSDC. Fix name format that omitted INSDC accession. Get INSDC accessions for COG-UK sequences in lineageProposalsRecombinants file.
• src/hg/utils/otto/sarscov2phylo/nextstrain.clade-mutations.tsv
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    69af6ad3c35e8e4e3c11cb8290d95a394908f407 Sat Dec 23 19:16:12 2023 -0800
    Add 23G, 23H, 23I. Update labels for older clades to match current nextstrain.org labels.
• src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv
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    2db23a88d1e63eb50feb97accd5ca6624021ac18 Sat Dec 23 18:24:37 2023 -0800
    Lots of new lineages and a few path updates.
• src/hg/utils/otto/sarscov2phylo/updateCombinedTree.sh
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    c6d93a375ba89f43a73c00a93dd329c3f6a3d4d2 Sat Dec 23 19:19:35 2023 -0800
    Increase --max-path-length so we don't lose recent sequences with many legit mutations.
• src/hg/utils/vcfToHgvs/tests/makefile
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    bad1c2af619824bbeff311b8f0b97d3dc75f9260 Thu Dec 21 00:45:15 2023 -0800
    Work on being able to run tests in parallel. Due to timing, it might still have issues
• src/inc/common.mk
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    d0bc398ba9b871c065198b157fe5efd809c051ce Thu Dec 21 01:14:33 2023 -0800
    fixed some dependency breakage on running tests in parallel from a clean tree
• src/inc/psl.h
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    c319f541bd3c9d4930907b1a8fc09a1b342efe95 Fri Dec 22 12:50:23 2023 -0800
    rename poorly name function
• src/lib/psl.c
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    c319f541bd3c9d4930907b1a8fc09a1b342efe95 Fri Dec 22 12:50:23 2023 -0800
    rename poorly name function
• src/lib/pslTransMap.c
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    c319f541bd3c9d4930907b1a8fc09a1b342efe95 Fri Dec 22 12:50:23 2023 -0800
    rename poorly name function
• src/product/ex.hg.conf
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    7c46eab1d6d202ce07bd28fef32d1d8fde44652c Fri Dec 15 02:54:20 2023 -0800
    docing parallelFetch default of 20, thanks to @markd, no redmine
• src/product/installer/browserSetup.sh
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    d8e0a7a29e2c36d59383cce1ddfd91bc66f25ce9 Sat Dec 30 07:44:27 2023 -0800
    removing stray help text at end of browserSetup.sh script, email from Dwayne McCully, refs #32693
• src/utils/bedToBigBed/tests/makefile
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    bad1c2af619824bbeff311b8f0b97d3dc75f9260 Thu Dec 21 00:45:15 2023 -0800
    Work on being able to run tests in parallel. Due to timing, it might still have issues
• src/utils/qa/weeklybld/buildEnv.csh
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    ebd0143b8efc0aee44947086f3327a82246dd801 Tue Jan 2 10:20:59 2024 -0800
    v459 preview2, refs #32805
• src/utils/wigToBigWig/tests/makefile
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    bad1c2af619824bbeff311b8f0b97d3dc75f9260 Thu Dec 21 00:45:15 2023 -0800
    Work on being able to run tests in parallel. Due to timing, it might still have issues
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    e5a054a02e7a80af675a99ba146c27465837f1d8 Thu Dec 21 10:13:23 2023 -0800
    more work on running tests in parallel

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