All File Changes

v430_preview to v430_preview2 (2022-04-11 to 2022-04-18) v430

• src/hg/hgCustom/hgCustom.c
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    75947df74b1d3b4e6e0973704cce6482d1ee814f Fri Apr 15 11:34:48 2022 -0700
    Fixing broken link; hic docs are now on a separate page - no ticket
• src/hg/hgGateway/hgGateway.html
  • lines changed 3, context: html, text, full: html, text
    07c28fb2800fd941ecad70dc3731ce8161e65ed8 Fri Apr 8 09:15:17 2022 -0700
    reversing gnomad colors after user feedback, refs #29206
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 2, context: html, text, full: html, text
    e199edebab9458a3b535bb2d0e32c52167d8fdae Fri Apr 15 14:09:59 2022 -0700
    Adding pack/squish to hic tracks, plus interaction distance filters. refs #29280
• src/hg/hgTracks/hicTrack.c
  • lines changed 59, context: html, text, full: html, text
    e199edebab9458a3b535bb2d0e32c52167d8fdae Fri Apr 15 14:09:59 2022 -0700
    Adding pack/squish to hic tracks, plus interaction distance filters. refs #29280
• src/hg/hgTracks/simpleTracks.c
  • lines changed 1, context: html, text, full: html, text
    e199edebab9458a3b535bb2d0e32c52167d8fdae Fri Apr 15 14:09:59 2022 -0700
    Adding pack/squish to hic tracks, plus interaction distance filters. refs #29280
• src/hg/hgTracks/snakeTrack.c
  • lines changed 10, context: html, text, full: html, text
    90e23a5e6fa454182c6abc69985c613a964d30b5 Tue Apr 12 15:58:48 2022 -0700
    add chromAlias support to HAL snakes
• src/hg/htdocs/FAQ/FAQblat.html
  • lines changed 1, context: html, text, full: html, text
    aa9ae872827329ab53c58e8ed41adeeac17021be Fri Apr 15 14:01:49 2022 -0700
    Fixing translated RNA, feedback from CR refs #29215
• src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
  • lines changed 4, context: html, text, full: html, text
    7ecfde19617a3f69ca58f6e42630f10d756457e8 Thu Apr 14 09:32:15 2022 -0700
    Adding a sentence about how the url trackDb variable for bigBed based tracks now supports $<fieldName> substitutions.
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 17, context: html, text, full: html, text
    f3d60aa423046c2dd0edfafecb845fe5ff4e450e Mon Apr 11 13:31:24 2022 -0700
    Touching up the T2T announcement, refs #29203
  • lines changed 2, context: html, text, full: html, text
    0fbae462668c02e6d669f8687043cd5dd8a4f5fa Tue Apr 12 11:02:57 2022 -0700
    Staging T2T announcement refs #29203
  • lines changed 1, context: html, text, full: html, text
    54eaee0b6465161ede3898caaf10c5929a06b567 Tue Apr 12 16:07:55 2022 -0700
    cosmetic tweaks and a grammar fix (that to who)
  • lines changed 66, context: html, text, full: html, text
    ee94193b5dde0c82d298205d0976617f70759a79 Wed Apr 13 17:00:58 2022 -0700
    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
  • lines changed 1, context: html, text, full: html, text
    3156052e96ed19457d1930d202568d1586803ceb Thu Apr 14 15:00:29 2022 -0700
    Missing quot from feedback from CR refs #29246
• src/hg/htdocs/images/singleCell/singleCellMerged.png
  • lines changed 0, context: html, text, full: html, text
    ee94193b5dde0c82d298205d0976617f70759a79 Wed Apr 13 17:00:58 2022 -0700
    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/htdocs/images/t2tGenomesMenu.png
  • lines changed 0, context: html, text, full: html, text
    61bcabf68f01f975774a5d8957cda1c6a56b19eb Tue Apr 12 15:33:16 2022 -0700
    Updating T2T image to new nomenlature T2T-CHM13, refs #29203
• src/hg/htdocs/inc/gbPageStartHardcoded.html
  • lines changed 1, context: html, text, full: html, text
    d0f0db5748c5d818a4eeeffe1e92be377436d02a Tue Apr 12 15:18:06 2022 -0700
    Changing link text for refs #29202
• src/hg/htdocs/inc/globalNavBar.inc
  • lines changed 1, context: html, text, full: html, text
    d0f0db5748c5d818a4eeeffe1e92be377436d02a Tue Apr 12 15:18:06 2022 -0700
    Changing link text for refs #29202
• src/hg/htdocs/indexNews.html
  • lines changed 8, context: html, text, full: html, text
    0fbae462668c02e6d669f8687043cd5dd8a4f5fa Tue Apr 12 11:02:57 2022 -0700
    Staging T2T announcement refs #29203
  • lines changed 8, context: html, text, full: html, text
    ee94193b5dde0c82d298205d0976617f70759a79 Wed Apr 13 17:00:58 2022 -0700
    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/htdocs/style/makefile
  • lines changed 3, context: html, text, full: html, text
    c1085f7ea696f791fc1d258dd6a6f5f3b384a60d Tue Apr 12 09:46:32 2022 -0700
    adding gar.css to the build refs #28930
• src/hg/htdocs/training/coming.html
  • lines changed 88, context: html, text, full: html, text
    a9e3f018163fa44f30a77778c95207a9b4a6040f Wed Apr 13 20:17:36 2022 -0700
    pulled out upcoming trainings into separate include file to support Lou and his new index page
  • lines changed 2, context: html, text, full: html, text
    2d4e48c7f6462dc8d5861c26de41490b44c1dbb2 Thu Apr 14 13:09:11 2022 -0700
    moved a tag from included into outer file per request from Lou
• src/hg/htdocs/training/index.html
  • lines changed 94, context: html, text, full: html, text
    a9e3f018163fa44f30a77778c95207a9b4a6040f Wed Apr 13 20:17:36 2022 -0700
    pulled out upcoming trainings into separate include file to support Lou and his new index page
  • lines changed 2, context: html, text, full: html, text
    2d4e48c7f6462dc8d5861c26de41490b44c1dbb2 Thu Apr 14 13:09:11 2022 -0700
    moved a tag from included into outer file per request from Lou
• src/hg/inc/hicUi.h
  • lines changed 12, context: html, text, full: html, text
    e199edebab9458a3b535bb2d0e32c52167d8fdae Fri Apr 15 14:09:59 2022 -0700
    Adding pack/squish to hic tracks, plus interaction distance filters. refs #29280
• src/hg/lib/hicUi.c
  • lines changed 42, context: html, text, full: html, text
    e199edebab9458a3b535bb2d0e32c52167d8fdae Fri Apr 15 14:09:59 2022 -0700
    Adding pack/squish to hic tracks, plus interaction distance filters. refs #29280
  • lines changed 10, context: html, text, full: html, text
    1d677ef02ee511f17c526869d9d058158771f6dc Fri Apr 15 17:15:05 2022 -0700
    Enforcing non-negative values for hicDistanceMin and hicDistanceMax, refs #29280
• src/hg/lib/trackDbCustom.c
  • lines changed 1, context: html, text, full: html, text
    e199edebab9458a3b535bb2d0e32c52167d8fdae Fri Apr 15 14:09:59 2022 -0700
    Adding pack/squish to hic tracks, plus interaction distance filters. refs #29280
• src/hg/makeDb/doc/asmHubs/master.run.list
  • lines changed 1, context: html, text, full: html, text
    abb1d7552fcaa56d939b597e72ed53cbb32f8ab9 Tue Apr 12 17:49:49 2022 -0700
    catch up a forgotten runBuild command for GCF_000009045.1_ASM904v1 Bacillus_subtilis no redmine
  • lines changed 2, context: html, text, full: html, text
    e45829e1d7444fd1ffee63a7d0840c81d0e6a619 Tue Apr 12 17:53:05 2022 -0700
    catch up a forgotten runBuild command for GCF_000850965.1_ViralMultiSegProj14847 La_Crosse_virus no redmine
  • lines changed 2, context: html, text, full: html, text
    8b151f945031d835c88eb5d2928d0c145c07b058 Tue Apr 12 18:17:10 2022 -0700
    fixup edit errors no redmine
• src/hg/makeDb/doc/asmHubs/mkAsmStats.pl
  • lines changed 36, context: html, text, full: html, text
    ede2fd190d25f754238a2f78b25249d400b596a3 Thu Apr 14 22:10:55 2022 -0700
    fixup the index creation to stuff in the "promoted" hub that is no longer in the tsv listings refs #29259
• src/hg/makeDb/doc/asmHubs/mkHubIndex.pl
  • lines changed 39, context: html, text, full: html, text
    ede2fd190d25f754238a2f78b25249d400b596a3 Thu Apr 14 22:10:55 2022 -0700
    fixup the index creation to stuff in the "promoted" hub that is no longer in the tsv listings refs #29259
• src/hg/makeDb/doc/asmHubs/trackData.pl
  • lines changed 36, context: html, text, full: html, text
    ede2fd190d25f754238a2f78b25249d400b596a3 Thu Apr 14 22:10:55 2022 -0700
    fixup the index creation to stuff in the "promoted" hub that is no longer in the tsv listings refs #29259
• src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.assembly.html
  • lines changed 33, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.augustus.html
  • lines changed 106, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.chainNet.html
  • lines changed 157, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
  • lines changed 54, context: html, text, full: html, text
    366e85291a190f6b6a3ac820282132e972375ac8 Wed Apr 13 12:35:45 2022 -0700
    improved text for the chainNet description and adjusting the visibilities of the chainNet tracks refs #29203
• src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.cpgIslands.html
  • lines changed 78, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.description.html
  • lines changed 130, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.gc5Base.html
  • lines changed 21, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.repeatMasker.html
  • lines changed 149, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.simpleRepeat.html
  • lines changed 48, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.tanDups.html
  • lines changed 101, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.windowMasker.html
  • lines changed 38, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/html/GCA_009914755.4_T2T-CHM13v2.0.xenoRefGene.html
  • lines changed 88, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/hub.txt
  • lines changed 618, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
  • lines changed 55, context: html, text, full: html, text
    c44506b985f933067aed6688d2470dd7d577833c Thu Apr 14 12:20:08 2022 -0700
    use hubCheck -checkSettings and remove invalid settings
  • lines changed 616, context: html, text, full: html, text
    458125d8cf4fa7b339c5f3cad7eda29611ad8007 Thu Apr 14 18:11:02 2022 -0700
    this hub.txt does NOT belong in the source tree no redmine
• src/hg/makeDb/doc/chm13v2.0/hub/GCA_009914755.4_T2T-CHM13v2.0.chromAlias.txt
  • lines changed 26, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/hub/GCA_009914755.4_T2T-CHM13v2.0.faSize.txt
  • lines changed 6, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/hub/GCA_009914755.4_T2T-CHM13v2.0.genomes.txt
  • lines changed 20, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
  • lines changed 2, context: html, text, full: html, text
    94e7b2f43c0988226083bf17f348f1fa753b69ab Wed Apr 13 02:50:36 2022 -0700
    small tweaks to CHM13, refs #29259
  • lines changed 1, context: html, text, full: html, text
    83a29e3cd4741a6a2a0a112eb453d12b5971de76 Wed Apr 13 03:01:42 2022 -0700
    change default pos of CHM13 to ABO, refs #29259
• src/hg/makeDb/doc/chm13v2.0/hub/GCA_009914755.4_T2T-CHM13v2.0.groups.txt
  • lines changed 39, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/hub/GCA_009914755.4_T2T-CHM13v2.0.hub.txt
  • lines changed 6, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
  • lines changed 2, context: html, text, full: html, text
    94e7b2f43c0988226083bf17f348f1fa753b69ab Wed Apr 13 02:50:36 2022 -0700
    small tweaks to CHM13, refs #29259
• src/hg/makeDb/doc/chm13v2.0/hub/GCA_009914755.4_T2T-CHM13v2.0_assembly_report.txt
  • lines changed 50, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
• src/hg/makeDb/doc/chm13v2.0/makefile
  • lines changed 51, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
  • lines changed 58, context: html, text, full: html, text
    5f4eafca0ff4189014f9a214ef0ddbf99ccb6a11 Tue Apr 12 14:14:58 2022 -0700
    now with rsync pushing refs #29203
  • lines changed 5, context: html, text, full: html, text
    8aa1fab06fae584c61a76fa44ef8774856a69000 Tue Apr 12 14:55:41 2022 -0700
    add verifyLogin to prove qateam at hgdownload will work refs #29203
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    46688a248b4634380d5e34ee64b975665a13f53f Tue Apr 12 18:36:24 2022 -0700
    do not need the delete option on the rsync refs #29259
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    c44506b985f933067aed6688d2470dd7d577833c Thu Apr 14 12:20:08 2022 -0700
    use hubCheck -checkSettings and remove invalid settings
  • lines changed 1, context: html, text, full: html, text
    4947432ba44023db07f1dd6be03d39756716aeb1 Thu Apr 14 18:13:09 2022 -0700
    do not leave temporary hub.txt around for garbage no redmine
  • lines changed 29, context: html, text, full: html, text
    b4d1dfac893a568f669c7f59ab1022047ce50bea Thu Apr 14 20:02:45 2022 -0700
    remove useless list of files and better explain what is happening refs #29203
• src/hg/makeDb/doc/chm13v2.0/trackDb/GCA_009914755.4_T2T-CHM13v2.0.trackDb.txt
  • lines changed 591, context: html, text, full: html, text
    b1cabf573dc930b78de2f4e5a369c68f7655d9ba Mon Apr 11 15:36:26 2022 -0700
    initial set of files for chm13v2.0 hub construction refs #29203
  • lines changed 4, context: html, text, full: html, text
    94e7b2f43c0988226083bf17f348f1fa753b69ab Wed Apr 13 02:50:36 2022 -0700
    small tweaks to CHM13, refs #29259
  • lines changed 43, context: html, text, full: html, text
    366e85291a190f6b6a3ac820282132e972375ac8 Wed Apr 13 12:35:45 2022 -0700
    improved text for the chainNet description and adjusting the visibilities of the chainNet tracks refs #29203
  • lines changed 9, context: html, text, full: html, text
    9aea43b079868a83ecf98a717ba26369f0038914 Wed Apr 13 15:21:40 2022 -0700
    reset track default visibilities refs #29259
  • lines changed 2, context: html, text, full: html, text
    c44506b985f933067aed6688d2470dd7d577833c Thu Apr 14 12:20:08 2022 -0700
    use hubCheck -checkSettings and remove invalid settings
• src/hg/makeDb/doc/chm13v2.0userData/build.txt
  • lines changed 326, context: html, text, full: html, text
    6e38471f9e03b95d1a26a10a4e71616b7f2e6837 Mon Apr 11 17:31:15 2022 -0700
    renamed ulgy chr13 directory to keep Hiram sane
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    5148aa7d55ecbad1137ae3cd4bb0c85b67e8fed3 Thu Apr 14 12:13:05 2022 -0700
    added cat/liftoff rna and protein fastas
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    890098d958d7df3a643b6a0b3589b1bfe4b7f6a0 Sun Apr 17 22:37:36 2022 -0700
    added microsatellites
• src/hg/makeDb/doc/chm13v2.0userData/doc/chm13v2.0_CytoBandMapping.readme.txt
  • lines changed 31, context: html, text, full: html, text
    6e38471f9e03b95d1a26a10a4e71616b7f2e6837 Mon Apr 11 17:31:15 2022 -0700
    renamed ulgy chr13 directory to keep Hiram sane
• src/hg/makeDb/doc/chm13v2.0userData/doc/chm13v2.0_CytoBandMapping.tsv
  • lines changed 863, context: html, text, full: html, text
    6e38471f9e03b95d1a26a10a4e71616b7f2e6837 Mon Apr 11 17:31:15 2022 -0700
    renamed ulgy chr13 directory to keep Hiram sane
• src/hg/makeDb/doc/chm13v2.0userData/html/catLiftOffGenesV1.html
  • lines changed 104, context: html, text, full: html, text
    6e38471f9e03b95d1a26a10a4e71616b7f2e6837 Mon Apr 11 17:31:15 2022 -0700
    renamed ulgy chr13 directory to keep Hiram sane
• src/hg/makeDb/doc/chm13v2.0userData/html/censat.html
  • lines changed 34, context: html, text, full: html, text
    6e38471f9e03b95d1a26a10a4e71616b7f2e6837 Mon Apr 11 17:31:15 2022 -0700
    renamed ulgy chr13 directory to keep Hiram sane
• src/hg/makeDb/doc/chm13v2.0userData/html/clinVar20220313.html
  • lines changed 14, context: html, text, full: html, text
    6e38471f9e03b95d1a26a10a4e71616b7f2e6837 Mon Apr 11 17:31:15 2022 -0700
    renamed ulgy chr13 directory to keep Hiram sane
• src/hg/makeDb/doc/chm13v2.0userData/html/dbSNP155.html
  • lines changed 14, context: html, text, full: html, text
    6e38471f9e03b95d1a26a10a4e71616b7f2e6837 Mon Apr 11 17:31:15 2022 -0700
    renamed ulgy chr13 directory to keep Hiram sane
• src/hg/makeDb/doc/chm13v2.0userData/html/gwasSNPs2022-03-08.html
  • lines changed 14, context: html, text, full: html, text
    6e38471f9e03b95d1a26a10a4e71616b7f2e6837 Mon Apr 11 17:31:15 2022 -0700
    renamed ulgy chr13 directory to keep Hiram sane
• src/hg/makeDb/doc/chm13v2.0userData/html/hgCactus.html
  • lines changed 44, context: html, text, full: html, text
    6e38471f9e03b95d1a26a10a4e71616b7f2e6837 Mon Apr 11 17:31:15 2022 -0700
    renamed ulgy chr13 directory to keep Hiram sane
• src/hg/makeDb/doc/chm13v2.0userData/html/hgLiftOver.html
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    890098d958d7df3a643b6a0b3589b1bfe4b7f6a0 Sun Apr 17 22:37:36 2022 -0700
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    5148aa7d55ecbad1137ae3cd4bb0c85b67e8fed3 Thu Apr 14 12:13:05 2022 -0700
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    c44506b985f933067aed6688d2470dd7d577833c Thu Apr 14 12:20:08 2022 -0700
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    890098d958d7df3a643b6a0b3589b1bfe4b7f6a0 Sun Apr 17 22:37:36 2022 -0700
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    8102c8c2b15180f3e48534af65f117ac467c4505 Thu Apr 14 16:00:15 2022 -0700
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
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    c164fcc4428454a539e9226d343b2f7f6373ecce Mon Apr 11 13:26:42 2022 -0700
    Initial makedoc for single cell merged track on hg38, plus update to trackDb entry, refs #28062
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
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    8258374ba1d92681de323aee7bd380495044378e Tue Apr 12 18:15:55 2022 -0700
    the assembly GCA_009914755.4_T2T-CHM13v2.0 has been turned into a static set of contents in the source tree no longer automatic here refs #29259
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
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    24491145c40ff484b4e7521122317876d8238088 Fri Apr 15 15:12:56 2022 -0700
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
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    b260fe1f52db8c7e5362d4f9db3770409c24e197 Thu Apr 14 18:57:29 2022 -0700
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    d4236ef271897286329784fc094582fec9b5b4fe Fri Apr 15 13:49:36 2022 -0700
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
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    24491145c40ff484b4e7521122317876d8238088 Fri Apr 15 15:12:56 2022 -0700
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
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• src/hg/makeDb/trackDb/human/hg38/bloodHao.ra
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    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/chm13LiftOver.html
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    d4236ef271897286329784fc094582fec9b5b4fe Fri Apr 15 13:49:36 2022 -0700
    Feedback from CR, refs #29215
• src/hg/makeDb/trackDb/human/hg38/colonWang.ra
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    c164fcc4428454a539e9226d343b2f7f6373ecce Mon Apr 11 13:26:42 2022 -0700
    Initial makedoc for single cell merged track on hg38, plus update to trackDb entry, refs #28062
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    ee94193b5dde0c82d298205d0976617f70759a79 Wed Apr 13 17:00:58 2022 -0700
    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/cortexVelmeshev.ra
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    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
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    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/gnomad.ra
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    07c28fb2800fd941ecad70dc3731ce8161e65ed8 Fri Apr 8 09:15:17 2022 -0700
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• src/hg/makeDb/trackDb/human/hg38/heartCellAtlas.ra
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    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/ileumWang.ra
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    c164fcc4428454a539e9226d343b2f7f6373ecce Mon Apr 11 13:26:42 2022 -0700
    Initial makedoc for single cell merged track on hg38, plus update to trackDb entry, refs #28062
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    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/liverMacParland.ra
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    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/lungTravaglini2020.ra
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• src/hg/makeDb/trackDb/human/hg38/muscleDeMicheli.ra
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    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/pancreasBaron.ra
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    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/placentaVentoTormo.ra
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    ee94193b5dde0c82d298205d0976617f70759a79 Wed Apr 13 17:00:58 2022 -0700
    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/reMap.ra
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
    making ReMap hub into native track, refs #28960
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    24491145c40ff484b4e7521122317876d8238088 Fri Apr 15 15:12:56 2022 -0700
    Adding Benoit suggestions to the ReMap track, refs #28960
• src/hg/makeDb/trackDb/human/hg38/rectumWang.ra
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    c164fcc4428454a539e9226d343b2f7f6373ecce Mon Apr 11 13:26:42 2022 -0700
    Initial makedoc for single cell merged track on hg38, plus update to trackDb entry, refs #28062
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    ee94193b5dde0c82d298205d0976617f70759a79 Wed Apr 13 17:00:58 2022 -0700
    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/singleCellMerged.ra
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    c164fcc4428454a539e9226d343b2f7f6373ecce Mon Apr 11 13:26:42 2022 -0700
    Initial makedoc for single cell merged track on hg38, plus update to trackDb entry, refs #28062
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    ee94193b5dde0c82d298205d0976617f70759a79 Wed Apr 13 17:00:58 2022 -0700
    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/skinSoleBoldo.ra
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    ee94193b5dde0c82d298205d0976617f70759a79 Wed Apr 13 17:00:58 2022 -0700
    Removing pennants for single cell tracks, adding penant to single cell merged, and adding a placeholder news post for the release of the single cell merged track, refs #28062
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
    making ReMap hub into native track, refs #28960
• src/hg/makeDb/trackDb/human/reMap.html
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
    making ReMap hub into native track, refs #28960
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    24491145c40ff484b4e7521122317876d8238088 Fri Apr 15 15:12:56 2022 -0700
    Adding Benoit suggestions to the ReMap track, refs #28960
• src/hg/makeDb/trackDb/human/reMap2022.html
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
    making ReMap hub into native track, refs #28960
• src/hg/makeDb/trackDb/human/trackDb.ra
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    a0357837e9b00602f43a88faef53a6f3c26ff50c Fri Apr 15 08:16:49 2022 -0700
    putting genomenom to density mode, no redmine
• src/hg/makeDb/trackDb/mouse/mm10/reMap.ra
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
    making ReMap hub into native track, refs #28960
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    24491145c40ff484b4e7521122317876d8238088 Fri Apr 15 15:12:56 2022 -0700
    Adding Benoit suggestions to the ReMap track, refs #28960
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
    making ReMap hub into native track, refs #28960
• src/hg/makeDb/trackDb/mouse/mm39/reMap.ra
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
    making ReMap hub into native track, refs #28960
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    24491145c40ff484b4e7521122317876d8238088 Fri Apr 15 15:12:56 2022 -0700
    Adding Benoit suggestions to the ReMap track, refs #28960
• src/hg/makeDb/trackDb/mouse/mm39/trackDb.ra
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
    making ReMap hub into native track, refs #28960
• src/hg/makeDb/trackDb/mouse/reMap.html
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    6b1648806fc1de0da4b16bb23f51e0fd52065ef7 Wed Apr 13 13:12:33 2022 -0700
    making ReMap hub into native track, refs #28960
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    24491145c40ff484b4e7521122317876d8238088 Fri Apr 15 15:12:56 2022 -0700
    Adding Benoit suggestions to the ReMap track, refs #28960
• src/hg/makeDb/trackDb/tagTypes.tab
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    efb0ef00c7d06d1eb805f4fc6619342344c7c715 Fri Apr 15 14:11:11 2022 -0700
    Adding tdb variables for default hic interaction distance filters, refs #29280
• src/hg/makeDb/trackDb/virus/wuhCor1/variantMuts.ra
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    07c28fb2800fd941ecad70dc3731ce8161e65ed8 Fri Apr 8 09:15:17 2022 -0700
    reversing gnomad colors after user feedback, refs #29206
• src/hg/utils/automation/asmHubChainNet.pl
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    70e26b4a27b71aa4844ae0a5aa995e732f8b17e4 Mon Apr 11 21:51:12 2022 -0700
    correct finding queryId report.txt file refs #29203
• src/hg/utils/automation/asmHubChainNetTrackDb.pl
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    7d20b40e8b2cd56b6e37c86f9af31a8d28f24907 Mon Apr 11 11:21:30 2022 -0700
    eliminate obsolete noInherit setting refs #29203
• src/hg/utils/automation/asmHubChainNetTrackDb.sh
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    7d20b40e8b2cd56b6e37c86f9af31a8d28f24907 Mon Apr 11 11:21:30 2022 -0700
    eliminate obsolete noInherit setting refs #29203
• src/hg/utils/automation/asmHubTrackDb.sh
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    c0f24814891eec0c1c45a0c9d341ae086fa548c7 Mon Apr 11 10:18:25 2022 -0700
    bogus debugging messages removed refs #29203
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    7d20b40e8b2cd56b6e37c86f9af31a8d28f24907 Mon Apr 11 11:21:30 2022 -0700
    eliminate obsolete noInherit setting refs #29203
• src/hg/utils/automation/doAssemblyHub.pl
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    c5168394dbf70b3d5712c2b613d29e710c5fb23d Mon Apr 11 20:19:57 2022 -0700
    no need for species in gateway page refs #29203
• src/hg/utils/automation/doBlastzChainNet.pl
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    cae80adef9ad9f897401c1fbe857eba5bb6679f0 Fri Apr 15 19:06:23 2022 -0700
    always user itemsPerSlot=4 on bedToBigBed for bigMaf.as for performance improvement refs #29263
• src/hg/utils/automation/doRecipBest.pl
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    cae80adef9ad9f897401c1fbe857eba5bb6679f0 Fri Apr 15 19:06:23 2022 -0700
    always user itemsPerSlot=4 on bedToBigBed for bigMaf.as for performance improvement refs #29263
• src/utils/qa/weeklybld/buildEnv.csh
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    e0d7c62b83c45be3da1a0bf6ef492ecb97ee0a96 Mon Apr 18 10:03:08 2022 -0700
    v430 preview2, refs #29240

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