Commits for galt

v370_preview2 to v370_base (2018-08-13 to 2018-08-20) v370

a4c0a9f4b48c074daec96559640b76ab2d9db488 Mon Aug 13 16:03:28 2018 -0700

• experiment finished.
  • src/inc/common.mk.galt - lines changed 428, context: html, text, full: html, text

bcbc5e6ebd4cf680201145e774b6e2e2dd7d192f Mon Aug 13 23:38:17 2018 -0700

• fix .cse.ucsc.edu url in hgVisigine README
  • src/hg/visiGene/hgVisiGene/README - lines changed 1, context: html, text, full: html, text

3ffc9f5979986da9c3b6d4094959890bab59fa9e Tue Aug 14 12:37:12 2018 -0700

• fixing unmatched html tags in hgBlat
  • src/hg/hgBlat/hgBlat.c - lines changed 6, context: html, text, full: html, text

110f5e12a634db49ea9aa1ea23ff4965f1c2befe Tue Aug 14 13:48:57 2018 -0700

• changing cse to soe in domains, sometimes gi. ref #21876
  • src/hg/altSplice/affySplice/altHtmlPages.c - lines changed 5, context: html, text, full: html, text
  • src/hg/altSplice/affySplice/altProbes.c - lines changed 2, context: html, text, full: html, text
  • src/hg/altSplice/altSplice/altAnalysis.c - lines changed 2, context: html, text, full: html, text
  • src/hg/altSplice/altSplice/altPaths.c - lines changed 1, context: html, text, full: html, text
  • src/hg/altSplice/altSplice/altSummary.c - lines changed 2, context: html, text, full: html, text
  • src/hg/altSplice/altSplice/correlateWithExpression.c - lines changed 2, context: html, text, full: html, text
  • src/hg/altSplice/altSplice/spliceStats.c - lines changed 1, context: html, text, full: html, text
  • src/hg/bedItemOverlapCount/bedItemOverlapCount.c - lines changed 1, context: html, text, full: html, text
  • src/hg/das/das.c - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/docId/docIdView/docIdView.c - lines changed 2, context: html, text, full: html, text
  • src/hg/encode3/eap/eapFreen/eapFreen.c - lines changed 2, context: html, text, full: html, text
  • src/hg/encode3/encodeDataWarehouse/oneShot/rsyncEdwExpDataType/rsyncEdwExpDataType.c - lines changed 1, context: html, text, full: html, text
  • src/hg/encode3/validateFiles/validateFiles.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgGtexApi/hgGtexApi.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgLiftOver/hgLiftOver.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTables/mainPage.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTablesTest/hgTablesTest.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/gbrowseTest.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 8, context: html, text, full: html, text
  • src/hg/hgc/lowelab.c - lines changed 3, context: html, text, full: html, text
  • src/hg/js/hgTracks.js - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/fileUi.c - lines changed 6, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/wigAsciiToBinary.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/wigDataStream.c - lines changed 1, context: html, text, full: html, text
  • src/hg/logCrawl/hgAccessCrawl/hgAccessCrawl.c - lines changed 1, context: html, text, full: html, text
  • src/hg/orthoMap/orthoPickIntron.c - lines changed 3, context: html, text, full: html, text
  • src/hg/qaPushQ/README - lines changed 1, context: html, text, full: html, text
  • src/hg/qaPushQ/qaPushQ.c - lines changed 8, context: html, text, full: html, text
  • src/hg/sageVisCGI/sageVisCGI.c - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/README.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/gatewayPage.js - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/gatewayPage.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/hubIndexNcbi.sh - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/ncbiPartitionedHubIndexNcbi.sh - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/genbank/rmskDescription.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/bedExtendRanges/bedExtendRanges.c - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/hubCheck/hubCheck.c - lines changed 1, context: html, text, full: html, text
  • src/hg/visiGene/vgLoadAllen/vgLoadAllen.c - lines changed 2, context: html, text, full: html, text
  • src/hg/visiGene/vgLoadJax/vgLoadJax.c - lines changed 2, context: html, text, full: html, text
  • src/jkOwnLib/gfInternal.c - lines changed 1, context: html, text, full: html, text
  • src/lib/htmshell.c - lines changed 1, context: html, text, full: html, text
  • src/lib/tests/htmlMimeTest.c - lines changed 2, context: html, text, full: html, text
  • src/lib/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/lib/tests/udcTest.c - lines changed 1, context: html, text, full: html, text
  • src/tracks/tracks.c - lines changed 1, context: html, text, full: html, text
  • src/utils/bedClip/bedClip.c - lines changed 1, context: html, text, full: html, text
  • src/utils/bedGraphToBigWig/bedGraphToBigWig.c - lines changed 1, context: html, text, full: html, text
  • src/utils/bedToBigBed/bedToBigBed.c - lines changed 1, context: html, text, full: html, text
  • src/utils/git-reports/git-reports.c - lines changed 2, context: html, text, full: html, text
  • src/utils/wigToBigWig/wigToBigWig.c - lines changed 1, context: html, text, full: html, text

3f2e6792566fd91a20c9c892e3c29ca487c1616c Tue Aug 14 13:56:52 2018 -0700

• last minute lowelab fix. cse domain is going away.
  • src/hg/hgc/lowelab.c - lines changed 3, context: html, text, full: html, text