All File Changes
v411_preview to v411_preview2 (2021-02-15 to 2021-02-22) v411
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- confs/asia.hg.conf
- lines changed 3, context: html, text, full: html, text
16d6e0a2fea18901bb7b16c98206660f8d05746c Sun Feb 21 01:11:36 2021 -0800
Installing updated hg.conf files from UCSC servers
- confs/euro.hg.conf
- lines changed 3, context: html, text, full: html, text
16d6e0a2fea18901bb7b16c98206660f8d05746c Sun Feb 21 01:11:36 2021 -0800
Installing updated hg.conf files from UCSC servers
- confs/hgwbeta.hg.conf
- lines changed 1, context: html, text, full: html, text
16d6e0a2fea18901bb7b16c98206660f8d05746c Sun Feb 21 01:11:36 2021 -0800
Installing updated hg.conf files from UCSC servers
- confs/rr.hg.conf
- lines changed 3, context: html, text, full: html, text
16d6e0a2fea18901bb7b16c98206660f8d05746c Sun Feb 21 01:11:36 2021 -0800
Installing updated hg.conf files from UCSC servers
- src/hg/hgBlat/hgBlat.c
- lines changed 16, context: html, text, full: html, text
b475ddc8795329be93a783760d7aed704131d479 Wed Feb 17 01:48:32 2021 -0800
adding JSON output to hgBlat, refs #27010
- lines changed 1, context: html, text, full: html, text
38791fcc8e27d95bf1ecde01035aae26027f956b Thu Feb 18 05:05:17 2021 -0800
making hgBlat json format look more like our API, refs #27010
- src/hg/hgCustom/hgCustom.c
- lines changed 1, context: html, text, full: html, text
ed0a4fb628c062aebe5dc947f12bdac44525f79d Fri Feb 19 11:10:45 2021 -0800
add bigLolly to the types allowed in hgCustom
- src/hg/hgMirror/hgMirror
- lines changed 3, context: html, text, full: html, text
623747f9b8345a8cd6470fa2adf14050a2bd7bd0 Thu Feb 18 06:22:07 2021 -0800
adding knownCds to allways-add table list in hgMirror on gbib, refs #26781
- src/hg/hgTracks/simpleTracks.c
- lines changed 1, context: html, text, full: html, text
4984c39fe5baf37170f2b2fe9f6d443b6cb9ba74 Wed Feb 17 12:28:36 2021 -0800
Expanding buffer to better accommodate long item names, refs #27013
- src/hg/hgTracks/wigTrack.c
- lines changed 2, context: html, text, full: html, text
9a3fd6babace479e2ccd5eb2b8a9a00e0d378bea Wed Feb 17 08:53:08 2021 -0800
do not honor the negate option refs #26505
- src/hg/htdocs/FAQ/FAQformat.html
- lines changed 1, context: html, text, full: html, text
798cd70f5fd698e30a7bd0b6317f717a9e9eed7c Fri Feb 19 11:39:09 2021 -0800
Adding bigLolly page link to the formats FAQ page, refs #26481
- lines changed 1, context: html, text, full: html, text
ac72218dd4c49344fabc2d1af7ff5c7a57f4d1dc Fri Feb 19 12:01:14 2021 -0800
Removing bigLolly format line since one already exists, refs #26481
- src/hg/htdocs/FAQ/FAQreleases.html
- lines changed 1, context: html, text, full: html, text
059078006c994f45ba2fe5d5e588181aec9074c6 Thu Feb 18 14:21:05 2021 -0800
Announcing the marmoset (calJac4) assembly, refs #24074
- src/hg/htdocs/goldenPath/credits.html
- lines changed 4, context: html, text, full: html, text
56dc9746c61cf5cfa2432adf38c1c6b1a7ebaf44 Thu Feb 18 09:44:12 2021 -0800
Adding credits for the mm39 assembly, refs #22271
- lines changed 30, context: html, text, full: html, text
059078006c994f45ba2fe5d5e588181aec9074c6 Thu Feb 18 14:21:05 2021 -0800
Announcing the marmoset (calJac4) assembly, refs #24074
- src/hg/htdocs/goldenPath/help/bigMaf.html
- lines changed 10, context: html, text, full: html, text
b6b83e88048180ae13593ec462986145bb27a12b Wed Feb 17 10:16:04 2021 -0800
Adding some simple wget commands to make example process eaiser in bigMaf refs #27009
- lines changed 3, context: html, text, full: html, text
4d62fae590223b48c28c0212f3422176cd80e2f7 Wed Feb 17 10:22:44 2021 -0800
Adding a note about the input referenceDb that came up in bigMaf MLQ refs #27009
- lines changed 1, context: html, text, full: html, text
c14f12b1a0e0b239f22561f8b9eccdd668e39c94 Wed Feb 17 10:30:23 2021 -0800
Removing extra </a></code> tags found by htmlCheck validate on the bigMaf help page.
- src/hg/htdocs/goldenPath/help/gbib.html
- lines changed 1, context: html, text, full: html, text
8e06fcb5cab1edac0c557288c4b68b0df4b0f04c Thu Feb 18 16:00:56 2021 -0800
improved wording
- lines changed 2, context: html, text, full: html, text
80fea8ced35411463d415e35ce77cff8db313d46 Fri Feb 19 16:28:41 2021 -0800
Refs #26938
- lines changed 2, context: html, text, full: html, text
6f117a37587e94ac69d3ce59801e3f3d7ff0ed10 Fri Feb 19 18:20:07 2021 -0800
Feedback from CR refs #26998
- src/hg/htdocs/goldenPath/help/wiggle.html
- lines changed 35, context: html, text, full: html, text
d8f77b46c9ef3bbb0c62927eb86fe8aa3b1d494b Thu Feb 18 06:31:01 2021 -0800
making some changes to the wiggle docs page, OKed by Hiram, no redmine yet
- src/hg/htdocs/goldenPath/newsarch.html
- lines changed 54, context: html, text, full: html, text
059078006c994f45ba2fe5d5e588181aec9074c6 Thu Feb 18 14:21:05 2021 -0800
Announcing the marmoset (calJac4) assembly, refs #24074
- src/hg/htdocs/goldenPath/pubs.html
- lines changed 31, context: html, text, full: html, text
0d02d453c1238599d373efd2052587feec62bc33 Fri Feb 19 11:10:26 2021 -0800
Rearranging pubs to alphabetical order and adding PMCIDs working towards Progress Report pubs.
- lines changed 10, context: html, text, full: html, text
1bc4ef4063cde5f6f9531cc2cb92ae763a5f3c11 Fri Feb 19 11:58:55 2021 -0800
Adding another publication to pubs.html
- lines changed 1, context: html, text, full: html, text
fbdfb0b81479891517e409c8fd0267f02da605df Fri Feb 19 15:57:26 2021 -0800
Removing staged VGP paper comment since was never published in a journal
- src/hg/htdocs/indexNews.html
- lines changed 11, context: html, text, full: html, text
059078006c994f45ba2fe5d5e588181aec9074c6 Thu Feb 18 14:21:05 2021 -0800
Announcing the marmoset (calJac4) assembly, refs #24074
- src/hg/hubApi/hubApi.c
- lines changed 1, context: html, text, full: html, text
d24381c71e614155499dbe25f3f14d259bd6f131 Wed Feb 17 17:08:57 2021 -0800
fix typo error no redmine
- src/hg/inc/hgFind.h
- lines changed 1, context: html, text, full: html, text
a27219ced37a549f3b69bc79f07ea99a87439ecd Sat Feb 20 12:49:06 2021 -0800
Give user a chance to get non-short circuit hits if there's more than
one short circuit choice (otherwise just go to position). Add ability
to add trixSearch path to findSpecs. Add new find spec for hg38
gencodeV36 that only has canonical genes in it.
- src/hg/js/ddcl.js
- lines changed 114, context: html, text, full: html, text
edbd78ba2667d41249ee0c521d49304c038ffeb1 Fri Feb 19 17:27:19 2021 -0800
Added counts to hgTrackUi facets. refs #25321
- src/hg/js/hui.js
- lines changed 122, context: html, text, full: html, text
edbd78ba2667d41249ee0c521d49304c038ffeb1 Fri Feb 19 17:27:19 2021 -0800
Added counts to hgTrackUi facets. refs #25321
- src/hg/js/ui.dropdownchecklist.js
- lines changed 6, context: html, text, full: html, text
edbd78ba2667d41249ee0c521d49304c038ffeb1 Fri Feb 19 17:27:19 2021 -0800
Added counts to hgTrackUi facets. refs #25321
- src/hg/js/utils.js
- lines changed 2, context: html, text, full: html, text
edbd78ba2667d41249ee0c521d49304c038ffeb1 Fri Feb 19 17:27:19 2021 -0800
Added counts to hgTrackUi facets. refs #25321
- src/hg/lib/hgFind.c
- lines changed 22, context: html, text, full: html, text
a27219ced37a549f3b69bc79f07ea99a87439ecd Sat Feb 20 12:49:06 2021 -0800
Give user a chance to get non-short circuit hits if there's more than
one short circuit choice (otherwise just go to position). Add ability
to add trixSearch path to findSpecs. Add new find spec for hg38
gencodeV36 that only has canonical genes in it.
- src/hg/lib/protobuf.c
- lines changed 44, context: html, text, full: html, text
b02acec10d140c07a80616c5829575afe874984d Thu Feb 11 16:20:29 2021 -0800
Tolerate undefined fields in protobuf for forwards-compatibility with newer versions of protobuf spec (e.g. newer versions of UShER).
- src/hg/makeDb/cadd/caddToBed.py
- lines changed 5, context: html, text, full: html, text
382d7a0dacd948be55a2aa8548db7542a5e3335a Thu Feb 18 06:31:43 2021 -0800
fixing cadd deletions and inserts, refs #18492
- src/hg/makeDb/doc/asmHubs/master.run.list
- lines changed 19, context: html, text, full: html, text
783b567a31714776d150b1c1a3ad8ac32551225d Sat Feb 20 16:53:05 2021 -0800
catching up a few plants mammals fish refs #23891
- lines changed 228, context: html, text, full: html, text
20c1e38d61fc4b4e5c729bf27f484c223c0caa0c Sat Feb 20 16:55:20 2021 -0800
adding in the invertebrate refs #23891
- src/hg/makeDb/doc/hg19.txt
- lines changed 4, context: html, text, full: html, text
382d7a0dacd948be55a2aa8548db7542a5e3335a Thu Feb 18 06:31:43 2021 -0800
fixing cadd deletions and inserts, refs #18492
- lines changed 76, context: html, text, full: html, text
9eb265fc64110d5d873242c3a314253fa4032be2 Thu Feb 18 10:57:02 2021 -0800
updated wgRna track to version 20 2012-10-01 last release from miRNA base for GRCh37/hg19 refs #27017
- src/hg/makeDb/doc/hg38/lastzRuns.txt
- lines changed 78, context: html, text, full: html, text
86ae147ac68707dcb81a697e5e45f4619465097e Tue Feb 16 08:52:47 2021 -0800
completed lastz/chain/net to mm10 mm39 hg38 for rn7 release refs #26682
- src/hg/makeDb/doc/invertebrateAsmHub/hub.txt
- lines changed 6, context: html, text, full: html, text
ee17b20a161616975c6a942379aad8559b1d4fe9 Fri Feb 19 14:04:48 2021 -0800
initial set of 228 assemblies refs #27032
- src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv
- lines changed 228, context: html, text, full: html, text
ee17b20a161616975c6a942379aad8559b1d4fe9 Fri Feb 19 14:04:48 2021 -0800
initial set of 228 assemblies refs #27032
- lines changed 179, context: html, text, full: html, text
725541783be7166993e2f355ec5b27fb5144a495 Sun Feb 21 18:09:56 2021 -0800
unique common names and correct order refs #27032
- src/hg/makeDb/doc/invertebrateAsmHub/makefile
- lines changed 26, context: html, text, full: html, text
ee17b20a161616975c6a942379aad8559b1d4fe9 Fri Feb 19 14:04:48 2021 -0800
initial set of 228 assemblies refs #27032
- src/hg/makeDb/doc/mm10.txt
- lines changed 65, context: html, text, full: html, text
86ae147ac68707dcb81a697e5e45f4619465097e Tue Feb 16 08:52:47 2021 -0800
completed lastz/chain/net to mm10 mm39 hg38 for rn7 release refs #26682
- src/hg/makeDb/doc/mm39/lastzRuns.txt
- lines changed 6, context: html, text, full: html, text
86ae147ac68707dcb81a697e5e45f4619465097e Tue Feb 16 08:52:47 2021 -0800
completed lastz/chain/net to mm10 mm39 hg38 for rn7 release refs #26682
- src/hg/makeDb/doc/rn7/initialBuild.txt
- lines changed 298, context: html, text, full: html, text
86ae147ac68707dcb81a697e5e45f4619465097e Tue Feb 16 08:52:47 2021 -0800
completed lastz/chain/net to mm10 mm39 hg38 for rn7 release refs #26682
- src/hg/makeDb/doc/ucscGenes/hg38.gencodeV36.sh
- lines changed 6, context: html, text, full: html, text
a27219ced37a549f3b69bc79f07ea99a87439ecd Sat Feb 20 12:49:06 2021 -0800
Give user a chance to get non-short circuit hits if there's more than
one short circuit choice (otherwise just go to position). Add ability
to add trixSearch path to findSpecs. Add new find spec for hg38
gencodeV36 that only has canonical genes in it.
- src/hg/makeDb/genbank/etc/hgwbeta.dbs
- lines changed 2, context: html, text, full: html, text
82406bd60d6b59da3db92ab5d252234cf9ff270a Wed Feb 17 18:19:26 2021 -0800
Turning on Genbank updates for calJac4, refs #24074
- src/hg/makeDb/genbank/etc/rr.dbs
- lines changed 2, context: html, text, full: html, text
82406bd60d6b59da3db92ab5d252234cf9ff270a Wed Feb 17 18:19:26 2021 -0800
Turning on Genbank updates for calJac4, refs #24074
- src/hg/makeDb/trackDb/human/cadd.html
- lines changed 45, context: html, text, full: html, text
f372380b2189cb11d92e59d1526d1e7d519a8c01 Mon Feb 15 04:59:37 2021 -0800
updating docs page for cadd tracks, refs #18492
- lines changed 110, context: html, text, full: html, text
3a884d87e2f5198d79e8c628fad94112ed4d1a01 Mon Feb 15 05:48:31 2021 -0800
updating CADD track docs, refs #18492
- src/hg/makeDb/trackDb/human/cadd.ra
- lines changed 44, context: html, text, full: html, text
3a884d87e2f5198d79e8c628fad94112ed4d1a01 Mon Feb 15 05:48:31 2021 -0800
updating CADD track docs, refs #18492
- src/hg/makeDb/trackDb/human/caddSuper.html
- lines changed 110, context: html, text, full: html, text
3a884d87e2f5198d79e8c628fad94112ed4d1a01 Mon Feb 15 05:48:31 2021 -0800
updating CADD track docs, refs #18492
- src/hg/makeDb/trackDb/human/covidHgiGwasR4.html
- lines changed 1, context: html, text, full: html, text
0e9b24cc61c54f766934266e4f3246a3bbcda79e Mon Feb 15 14:32:11 2021 -0800
improved wording
- src/hg/makeDb/trackDb/human/covidHgiGwasR4Pval.html
- lines changed 1, context: html, text, full: html, text
0e9b24cc61c54f766934266e4f3246a3bbcda79e Mon Feb 15 14:32:11 2021 -0800
improved wording
- src/hg/makeDb/trackDb/human/encRegTfbsClustered.html
- lines changed 14, context: html, text, full: html, text
290ecad2fd65b22099441fdc740cf8f7ea163009 Fri Feb 19 14:48:22 2021 -0800
Adding data access refs #27021
- src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
- lines changed 3, context: html, text, full: html, text
65ef86e2524b019ce5d75db3fc03a19633a3fc6f Wed Feb 17 14:47:57 2021 -0800
Fix default visibility error in gnomad coverage, refs Ana email
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.release3.ra
- lines changed 2, context: html, text, full: html, text
5a8ec0c63608ace2c208d69dbcb62865a9e67f5d Wed Feb 17 11:11:52 2021 -0800
fixing default facet selections in dimensionXchecked settings. refs #25321
- src/hg/makeDb/trackDb/human/hg38/cons241way.html
- lines changed 2845, context: html, text, full: html, text
ee717c8af73f3a9aa13ba50ab77fadd7a83217ac Fri Feb 19 17:46:01 2021 -0800
241-way table is included other contents to be updated no redmine
- lines changed 493, context: html, text, full: html, text
2a6d7cd1611660565a79b512267a4dfcff29ea19 Fri Feb 19 18:01:48 2021 -0800
eliminate duplicate column in table no redmine
- src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra
- lines changed 9, context: html, text, full: html, text
a27219ced37a549f3b69bc79f07ea99a87439ecd Sat Feb 20 12:49:06 2021 -0800
Give user a chance to get non-short circuit hits if there's more than
one short circuit choice (otherwise just go to position). Add ability
to add trixSearch path to findSpecs. Add new find spec for hg38
gencodeV36 that only has canonical genes in it.
- src/hg/makeDb/trackDb/marmoset/calJac4/description.html
- lines changed 3, context: html, text, full: html, text
3ff4bcb3a8d4019c8881822fa6e1f18b73ee9b21 Thu Feb 18 14:24:55 2021 -0800
Chaning the HTML anchor to the existing marmoset section, refs #24074
- src/hg/makeDb/trackDb/marmoset/calJac4/trackDb.ra
- lines changed 2, context: html, text, full: html, text
a8a7a32631d2dedb2cd6293ebb83432a0a810ae0 Wed Feb 17 18:21:48 2021 -0800
Removing release tags for the NCBI RefSeq track for calJac4, refs #24074
- src/hg/makeDb/trackDb/mouse/mm39/mm39ChainNet.html
- lines changed 174, context: html, text, full: html, text
9ead742cca59371ff8d5a6ae074e6ad67430eefc Thu Feb 18 14:12:05 2021 -0800
initial page contents for generic chainNet composite set of tracks refs #26815
- lines changed 8, context: html, text, full: html, text
f7f10e81d9475120749ed69b88ecd9a9f271a468 Thu Feb 18 14:25:21 2021 -0800
correct Bob Harris reference refs #26815
- src/hg/makeDb/trackDb/mouse/mm39/trackDb.chainNet.ra
- lines changed 5, context: html, text, full: html, text
77d6a654308a4fbc60b27be7953110e374ccf5c8 Wed Feb 17 15:35:57 2021 -0800
Updating subTracks to be on for Rat, Malayan flying lemur, Human, Cow, and Zebrafish, refs #26815
- lines changed 19, context: html, text, full: html, text
ea4b3c3a34af4f378541b580ce64244477e1c776 Thu Feb 18 14:31:32 2021 -0800
adding rat rn7 to composite refs #26815
- lines changed 6, context: html, text, full: html, text
29cc3ccd1ddbbe52aa483c25d6419e3f778481df Thu Feb 18 14:40:26 2021 -0800
default on for the net tracks same set as chain tracks default on refs #26815
- src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra
- lines changed 8, context: html, text, full: html, text
3a27e971f06330b0b12552a8fa314279afbbf0b0 Thu Feb 18 11:53:54 2021 -0800
fix reference to mm39 to be $D
- src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra
- lines changed 270, context: html, text, full: html, text
71aa7746f5a5eeebf1262297a938c298467e74e1 Mon Feb 15 12:14:55 2021 -0800
adding rn7 and moving all rats to euarchontoglires refs #26682
- src/hg/makeDb/trackDb/trackDb.chainNet.ra
- lines changed 204, context: html, text, full: html, text
71aa7746f5a5eeebf1262297a938c298467e74e1 Mon Feb 15 12:14:55 2021 -0800
adding rn7 and moving all rats to euarchontoglires refs #26682
- src/hg/makeDb/trackDb/virus/wuhCor1/variantMuts.html
- lines changed 1, context: html, text, full: html, text
1add9c7fc8713868261a82092146c9d4b1c26d5d Tue Feb 16 16:40:47 2021 -0800
Fix typo in link, thanks Angie.o hapmapTrack.o rnaPLFoldTracr.t /hive/groups/bro/hive/groups/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive//grouut-riable -Wuninitiak.o retroGene.o hapmapTrack.o rnaPLFoldTracr.a /lLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extTools.o ../../hape -Wempty-ck.o retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTrack.o hgTracks mainMain.o adjacencyTrack.o pubk.o pubsTracks.o altGraphXTrac wiki.o wkate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -Wimplicit -Wretuer/home/kate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -64/oeAtlasTrack.o pslTrack/oeAtlasTrack.o pslTrack.o rmskJoinedTracnt/src/hg/hgTracks/hgTracks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauome.o rnib64/.a /hive/groups/browser/hal/hib64/.a cks c -ome.o rnaut-set-variable -Wuninitiin.a /hive/groups/browselease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mr/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTracks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extToolsut-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extTools.o ../../hape -Wempty-body -Wunused-but-se -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.oroups/icit -Wreturn-type -Wempty-body -Wase/lib/libhdf5_cpp.a /hive/groups/broexariaaselRelease/lib/halLiftover.a /hive/groups/browser/hal/halRelease/lib/halLod.a /hive/grouut-riable -Wuninitiak.o retroGene.o hapmapTrack.o rnaPLFoldTracr.a /hive/groups/bro/hive/groups/bro sampleTracks.o searchTracks.ob/halLiftover.a /hive/grouhive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauomep/browser/hal/halRelease/lib/halLod.a /hive/groups/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTracpe -ntainer.o contihartTrack.o bedGraph.o bedTrack.o ltGraphXTrac wiki.o wikiTrack.o imageV2.o extToolrowck.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extTools.o ../../hape -Wempty-body -Wunused-but-se -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.oroups/icit -Wreturn-type -Wempty-body -Wunused-but-set-variabx86_64/jkweb.a .skTrack.o sampleTracks.o oexariable -Wrack.o sampleTracks.o searchTracks.o simpleTraTrack.o pubsTracks.o altGraphXTrac wiki.o wie/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jkweb.a ../../lib/x86_64/oeAtlskJoinedTrack.o rmskTraskJoinedTrack.o rmskTrack.o sampleTracks.o searchTracks.o simpleTrs/browser/hal/halRelease/lib/halLiftover.a /hive/groups/browser/hal/halRelease/lib/halLod.a /hive/grouut-riable -Wuninitiak.o retroGene.o hapmapTrack.o rnaPLFoldTracr.a /hive/groups/bro/hive/groups/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTTracks.o searchTracks.o simpleTraTrack.o pubTrasearchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmabTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTrack.o hgTracks mainMain.o adjacencyTrack.o pubk.o pubsTracks.o altGraphXTrac wiki.o wkate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -Wimplicit -Wretuer/home/kate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -64/oeAtlasTrack.o pslTrack.o rmskJoinedTracnt/src-but-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extTools.o ../../hape -Wempty-ck.o retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTrack.o hgTracks mainMain.o adjacencyTrack.o pubk.o pubsTracks.o altGraphXTrac wiki.o wkate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -Wimplicit -Wretuer/home/kate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -64/oeAtlasTrack.o pslTrack.o rmskJoinedTracnt/ase/lib/libhdf5_cpp.a /hive/groups/broexariaase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMasn.o adjacencyTrack.o ase/lib/libhdf5_cpp.a /hiv2.o extTools.o ../../hape -Wempty-body -Wunused-but-se -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.oroups/icit -Wreturn-type -Wempty-body -Wunused-but-set-variable -Wuninitializedck.o sampleTracks.o ig.o TwitchGear.o trans/lib/halLiftover.a 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s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTracpe -ntainer.o contihartTrack.o bedGraph.o bedTrack.o ltGraphXTrac wiki.o wikiTrack.o imageV2.o extToolrowser/hal/halRelease/lTracks.o searchTracks.o simpleTraTrack.o pubTracks.o searchTracks.o simpleTraTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jko bedTrack.o bigBedTrack.o bigWarn.o bigWigTrack.o chainTeTrack.o sortWi../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmsktover.a /hive/groups/browser/hal/hallibhd5se/lib/sonLib.a /hive/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGrapTrTrac wiki.o wikiTrackTracks.o searchTracks.o si/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrackwo retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o /bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrackwo retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adja rnaPLFoldTracr.a /hive/groups/bro/hive/groups/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmabTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTrack.o hgTracks mainMain.o adjacencyTrack.o pubk.o pubsTracks.o altGraphXTrac wiki.o wkate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -Wimplicit -Wretuer/home/kate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -64/oeAtlasTrack.o pslTrack.o rmskJoinedTracnt/src/hg/hgTracks/hgTracks c -ome.o rnaFoldTraase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXn.o adjacencyTrack.o ase/li/libhdf5_cpp.a /hive/groups/broexariaase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialize/libhdf5_cpp.a /hive/groups/broexariaase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTrackso sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extTools.o ../../hape -Wempty-body -Wunused-but-se -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.oroups/icit -Wreturn-type -Wempty-body -Wunused-but-set-variable -Wuninitializedck.o sampleTracks.o ig.o TwitchGear.o trans/lib/halLiftover.a /hive/grouhive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauomep/browser/hal/halRelease/lib/halLod.a /hive/groups/bro sampleTracks.o searchTraase/lib/libhdf5_cpp.a /hive/groups/broexariaase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTracks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-typToolrowser/hal/halReleaseut-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTraTrac wiki.o wikiTrackTrackso searchTracks.o simpleTraTragit add covidHgiGwasR4cks c -ome.o rnaut-r/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTro bigWarn.o bigWigTrack.o chainTeTrack.o sortWi../../lib/x86_64/oeAtlasTrack.o pslTrack.o searchTracks.o simpleTraTragit add covidHgiGwasR4cks c -ome.o rnaut-r/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTro bigWarn.o bigWigTrack.o chainTeTrack.o sortWi../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmsktover.a /hive/groups/browser/hal/hallibhd5se/lib/sonLib.a /hive/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o aGene.o hapmapTrack.o rnaPLFoldTracr.a /hive/groups/bro/hive/groups/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrackwo retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTraTracks.o searchTracks.o simpleTraTrack.o pubTracks.o searchTracks.o simpleTraTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jko bedTrack.o bigBedTrack.o bigWarn.o bigWigTrack.o chainTeTrack.o sortWi../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmsktover.a /hive/groups/browser/hal/hallibhd5se/lib/sonLib.a /hive/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jkweb.a ../../lib/x86_64/oeAtlskJoinedTrack.o cnt/src/hg/hgTracks/hgTraskTrack.o sampleTracks.o searchTracks.o simpleTrs/browser/hal/halRelease/lib/halLiftover.a /hive/groups/browser/hal/halRelease/lib/halLod.a /hive/grouut-riable -Wuninitiak.o retroGene.o hapmapTrack.o rnaldTrack.o retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTrack.o hgTracks mainMain.o adjacencyTrack.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTrack.o hgTracks mainMain.o adjacencyTrack.o pubk.o pubsTracks.o altGraphXTrac wiki.o wkate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -Wimplicit -Wretuer/home/kate/kent/srat-security -64/oeAtlasTrack.o pslTrack.o rmskJoinedTracnt/ase/lib/libhdf5_cpp.a /hive/groups/broexariaase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o ase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTracks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-typToolrowser/hal/halReleaseut-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ..ns/lib/halLiftover.a /hive/grouhive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauomep/browser/hal/halRelease/lib/halLod.a /hive/groups/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/libampleTracks.o ig.o switchGear.o trans/lib/halLiftover.a /hive/grouhive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauomep/browser/hal/halRelease/lib/halLod.a /hive/groups/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTracpe -ntainer.wiki.o wikiTrack.o imageV2.o extToolrowser/hal/halRelease/lTracks.o searchTracks.o simpleTraTragit add covidHgiGwasR4cks c -ome.o rnaut-r/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTro bigWarn.o bigWigTrack.o chainTeTrack.o sortWi../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmsktover.a /hive/groups/browser/hal/hallibhd5se/lib/sonLib.a /hive/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrackTracks.o searchTracks.o simpleTraTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jko bedTrack.o bigBedTrack.o bigWarn.o bigWigTrack.o chainTeTrack.o sortWi../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmsktover.a /hive/groups/browser/hal/hallibhd5se/lib/sonLib.a /hive/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jkweb.a ../../lib/x86_64/oeAtlskJoinedTrack.o cnt/src/hg/hgTracks/hgTraskTrack.o sampleTracks.o searchTracks.o simpleTrs/browser/hal/halRelease/lib/halLiftover.a /hive/groups/browser/hal/halRelease/lib/halLod.a /hive/grouut-riable -Wuninitiak.o retroGene.o hapmapTrack.o rnaPLFoldTracr.a /hive/groowser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTracks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-typToolrowser/hal/halReleaseut-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extTools.o ../../hape -Wempty-body -Wunused-but-se -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.oroupswser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTracks c -ome.o rnaFoldTraclencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTracks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-typToolrowser/hal/halReleaseut-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extTools.o ../../hape -Wempty-body -Wunused-but-se -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.oroups/icit -Wreturn-type -Wempty-body -Wunused-but-set-variable -Wuninitializedck.o sampleTracks.o ig.o TwitchGear.o trans/lib/halLiftover.a /hive/grouhive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauomep/browser/hal/halRelease/lib/halLod.a /hive/groups/bro sampleTracks.o searchTraase/lib/libhdf5_cpp.a /hive/groups/broexariaase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.rac wiki.o wikiTrack.o imageV2.o extToolrowser/hal/halRelease/lTracks.o searchTracks.o simpleTraTragit add covidHgiGwasR4cks c -ome.o rnaut-r/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTro bigWarn.o bigWigTrack.o chainTeTrack.o sortWi../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmsktover.a /hive/groups/browser/hal/hallibhd5se/lib/sonLib.a /hive/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrackTracks.o searchTracks.o simpleTraTrack.o pubsTracks.o altGraphive/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jkweb.a ../../lib/wser/hal/hallibhd5se/lib/sonLib.a /hive/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o 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rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTrack.o hgTracks mainMain.o adjacencyTrack.o pubk.o pubsTracks.o altGraphXTrac wiki.o wkate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -Wimplicit -Wretuer/home/kate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -64/oeAtlasTrack.o pslTrack.o rmskJoinedTracnt/ase/lib/libhdf5_cpp.a /hive/groups/broexariaase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o ase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a 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altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTracks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-typToolrowser/hal/halReleaseut-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/cyTrack.o hgTracks mainMain.o adjacencyTrack.o pubk.o pubsTracks.o altGraphXTrac wiki.o wkate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -Wimplicit -Wretuer/home/kate/kent/src/hg/sed-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extTools.o ../../hape -Wempty-ck.o retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTrack.o hgTracks mainMain.o adjacencyTrack.o pubk.o pubsTracks.o altGraphXTrac wiki.o wkate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -Wimplicit 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adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jkweb.a ../../lib/x86_64/oeAtlskJoinedTrack.o rmskTraskJoinedTrack.o rmskTrack.o sampleTracks.o searchTracks.o simpleTrs/browser/hal/halRelease/li.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTracpe -ntainer.o conal/halRelease/lib/halLod.a /hive/grouut-riable -Wuninitiak.o retroGene.o hapmapTrack.o rnaPLFoldTracr.a /hive/groups/bro/hive/groups/bro sampleTracks.o searchTracks.ob/halLiftover.a /hive/grouhive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauomep/browser/hal/halRelease/lib/halLod.a /hive/groups/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTracpe -ntainer.o contihartTrack.o bedGraph.o bedTrack.o ltGraphXTrac wiki.o wikiTrack.o imageV2.o extToolrowser/hal/halRelease/lTracks.o searchTracks.o sTracks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauome.o rnib64/.a /hive/groups/browser/hal/hib64/.a /hive/groups/browser/hal/halRelease/alChain.a /hive/groups/browselease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mr/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTracks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crybto -ldl ../../htsack.o imageV2.o extToolsut-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extTools.o ../../hape -Wempty-body -Wunused-but-seMain.o adjacencyTrack.o pubk.o pubsTracks.o altGraphXTrac wiki.o wkate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -Wimplicit -Wretuer/home/kate/kent/src/hg/hgTracks/hgTracks c -Waser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmabTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTrack.o hgTracks mainMain.o adjacencyTrack.o pubk.o pubsTracks.o altGraphXTrac wiki.o wkate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -Wimplicit -Wretuer/home/kate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -64/oeAtlasTrack.o pslTrack.o rmskJoinedTracnt/src/hg/hgTracks/hgTracks c -ome.o rnaFoldTraase/ormat -Wformat-security -64/oeAtlasTrack.o pslTrack.o rmskJoinedTracnt/src/hg/hgTracks/hgTracks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variaase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wrack.o sampleTracks.o searchTracks.o simpleTraTrack.o pubsTracks.o altGraphXTrac wiki.o wie/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jkweb.a ../../lib/x86_64/oeAtlskJoinedTrack.o rmskTraskJoinedTrack.o rmskTrack.o sampleTracks.o searchTracks.o simpleTrs/browser/hal/halRelease/lib/halLiftover.a /hive/groups/browser/hal/halRelease/lib/halLod.a /hive/grouut-riable -Wuninitiak.o retroGene.o hapmapTrack.o rnaPLFoldTracr.t /hive/groups/bro/hive/groups/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive//grouut-riable -Wuninitiak.o retroGene.o hapmapTrack.o rnaPLFoldTracr.a /hive/groups/bro/hive/groups/bro samGraphXTrac wiki.o wracks.o simpleTrut-se -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.oroups/icit -Wreturn-type -Wempty-body -Wunused-but-set-variable -Wuninitializedck.o sampleTracks.o ig.o TwitchGear.o trans/lib/halLiftover.a /hive/grouhive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauomep/browser/hal/halRelease/lib/halLod.a /hive/groups/bro sampleTracks.o searchTraase/lib/libhdf5_cpp.a /hive/groups/broexariaase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauome.o rnib64/.a /hive/groups/browser/hal/hib64/.a cks c -ome.o rnaut-set-variable -Wuninitiin.a /hive/groups/browselease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mr/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTracks c -ome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extToolsut-set-variable -Wuninitialized -o hgTracks mauome.o rnaFoldTraclLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extTools.o ../../hape -Wempty-body -Wunused-but-se -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.oroups/icit -Wreturn-type -Wempty-body -Wase/lib/libhdf5_cpp.a /hive/groups/broexariaase/lib/libhdf5_cpp.a /hive/groups/broMain.o adjacencyTraalized -o hgTrac snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrackwo retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTraTracks.o searchTracks.o simpleTraTrack.o pubTracks.o searchTracks.o simpleTraTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jko bedTrack.o bigBedTrack.o bigWarn.o bigWigTrack.o chainTeTrack.o sortWi../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmsktover.a /hive/groups/brogeV2.o extTools.o ../../hape -Wempty-body -Wunused-but-se -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.oroups/icit -Wreturn-type -Wempty-body -Wunused-but-set-variabx86_64/jkweb.a .skTrack.o sampleTracks.o oexariable -Wrack.o sampleTracks.o searchTracks.o simpleTraTrack.o pubsTracks.o altGraphXTrac wiki.o wie/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jkweb.a ../../lib/x86_64/oeAtlskJoinedTrack.o rmskTraskJoinedTrack.o rmskTrack.o sampleTracks.o searchTracks.o simpleTrs/browser/hal/halRelease/lib/halLiftover.a /hive/groups/browser/hal/halRelease/lib/halLod.a /hive/grouut-riable -Wuninitiak.o retroGene.o hapmapTrack.o rnaPLFoldTracr.a /hive/groups/bro/hive/groups/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTTracks.o searchTracks.o simpleTraTrack.o pubTracks.o searchTracks.o simpleTraTrackrack.o imageV2.o exGraphXTrac wiki.df5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o ase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninils /usr/local/apwser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o alt.o adjacencyTrack.o a /hive/grolLib.a /hive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized af.a /hive/grikio snakeTrack.o sortWig.o switcho.a -lkrb5 -lk5crypto -ldl ../../htsack.o imageV2.o extTools.o ../../hape -Wempty-ck.o retroGene.o hapmapTracpe -ntainer.o contihar4/jkweb.a ../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmskJoinedTrack.o rmskTracc -Wall -Werror -/lib/halLib.a /hive/groups/browser/hal/halRelo hgTracks mainMain.o adjacencyTrack.o hgTracks mainMain.o adjacencyTrack.o pubk.o pubsTracks.o altGraphXTrac wiki.o wkate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -Wimplicit -Wretuer/home/kate/kent/src/hg/hgTracks/hgTracks c -Wall -Werror -Wformat -Wformat-security -64/oeAtlasTrack.o pslTrack.o rmskJoinedTracnt/ase/lib/libhdf5_cpp.a /hive/groups/broexariaase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adelease/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o a /hive/groups/brow/browser/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMasn.o adjacencyTrack.o ase/lib/libhdf5_cpp.a /hive/groups/broexariable -Wuninitializzed -o hgTracks maiMain.o adjacencyR4cks c -ome.o rnaut-r/hhal/halmplicit -Wreturn-ty -Wuninitialized -o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.ohgTro bigWarn.o bigWigTrack.o chainTeTrack.o sortWi../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmsktover.a /hive/groups/browser/hal/hallibhd5se/lib/sonLib.a /hive/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrackTracks.o searchTracks.o simpleTraTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jko bedTrack.o bTracks.o simpleTraTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ..oups/browser/hal/hallibhd5se/lilRelease/lib/halLiftover.a /hive/groups/browser/hal/halRelease/lib/halLod.a /hive/grouut-riable -Wuninitiak.o retroGene.o hapmapTrack.o rnaPLFoldTracr.a /hive/groups/bro/hive/groups/bro sampleTracks.o searchTracks.ob/halLiftover.a /hive/grouhive/groups/brown-type -Wempty-body -Wunused-but-set-variable -Wuninitialized -o hgTracks mauomep/browser/hal/halRelease/lib/halLod.a /hive/groups/bro sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o s/browser/hal/halRelease/lib/libhdf5_cpp.a /hive/groups/broewigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTracpe -ntainer.o contihartTrack.o bedGraph.o bedTrack.o ltGraphXTrac wiki.o wikiTrack.o imageV2.o extToolrowser/hal/halRelease/lTracks.o searchTracks.o simpleTraTrack.o pubTracks.o searchTracks.o simpleTraTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jko bedTrack.o bigBedTrack.o bigWarn.o bigWigTrack.o chainTeTrack.o sortWi../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmsktover.a /hive/groups/browser/hal/hallibhd5se/lib/sonLib.a /hive/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGrapTrTrac wiki.o wikiTrackTracks.o searchTracks.o simpleTraTrack.o pubsTracks.o altGrapphXTrac wiki.o wikirack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jko bedTrack.o bigBedTrack.o bigWarn.o bigWigTrack.o chainTeTrack.o sortWi../../lib/x86_64/oeAtlasTrack.o pslTrack.o rmsktover.a /hive/groups/browser/hal/hallibhd5se/lib/sonLib.a /hive/g-o hgTracks mainMain.o adjacencyTrack.o pubsTracks.o altGraphXTrac wiki.o wikiTrack.o imageV2.o extTools.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jkweb.a ../../lib/x86_64/oeAtlskJoinedTragrep tissueFactor *.c refs #26876
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a6de09f6508712c261960498dfc0576d0fd2b60b Wed Feb 17 12:21:42 2021 -0800
Small changes to var track refs #27011
- src/hg/makeDb/trackDb/virus/wuhCor1/variantMuts.ra
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a6de09f6508712c261960498dfc0576d0fd2b60b Wed Feb 17 12:21:42 2021 -0800
Small changes to var track refs #27011
- src/hg/utils/automation/doSimpleRepeat.pl
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6ab36842251a96177c547bf37f5cc6157342eaa2 Tue Feb 16 14:51:34 2021 -0800
eliminate a duplicate remove of tmp.chrom.sizes no redmine
- src/hg/utils/automation/verifyBrowser.pl
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6ba4f09fcc1fd9831ff2da23ddeef5740837d90c Tue Feb 16 08:58:29 2021 -0800
add in mm39 default chainNet table check refs #26682
- src/hg/utils/otto/uniprot/doUniprot
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bb3efd1b30b2fe47ce45c3c336f8982b5c7a7463 Thu Feb 18 06:32:41 2021 -0800
tiny change to uniprot pipeline, no redmine
- src/inc/psl.h
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b475ddc8795329be93a783760d7aed704131d479 Wed Feb 17 01:48:32 2021 -0800
adding JSON output to hgBlat, refs #27010
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38791fcc8e27d95bf1ecde01035aae26027f956b Thu Feb 18 05:05:17 2021 -0800
making hgBlat json format look more like our API, refs #27010
- src/lib/psl.c
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b475ddc8795329be93a783760d7aed704131d479 Wed Feb 17 01:48:32 2021 -0800
adding JSON output to hgBlat, refs #27010
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e705ce240cb855d55092b6b80c8f2dec1822aa74 Wed Feb 17 02:08:30 2021 -0800
fixing various bugs in hgBlat json output, refs #27010
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38791fcc8e27d95bf1ecde01035aae26027f956b Thu Feb 18 05:05:17 2021 -0800
making hgBlat json format look more like our API, refs #27010
- src/utils/chromToUcsc/tests/makefile
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b30a401cf1561a0450fafd9017704241eaa026c2 Thu Feb 18 06:33:45 2021 -0800
forgot to add makefile in an older commit, refs #26959
- src/utils/qa/weeklybld/buildEnv.csh
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026fbaf8890e85b00bed990c2e75a703e19982b8 Mon Feb 22 10:10:29 2021 -0800
v411 preview2, refs #27028
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