All File Changes

v410_preview2 to v410_base (2021-02-01 to 2021-02-08) v410

• confs/asia.hg.conf
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    af3fa47c8c8ef1fc758795fe73f3ebe8433a4c4d Sun Feb 7 01:11:46 2021 -0800
    Installing updated hg.conf files from UCSC servers
• confs/euro.hg.conf
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    af3fa47c8c8ef1fc758795fe73f3ebe8433a4c4d Sun Feb 7 01:11:46 2021 -0800
    Installing updated hg.conf files from UCSC servers
• confs/hgwbeta.hg.conf
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    af3fa47c8c8ef1fc758795fe73f3ebe8433a4c4d Sun Feb 7 01:11:46 2021 -0800
    Installing updated hg.conf files from UCSC servers
• confs/rr.hg.conf
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    af3fa47c8c8ef1fc758795fe73f3ebe8433a4c4d Sun Feb 7 01:11:46 2021 -0800
    Installing updated hg.conf files from UCSC servers
• src/browserbox/README.txt
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    e5233678576cb7a09356141c4e016d2db87d5b4f Wed Feb 3 05:19:28 2021 -0800
    fixing GBIB space problems, step 1, by moving cgi-bin and htdocs to the /data partition (which is limited at 2TB, which will be step 2), refs #26866
• src/browserbox/makefile
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    1e43c3834a08e0bcc8d1833376d389e231e3d7cb Wed Feb 3 06:28:54 2021 -0800
    fixing a bug in the previous gbib solution that removed the symlinks, refs #26866
• src/browserbox/root/updateBrowser.sh
  • lines changed 3, context: html, text, full: html, text
    de291077a84ac6096e26788998369aa1cad5320f Mon Feb 1 16:34:16 2021 -0800
    Fixing missing knownCds table on gbibs, refs #26781
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    e5233678576cb7a09356141c4e016d2db87d5b4f Wed Feb 3 05:19:28 2021 -0800
    fixing GBIB space problems, step 1, by moving cgi-bin and htdocs to the /data partition (which is limited at 2TB, which will be step 2), refs #26866
  • lines changed 7, context: html, text, full: html, text
    1e43c3834a08e0bcc8d1833376d389e231e3d7cb Wed Feb 3 06:28:54 2021 -0800
    fixing a bug in the previous gbib solution that removed the symlinks, refs #26866
• src/hg/hgBlat/hgBlat.c
  • lines changed 12, context: html, text, full: html, text
    59577453a851bdc6ed543d4c63335d5dcceefa06 Thu Feb 4 04:55:06 2021 -0800
    adding help directly to hgBlat output, refs #26918
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    b1555e4fe1146884d59fbca26c95e4b4b9f342c6 Mon Feb 8 08:16:05 2021 -0800
    adding notes about _alt/_fix etc to hgPcr and fixing the ones on hgBlat.c refs #26918
• src/hg/hgGateway/hgGateway.c
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    ac0ae4405481be61afc8f6e74d67aeac6b6f0e64 Tue Feb 2 11:07:48 2021 -0800
    fix SQL query missing closing paren refs #26893 #24074
• src/hg/hgGeneGraph/hgGeneGraph
  • lines changed 1, context: html, text, full: html, text
    c4b8e1318ff21c475d4163fa633b258f8cd2cd84 Tue Feb 2 04:51:10 2021 -0800
    fixing negatome bug in hgGeneGraph, refs #26909
• src/hg/hgPcr/hgPcr.c
  • lines changed 43, context: html, text, full: html, text
    b1555e4fe1146884d59fbca26c95e4b4b9f342c6 Mon Feb 8 08:16:05 2021 -0800
    adding notes about _alt/_fix etc to hgPcr and fixing the ones on hgBlat.c refs #26918
• src/hg/hgPhyloPlace/hgPhyloPlace.c
  • lines changed 6, context: html, text, full: html, text
    2167996398e3f11c6eefa1c2b3676a7726a49e4f Fri Feb 5 09:28:08 2021 -0800
    Mention sources of public sequences so it doesn't sound like we only use GISAID sequences.
• src/hg/hgPhyloPlace/phyloPlace.c
  • lines changed 2, context: html, text, full: html, text
    161870e01da2bfa9723b388eec3fd590b921a1cf Wed Feb 3 13:46:42 2021 -0800
    Add NULL check in case metadata file is not found.
• src/hg/hgc/hgcData/barChartBoxplot.R
  • lines changed 4, context: html, text, full: html, text
    3f39ef5106b08e8c03f7e9e3eaf931eb9c1b0ff4 Mon Feb 1 14:30:27 2021 -0800
    Suppress excess default label (default with new version of R) on bigBarChart and barChart boxplots them since we draw them on manually later anyways, refs #26851
• src/hg/hgc/hgcData/gtexBoxplot.R
  • lines changed 2, context: html, text, full: html, text
    3f39ef5106b08e8c03f7e9e3eaf931eb9c1b0ff4 Mon Feb 1 14:30:27 2021 -0800
    Suppress excess default label (default with new version of R) on bigBarChart and barChart boxplots them since we draw them on manually later anyways, refs #26851
• src/hg/htdocs/covid19.html
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    c549849a401de48898884193ef4e3f493689047d Mon Feb 1 10:20:10 2021 -0800
    Tweak wording on COVID pages and links to improve search. refs #26897
  • lines changed 6, context: html, text, full: html, text
    cf0611d6cdc0706ce0fb9f19f58a97bc951da578 Mon Feb 1 12:41:57 2021 -0800
    Announcement for COVID 6th data release refs #26836
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    9889002e207e640196d1266a4faee596781ee156 Mon Feb 1 16:56:47 2021 -0800
    Updating date No RM
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    a66b414968cb874d0fc01e675e0c0b534e3b9bcf Wed Feb 3 12:43:53 2021 -0800
    Updating the date for the COVID landing page, refs #26897
• src/hg/htdocs/goldenPath/help/bigChain.html
  • lines changed 8, context: html, text, full: html, text
    1730ff9edd3add19e65f8b50f4d51052e3285cb1 Fri Feb 5 12:13:53 2021 -0800
    Adding input from user on backslash on sed command and other fix and wget command to bigChain.html refs #26935
• src/hg/htdocs/goldenPath/help/mirrorManual.html
  • lines changed 212, context: html, text, full: html, text
    e68feeac1d9b49e6792edb0d6665f961c14572d6 Mon Feb 8 05:02:32 2021 -0800
    fixing the mirrorManual moving the git clone step before the installation step, #26934
• src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.v2.html
  • lines changed 2, context: html, text, full: html, text
    1d9d2e6d28ca45660c8f1f8500f4579538c22741 Thu Feb 4 15:32:33 2021 -0800
    Fixing typo for refs #25902
• src/hg/htdocs/goldenPath/history.html
  • lines changed 10, context: html, text, full: html, text
    08cff2587b54cb7b5e15fdde214a97ec0d0616d1 Tue Feb 2 10:25:03 2021 -0800
    Adding more information about the first working draft and fixing a timing issue about the intronerator work. (input from Jim) refs #20314
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 38, context: html, text, full: html, text
    cf0611d6cdc0706ce0fb9f19f58a97bc951da578 Mon Feb 1 12:41:57 2021 -0800
    Announcement for COVID 6th data release refs #26836
  • lines changed 11, context: html, text, full: html, text
    05245678ceed92500c24bc6d3b322469df7c7f4f Mon Feb 1 16:13:37 2021 -0800
    Fixing typos #26836
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    8dc9113f11c24fa4f7cd9a7bc2b655114fcfc085 Tue Feb 2 13:43:54 2021 -0800
    Announcing mm39 consv track #26584
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    42d3675e2b475a18d1f19f6fbe32e59a74977172 Tue Feb 2 13:57:18 2021 -0800
    Typo fix
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    b70a4824b82f364ffc899804251592d770a4e0fc Wed Feb 3 15:32:43 2021 -0800
    After reverting git * of file, I am re-committing the ones I wanted refs #24598
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    78e745d71ef8537291e7b30c9ac6765ac35daae9 Wed Feb 3 16:02:59 2021 -0800
    Typo fix refs #24598
• src/hg/htdocs/inc/globalNavBar.inc
  • lines changed 1, context: html, text, full: html, text
    c549849a401de48898884193ef4e3f493689047d Mon Feb 1 10:20:10 2021 -0800
    Tweak wording on COVID pages and links to improve search. refs #26897
• src/hg/htdocs/indexNews.html
  • lines changed 11, context: html, text, full: html, text
    cf0611d6cdc0706ce0fb9f19f58a97bc951da578 Mon Feb 1 12:41:57 2021 -0800
    Announcement for COVID 6th data release refs #26836
  • lines changed 12, context: html, text, full: html, text
    8dc9113f11c24fa4f7cd9a7bc2b655114fcfc085 Tue Feb 2 13:43:54 2021 -0800
    Announcing mm39 consv track #26584
  • lines changed 15, context: html, text, full: html, text
    b70a4824b82f364ffc899804251592d770a4e0fc Wed Feb 3 15:32:43 2021 -0800
    After reverting git * of file, I am re-committing the ones I wanted refs #24598
• src/hg/htdocs/indexStory.html
  • lines changed 2, context: html, text, full: html, text
    f54441c47d88f3c6ad079147643c8832e6d9a259 Tue Feb 2 13:40:58 2021 -0800
    Adding a link to the Our story section on the index.html page, refs #20314
• src/hg/htdocs/indexTools.html
  • lines changed 2, context: html, text, full: html, text
    c549849a401de48898884193ef4e3f493689047d Mon Feb 1 10:20:10 2021 -0800
    Tweak wording on COVID pages and links to improve search. refs #26897
• src/hg/hubApi/hubApi.c
  • lines changed 1, context: html, text, full: html, text
    e8d55d40ff0495dd97941c256f810b6505955e7e Wed Feb 3 21:53:39 2021 -0800
    the Plants hub is obsolete for a default now using Synonymous Constraint no redmine
• src/hg/inc/versionInfo.h
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    22aeab2a8676808f9b2ec675b41c2946ef2800f6 Mon Feb 8 12:10:32 2021 -0800
    New version number v410
• src/hg/js/hgTracks.js
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    9cb1c014fe8ede37d3bf519a62746731b44c7bc5 Tue Feb 2 07:06:05 2021 -0800
    style update code review refs #26904
• src/hg/makeDb/doc/asmHubs/hubIndex.pl
  • lines changed 210, context: html, text, full: html, text
    13ca91a9d4a1ed3169fb78c4f39be9cbe5eb4869 Tue Feb 2 14:48:17 2021 -0800
    scripts used on hgdownload to construct text list of hubs and top level index.html page refs #23891
• src/hg/makeDb/doc/asmHubs/hubList.sh
  • lines changed 46, context: html, text, full: html, text
    13ca91a9d4a1ed3169fb78c4f39be9cbe5eb4869 Tue Feb 2 14:48:17 2021 -0800
    scripts used on hgdownload to construct text list of hubs and top level index.html page refs #23891
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 35, context: html, text, full: html, text
    6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
    catching up recently finished assembly hub builds and uniq common names refs #23891
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    1c60aec14fd14f3594fbbfe765f3594223e36f25 Tue Feb 2 14:54:28 2021 -0800
    adding the troublesome primate assembly refs #23891
• src/hg/makeDb/doc/asmHubs/mkGenomes.pl
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    6f3824a64a095636d23b144a7536a1f5a8779f07 Tue Feb 2 14:54:54 2021 -0800
    better error exit on broken orderList refs #23891
• src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv
  • lines changed 18, context: html, text, full: html, text
    6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
    catching up recently finished assembly hub builds and uniq common names refs #23891
  • lines changed 1, context: html, text, full: html, text
    e204336831dd2fccd93b1aabc4d647c933ba8dbc Tue Feb 2 14:53:39 2021 -0800
    fixup a couple names refs #23891
• src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv
  • lines changed 34, context: html, text, full: html, text
    6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
    catching up recently finished assembly hub builds and uniq common names refs #23891
• src/hg/makeDb/doc/grcM38P6.txt
  • lines changed 389, context: html, text, full: html, text
    c05cfd40266e98367a883cd3737959533cef01cd Fri Feb 5 09:57:03 2021 -0800
    Initial work for mm10 patches: create db grcM38P6 with patch sequences and annotations. refs #25045
• src/hg/makeDb/doc/hg19.txt
  • lines changed 33, context: html, text, full: html, text
    aa4117a4a17ef2851a89e2132bba5d11bd4bf5b5 Wed Feb 3 10:56:39 2021 -0800
    Add make doc for targetScan V7.2. refs #26287
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
  • lines changed 6, context: html, text, full: html, text
    6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
    catching up recently finished assembly hub builds and uniq common names refs #23891
  • lines changed 0, context: html, text, full: html, text
    e204336831dd2fccd93b1aabc4d647c933ba8dbc Tue Feb 2 14:53:39 2021 -0800
    fixup a couple names refs #23891
• src/hg/makeDb/doc/mm10.scanAssemblyReport.pl
  • lines changed 99, context: html, text, full: html, text
    c05cfd40266e98367a883cd3737959533cef01cd Fri Feb 5 09:57:03 2021 -0800
    Initial work for mm10 patches: create db grcM38P6 with patch sequences and annotations. refs #25045
• src/hg/makeDb/doc/mm39/lastzRuns.txt
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    d42b1cf12daaba8db0c8faa736548d6d1edb0f30 Fri Feb 5 13:21:16 2021 -0800
    adding make doc for the runs that were all automatic refs #26815
• src/hg/makeDb/doc/primatesAsmHub/primates.orderList.tsv
  • lines changed 2, context: html, text, full: html, text
    6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
    catching up recently finished assembly hub builds and uniq common names refs #23891
  • lines changed 2, context: html, text, full: html, text
    e204336831dd2fccd93b1aabc4d647c933ba8dbc Tue Feb 2 14:53:39 2021 -0800
    fixup a couple names refs #23891
• src/hg/makeDb/doc/rn7/initialBuild.txt
  • lines changed 1256, context: html, text, full: html, text
    102685aae3c6965281c5de9b14337f73995c204f Wed Feb 3 16:59:19 2021 -0800
    running repeat masker and simple repeats refs #26682
• src/hg/makeDb/doc/ucscGenes/hg38.gencodeV36.sh
  • lines changed 81, context: html, text, full: html, text
    cd1c11ae2a758a6c3a8902472a3017f35bd85220 Sat Feb 6 12:15:53 2021 -0800
    tweaks to gencode V36
• src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv
  • lines changed 14, context: html, text, full: html, text
    6b96e53a208eaadaf940e392a5decc7f83a1e859 Tue Feb 2 13:25:01 2021 -0800
    catching up recently finished assembly hub builds and uniq common names refs #23891
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    8227afe8706dad285f0bcef3213f8e4643f899d4 Thu Feb 4 09:44:06 2021 -0800
    Added rn7 - rat refs #26682
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 18, context: html, text, full: html, text
    e26e5b3e3ef27f2cdab7877d465e50b73f25508c Thu Feb 4 09:42:23 2021 -0800
    Added rn7 rat refs #26682
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 4, context: html, text, full: html, text
    8227afe8706dad285f0bcef3213f8e4643f899d4 Thu Feb 4 09:44:06 2021 -0800
    Added rn7 - rat refs #26682
• src/hg/makeDb/outside/gencode/lib/gencode/biotypes.py
  • lines changed 4, context: html, text, full: html, text
    4431d0ac7acbf7aada166a743d28f05f5490085f Wed Feb 3 09:43:00 2021 -0500
    add scaRNA to small non-coding category; remove use of py2/py3 compat function
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    4cc8edf8befc1461287379ed880a8bce5d9198fd Wed Feb 3 09:48:56 2021 -0500
    vault RNAs should be categorized a small-non-coding
• src/hg/makeDb/schema/all.joiner
  • lines changed 7, context: html, text, full: html, text
    78173ba6a8a9e90fda4863cdf2712708ca7d7ea3 Thu Feb 4 10:53:09 2021 -0800
    adding rules for rn7 refs #26682
• src/hg/makeDb/trackDb/human/cloneEnd.trackDb.ra
  • lines changed 48, context: html, text, full: html, text
    e9ce87fb66d90958cbbdfdbec1a1a3c4556f0239 Thu Feb 4 09:58:23 2021 -0800
    NCBI ClonDB url is obsolete refs #21948
• src/hg/makeDb/trackDb/human/exomeProbesets.html
  • lines changed 17, context: html, text, full: html, text
    8143fc04dcf6eabe44a2ef8be2ba0f11223d3ddf Tue Feb 2 16:42:53 2021 -0800
    Modifying display and html for exon track refs #24598
• src/hg/makeDb/trackDb/human/hg19/exomeProbesets.ra
  • lines changed 40, context: html, text, full: html, text
    8143fc04dcf6eabe44a2ef8be2ba0f11223d3ddf Tue Feb 2 16:42:53 2021 -0800
    Modifying display and html for exon track refs #24598
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    7f2adb50075700a75c0d0615240a650be74f254e Tue Feb 2 17:32:29 2021 -0800
    Releasing exomeProbesets track refs #24598
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    b70a4824b82f364ffc899804251592d770a4e0fc Wed Feb 3 15:32:43 2021 -0800
    After reverting git * of file, I am re-committing the ones I wanted refs #24598
• src/hg/makeDb/trackDb/human/hg19/platinumGenomes.ra
  • lines changed 6, context: html, text, full: html, text
    5d95dae082de3552c5e6a92ff98e32941c7571d4 Fri Feb 5 10:29:06 2021 -0800
    Committing VCF filter removal where data doesn't exist or isn't useful refs @ 25902
• src/hg/makeDb/trackDb/human/hg19/targetScanMiRnaSites.html
  • lines changed 82, context: html, text, full: html, text
    0fec5d40d37c1de7de4e1f4f28b09068d239ca68 Wed Feb 3 11:58:47 2021 -0800
    Add description page for supertrack, tweak titles. refs #26287
• src/hg/makeDb/trackDb/human/hg19/targetScanMiRnaSitesV72.html
  • lines changed 36, context: html, text, full: html, text
    24d7ed1ccebfd40ff73b3f598c0a857a28df0613 Wed Feb 3 10:11:10 2021 -0800
    Add color legend, tweak wording of description page. refs #26287
• src/hg/makeDb/trackDb/human/hg19/trackDb.denisova.ra
  • lines changed 12, context: html, text, full: html, text
    5d95dae082de3552c5e6a92ff98e32941c7571d4 Fri Feb 5 10:29:06 2021 -0800
    Committing VCF filter removal where data doesn't exist or isn't useful refs @ 25902
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    7f2adb50075700a75c0d0615240a650be74f254e Tue Feb 2 17:32:29 2021 -0800
    Releasing exomeProbesets track refs #24598
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    b32e3644dba8b2f7a3042766d6af6189d58fbe62 Wed Feb 3 11:00:37 2021 -0800
    Repackage TargetScan tracks in a supertrack, with addition of update. refs #26287
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    0fec5d40d37c1de7de4e1f4f28b09068d239ca68 Wed Feb 3 11:58:47 2021 -0800
    Add description page for supertrack, tweak titles. refs #26287
  • lines changed 2, context: html, text, full: html, text
    5d95dae082de3552c5e6a92ff98e32941c7571d4 Fri Feb 5 10:29:06 2021 -0800
    Committing VCF filter removal where data doesn't exist or isn't useful refs @ 25902
• src/hg/makeDb/trackDb/human/hg38/exomeProbesets.ra
  • lines changed 19, context: html, text, full: html, text
    8143fc04dcf6eabe44a2ef8be2ba0f11223d3ddf Tue Feb 2 16:42:53 2021 -0800
    Modifying display and html for exon track refs #24598
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    b70a4824b82f364ffc899804251592d770a4e0fc Wed Feb 3 15:32:43 2021 -0800
    After reverting git * of file, I am re-committing the ones I wanted refs #24598
• src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra
  • lines changed 28, context: html, text, full: html, text
    cd1c11ae2a758a6c3a8902472a3017f35bd85220 Sat Feb 6 12:15:53 2021 -0800
    tweaks to gencode V36
• src/hg/makeDb/trackDb/human/hg38/platinumGenomes.ra
  • lines changed 8, context: html, text, full: html, text
    5d95dae082de3552c5e6a92ff98e32941c7571d4 Fri Feb 5 10:29:06 2021 -0800
    Committing VCF filter removal where data doesn't exist or isn't useful refs @ 25902
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    7f2adb50075700a75c0d0615240a650be74f254e Tue Feb 2 17:32:29 2021 -0800
    Releasing exomeProbesets track refs #24598
• src/hg/makeDb/trackDb/human/trackDb.clinGen.ra
  • lines changed 2, context: html, text, full: html, text
    16afe7713146d5d53a73884e86cb282f9451bcb8 Fri Feb 5 10:56:58 2021 -0800
    Expanding linkouts for clinGen dosage tracks to PMID4-6 in response to them adding 3 new fields to the file, no RM
• src/hg/makeDb/trackDb/makefile
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    fc0e57ce770bea86faa7e4f6b4c83197d335257b Wed Feb 3 16:25:45 2021 -0800
    initial files for rn7 refs #26682
• src/hg/makeDb/trackDb/mouse/cloneEnd.trackDb.ra
  • lines changed 26, context: html, text, full: html, text
    e9ce87fb66d90958cbbdfdbec1a1a3c4556f0239 Thu Feb 4 09:58:23 2021 -0800
    NCBI ClonDB url is obsolete refs #21948
• src/hg/makeDb/trackDb/rat/rn6/cloneEnd.trackDb.ra
  • lines changed 12, context: html, text, full: html, text
    e9ce87fb66d90958cbbdfdbec1a1a3c4556f0239 Thu Feb 4 09:58:23 2021 -0800
    NCBI ClonDB url is obsolete refs #21948
• src/hg/makeDb/trackDb/rat/rn7/description.html
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    fc0e57ce770bea86faa7e4f6b4c83197d335257b Wed Feb 3 16:25:45 2021 -0800
    initial files for rn7 refs #26682
• src/hg/makeDb/trackDb/rat/rn7/gap.html
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    fc0e57ce770bea86faa7e4f6b4c83197d335257b Wed Feb 3 16:25:45 2021 -0800
    initial files for rn7 refs #26682
• src/hg/makeDb/trackDb/rat/rn7/gold.html
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    fc0e57ce770bea86faa7e4f6b4c83197d335257b Wed Feb 3 16:25:45 2021 -0800
    initial files for rn7 refs #26682
• src/hg/makeDb/trackDb/rat/rn7/trackDb.ra
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    fc0e57ce770bea86faa7e4f6b4c83197d335257b Wed Feb 3 16:25:45 2021 -0800
    initial files for rn7 refs #26682
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    9cc7ce1af6119158545ad718793c5066ee69249c Wed Feb 3 16:35:45 2021 -0800
    adding search rule for gold/assembly track refs #26682
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    476457cc05d68579e4502302dd731225d068b7d2 Thu Feb 4 10:37:16 2021 -0800
    addin NCBI RefSeq composite track refs #26682
• src/hg/makeDb/trackDb/uniprot.html
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    3091ba51499288c02b9bafb87b6ae937320c6344 Mon Feb 1 08:20:52 2021 -0800
    adding note about what the uniprot other track contains to uniprot docs, refs #26889
• src/hg/makeDb/trackDb/virus/wuhCor1/abEscape.ra
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    bb639c786b906e44398c2ae7352a99e13aee7197 Mon Feb 1 12:47:50 2021 -0800
    Adding PennantIcons for announcement refs #28683
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    3a653336f104ce1c37dbdcbe18a8068b56c353ff Mon Feb 1 12:49:18 2021 -0800
    Adding PennantIcons for announcement v2 refs #28683
• src/hg/makeDb/trackDb/virus/wuhCor1/trackDb.ra
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    bb639c786b906e44398c2ae7352a99e13aee7197 Mon Feb 1 12:47:50 2021 -0800
    Adding PennantIcons for announcement refs #28683
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    946c1f741bc2a3d4fd518a92af5adf2f413d6335 Mon Feb 1 12:54:22 2021 -0800
    Adding PennantIcons for announcement v3 refs #28683
• src/hg/utils/automation/asmHubChainNetTrackDb.sh
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    7c10410f740fc07c6ee0a49cdad69fca9b3cdbaf Fri Feb 5 15:21:49 2021 -0800
    beginning to add chainNet tracks to assembly hubs refs #26815
• src/hg/utils/otto/clinGen/clinGenDosageHaplo.as
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    056e469252385766eda11785f44b081af9c69fa9 Fri Feb 5 11:04:27 2021 -0800
    Adjusting clinGen otto script to account for the 6 new fields added to the files, and adding the .as files to the git repo, no RM
• src/hg/utils/otto/clinGen/clinGenDosageTriplo.as
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    056e469252385766eda11785f44b081af9c69fa9 Fri Feb 5 11:04:27 2021 -0800
    Adjusting clinGen otto script to account for the 6 new fields added to the files, and adding the .as files to the git repo, no RM
• src/hg/utils/otto/clinGen/makeDosage.sh
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    056e469252385766eda11785f44b081af9c69fa9 Fri Feb 5 11:04:27 2021 -0800
    Adjusting clinGen otto script to account for the 6 new fields added to the files, and adding the .as files to the git repo, no RM
• src/hg/utils/otto/clinGen/processClinGenDosage.py
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    056e469252385766eda11785f44b081af9c69fa9 Fri Feb 5 11:04:27 2021 -0800
    Adjusting clinGen otto script to account for the 6 new fields added to the files, and adding the .as files to the git repo, no RM
• src/hg/utils/otto/sarscov2phylo/bioSampleTextToTab.pl
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    e616b1ad06be9b542979d2224de81fa26a355ada Tue Feb 2 11:36:05 2021 -0800
    Loosen up regex for BioSample attributes with stray quotes.
• src/hg/utils/otto/sarscov2phylo/gbMetadataAddBioSample.pl
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    6ab4a88e1c9d7de5e15ecc3a6699c53bb4c60935 Wed Feb 3 13:45:17 2021 -0800
    Use Date::Parse to handle more data formats that are finding their way into BioSample.
• src/inc/srcVersion.h
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    22aeab2a8676808f9b2ec675b41c2946ef2800f6 Mon Feb 8 12:10:32 2021 -0800
    New version number v410
• src/lib/vcf.c
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    38caeb2a3929a04b5e1cb518dd74e60eba6a9ccf Wed Feb 3 19:10:41 2021 -0800
    Don't hardcode VCF_MAX_COLUMNS -- count the number of actual columns in header.
• src/product/README.QuickStart
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    3091ba51499288c02b9bafb87b6ae937320c6344 Mon Feb 1 08:20:52 2021 -0800
    adding note about what the uniprot other track contains to uniprot docs, refs #26889
• src/product/README.debug
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    3091ba51499288c02b9bafb87b6ae937320c6344 Mon Feb 1 08:20:52 2021 -0800
    adding note about what the uniprot other track contains to uniprot docs, refs #26889
• src/product/README.local.git.source
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    3091ba51499288c02b9bafb87b6ae937320c6344 Mon Feb 1 08:20:52 2021 -0800
    adding note about what the uniprot other track contains to uniprot docs, refs #26889
• src/product/installer/browserSetup.sh
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    c40f63d870ea8956adee5df417957f799a4673cd Tue Feb 2 09:02:28 2021 -0800
    fixing a typo in gbic, email from Lou, no redmine
• src/product/mirrorDocs/makefile
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    3a5adfa650b4232f827f2ef2a28b113189aeddd6 Mon Feb 8 05:17:22 2021 -0800
    makeing mirrorManual make a bit easier to use, refs #26934
• src/product/mirrorManual.txt
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    e68feeac1d9b49e6792edb0d6665f961c14572d6 Mon Feb 8 05:02:32 2021 -0800
    fixing the mirrorManual moving the git clone step before the installation step, #26934
• src/utils/chromToUcsc/chromToUcsc
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    a3f24a9e80f42401d17724d6b88e6a9df1c24f24 Tue Feb 2 06:39:57 2021 -0800
    changes after code review, refs #26903
• src/utils/qa/weeklybld/buildEnv.csh
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    487c950dea19e6a6f15e9337a13d5656a1f017e0 Mon Feb 8 12:09:29 2021 -0800
    v410 final build, refs #26867

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