File Changes for markd

v415_preview2 to v415_base (2021-05-17 to 2021-05-24) v415

• src/hg/makefile
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/makefile
  • lines changed 6, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/pslSwap.c
  • lines changed 57, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/.gitignore
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/expected/mrnaNoRcTest.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/expected/mrnaTest.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/expected/transTest.psl
  • lines changed 12, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/expected/withSeqNoRcTest.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/expected/withSeqTest.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/input/mrna.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/input/trans.psl
  • lines changed 12, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/input/withSeq.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/makefile
  • lines changed 54, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/makefile
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
  • lines changed 2, context: html, text, full: html, text
    be7a9450777b54bf7a4796f6cb4502b692d4aa86 Thu May 20 09:00:59 2021 -0700
    place were psl tests were executed was missed in the previous commit
• src/hg/utils/pslMap/README
  • lines changed 64, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/makefile
  • lines changed 1, context: html, text, full: html, text
    90032ba9f879592a33cec272f160941f98b9b98d Wed May 19 04:20:59 2021 -0700
    remove dependency on stringify being compiled
  • lines changed 14, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/pslMap.c
  • lines changed 405, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/.gitignore
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/gapBoth.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/kgProt.psl
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMapOver.mapinfo
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMapOver.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMapOverChain.mapping.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMapOverSwap.mapinfo
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMapOverSwap.mapping.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMrnaMap.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMrnaXMap.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/negQChain.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/retroParent.mapinfo
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/retroParent.psl
  • lines changed 4, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/testMapFileWithInQName.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/README
  • lines changed 35, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/gapBothMRna.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/gapBothProtMRna.blast
  • lines changed 218, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/gencode.blocks.qName-psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/gencode.src.psl
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/kgMRna.psl
  • lines changed 22, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/kgProtMRna.blast
  • lines changed 2239, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/mm6ToHg17.chain
  • lines changed 237, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/mm6ToHg17.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/mrnaRefSeq.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/mrnaRefSeqX.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/mrnaToMm6.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/negQ.chain
  • lines changed 632, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/negQ.refSeq.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/parent.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/refSeqGen.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/retro.psl
  • lines changed 4, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/makefile
  • lines changed 107, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/usage.txt
  • lines changed 64, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMapPostChain/makefile
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMapPostChain/pslMapPostChain.c
  • lines changed 323, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMapPostChain/tests/expected/C57B6NJ-1504TransMapTest.psl
  • lines changed 21, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMapPostChain/tests/input/C57B6NJ-1504.transMap-cases.psl
  • lines changed 51, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMapPostChain/tests/makefile
  • lines changed 20, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/makefile
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/pslRc.c
  • lines changed 55, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/tests/expected/mrnaTest.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/tests/expected/transTest.psl
  • lines changed 12, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/tests/expected/withSeqTest.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/tests/makefile
  • lines changed 36, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/userApps/fetchKentSource.sh
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/makefile
  • lines changed 4, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/README
  • lines changed 64, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/makefile
  • lines changed 14, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/pslMap.c
  • lines changed 405, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/.gitignore
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/gapBoth.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/kgProt.psl
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMapOver.mapinfo
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMapOver.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMapOverChain.mapping.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMapOverSwap.mapinfo
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMapOverSwap.mapping.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMrnaMap.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMrnaXMap.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/negQChain.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/retroParent.mapinfo
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/retroParent.psl
  • lines changed 4, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/testMapFileWithInQName.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/README
  • lines changed 35, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/gapBothMRna.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/gapBothProtMRna.blast
  • lines changed 218, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/gencode.blocks.qName-psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/gencode.src.psl
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/kgMRna.psl
  • lines changed 22, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/kgProtMRna.blast
  • lines changed 2239, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/mm6ToHg17.chain
  • lines changed 237, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/mm6ToHg17.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/mrnaRefSeq.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/mrnaRefSeqX.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/mrnaToMm6.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/negQ.chain
  • lines changed 632, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/negQ.refSeq.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/parent.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/refSeqGen.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/retro.psl
  • lines changed 4, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/makefile
  • lines changed 107, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/usage.txt
  • lines changed 64, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMapPostChain/makefile
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMapPostChain/pslMapPostChain.c
  • lines changed 323, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMapPostChain/tests/expected/C57B6NJ-1504TransMapTest.psl
  • lines changed 21, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMapPostChain/tests/input/C57B6NJ-1504.transMap-cases.psl
  • lines changed 51, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMapPostChain/tests/makefile
  • lines changed 20, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/makefile
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/pslRc.c
  • lines changed 55, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/tests/expected/mrnaTest.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/tests/expected/transTest.psl
  • lines changed 12, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/tests/expected/withSeqTest.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/tests/makefile
  • lines changed 36, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/makefile
  • lines changed 6, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/pslSwap.c
  • lines changed 57, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/.gitignore
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/expected/mrnaNoRcTest.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/expected/mrnaTest.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/expected/transTest.psl
  • lines changed 12, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/expected/withSeqNoRcTest.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/expected/withSeqTest.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/input/mrna.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/input/trans.psl
  • lines changed 12, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/input/withSeq.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/makefile
  • lines changed 54, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.