All File Changes

v415_preview2 to v415_base (2021-05-17 to 2021-05-24) v415

• src/hg/hgPhyloPlace/hgPhyloPlace.c
  • lines changed 11, context: html, text, full: html, text
    08ec019f344fc52bd83ea3a98bedccd0048d732c Mon May 24 00:04:08 2021 -0700
    Let the user upload a file containing names or IDs of sequences already in the selected tree; run matUtils extract to get subtrees that include those sequences. protobufs.tab gets a new optional column to specify a file that maps alias to tree name/ID (e.g. for mapping EPI_ISL to public names/IDs).
• src/hg/hgPhyloPlace/phyloPlace.c
  • lines changed 323, context: html, text, full: html, text
    08ec019f344fc52bd83ea3a98bedccd0048d732c Mon May 24 00:04:08 2021 -0700
    Let the user upload a file containing names or IDs of sequences already in the selected tree; run matUtils extract to get subtrees that include those sequences. protobufs.tab gets a new optional column to specify a file that maps alias to tree name/ID (e.g. for mapping EPI_ISL to public names/IDs).
• src/hg/hgPhyloPlace/phyloPlace.h
  • lines changed 16, context: html, text, full: html, text
    08ec019f344fc52bd83ea3a98bedccd0048d732c Mon May 24 00:04:08 2021 -0700
    Let the user upload a file containing names or IDs of sequences already in the selected tree; run matUtils extract to get subtrees that include those sequences. protobufs.tab gets a new optional column to specify a file that maps alias to tree name/ID (e.g. for mapping EPI_ISL to public names/IDs).
• src/hg/hgPhyloPlace/phyloPlaceMain.c
  • lines changed 7, context: html, text, full: html, text
    08ec019f344fc52bd83ea3a98bedccd0048d732c Mon May 24 00:04:08 2021 -0700
    Let the user upload a file containing names or IDs of sequences already in the selected tree; run matUtils extract to get subtrees that include those sequences. protobufs.tab gets a new optional column to specify a file that maps alias to tree name/ID (e.g. for mapping EPI_ISL to public names/IDs).
• src/hg/hgPhyloPlace/runUsher.c
  • lines changed 40, context: html, text, full: html, text
    08ec019f344fc52bd83ea3a98bedccd0048d732c Mon May 24 00:04:08 2021 -0700
    Let the user upload a file containing names or IDs of sequences already in the selected tree; run matUtils extract to get subtrees that include those sequences. protobufs.tab gets a new optional column to specify a file that maps alias to tree name/ID (e.g. for mapping EPI_ISL to public names/IDs).
• src/hg/hgPhyloPlace/vcfFromFasta.c
  • lines changed 36, context: html, text, full: html, text
    bdc1ddd9389c69f90464e15fff6661b52befdd1c Sun May 23 13:49:32 2021 -0700
    If a sequence can't be aligned to the reference then move it from filteredSeqs to failedSeqs so it doesn't end up in the VCF with no actual calls.
• src/hg/hgSession/hgSession.c
  • lines changed 1, context: html, text, full: html, text
    e8cd6eb46b97e0f9d950ca21084d783ffd93b600 Wed May 19 11:41:10 2021 -0700
    strip off hub_#_ from assembly hub names for suggested session name
• src/hg/hgTables/mainPage.c
  • lines changed 1, context: html, text, full: html, text
    6f7f3db967507b384974021fb8cfac28528b4743 Wed May 19 10:23:38 2021 -0700
    Fix errant HTML tag reported by ChrisL. refs #27408
• src/hg/hgTracks/mainMain.c
  • lines changed 3, context: html, text, full: html, text
    130388103d6579f91a15a0922b5f237b689894b6 Tue May 18 15:56:51 2021 -0700
    Fix hgTracks web browser caching again. This time allow CGIs to specify their own HTTP headers, as of now only hgTracks prevents caching. refs #26627
• src/hg/htdocs/FAQ/FAQformat.html
  • lines changed 4, context: html, text, full: html, text
    a3d3c1d713678d6306a96be69a1df93a82e0dfdd Thu May 20 01:48:01 2021 -0700
    adding chromStart=chromEnd case to BED docs, refs #24836
• src/hg/htdocs/covid19.html
  • lines changed 6, context: html, text, full: html, text
    a115b6d2713ae73db872157d3abe2f9401733403 Mon May 17 10:11:39 2021 -0700
    Adding a publication to the covid.html page refs #27561
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 4, context: html, text, full: html, text
    2451a31c5dda55d37d1a5b2aa74d47679a5e232e Thu May 20 17:07:09 2021 -0700
    Making changes to vaccines announcement from code review, CR #27574
• src/hg/htdocs/images/gnomAD_LOEUFkey.png
  • lines changed 0, context: html, text, full: html, text
    e0c6e90e0a05c3ed41ad68f8623ea391dc37e4bb Mon May 17 15:58:01 2021 -0700
    Fixing up gnomad track after update, refs #26399
• src/hg/htdocs/style/HGStyle.css
  • lines changed 1, context: html, text, full: html, text
    a2f80f3dcb5304d565a18d746ecfecf005f48101 Wed May 19 10:38:45 2021 -0700
    Switch cursor on mouseover of TB main page section labels, as per internal review (ChrisL). refs #27408
  • lines changed 1, context: html, text, full: html, text
    3ddc1d1a3b75f16a581544ec81f2eacbfa5098ec Wed May 19 14:13:39 2021 -0700
    Add pointer cursor to More/Less pseudo-links, as per LRN. refs #27408
• src/hg/inc/cart.h
  • lines changed 3, context: html, text, full: html, text
    130388103d6579f91a15a0922b5f237b689894b6 Tue May 18 15:56:51 2021 -0700
    Fix hgTracks web browser caching again. This time allow CGIs to specify their own HTTP headers, as of now only hgTracks prevents caching. refs #26627
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    d04609be06e5269e6c47e9cec1ebb3802aba984c Mon May 24 10:09:42 2021 -0700
    New version number v415
• src/hg/lib/cart.c
  • lines changed 17, context: html, text, full: html, text
    130388103d6579f91a15a0922b5f237b689894b6 Tue May 18 15:56:51 2021 -0700
    Fix hgTracks web browser caching again. This time allow CGIs to specify their own HTTP headers, as of now only hgTracks prevents caching. refs #26627
• src/hg/makeDb/trackDb/human/cadd.ra
  • lines changed 1, context: html, text, full: html, text
    b08030471bfa4e4ba8cc033e30be7eec292188d4 Fri May 21 01:29:35 2021 -0700
    adding a special dev-only cadd trackDb for ticket on disappearing indels, refs #24836
• src/hg/makeDb/trackDb/human/caddAlpha.ra
  • lines changed 95, context: html, text, full: html, text
    b08030471bfa4e4ba8cc033e30be7eec292188d4 Fri May 21 01:29:35 2021 -0700
    adding a special dev-only cadd trackDb for ticket on disappearing indels, refs #24836
• src/hg/makeDb/trackDb/human/caddSuper.html
  • lines changed 12, context: html, text, full: html, text
    64868846b5a38ce13f3c5bce12bc97b5d85d5424 Fri May 21 11:26:37 2021 -0700
    made track description for revel and some changes to description for the cadd tracks
• src/hg/makeDb/trackDb/human/hg19/gnomadPLI.html
  • lines changed 7, context: html, text, full: html, text
    e0c6e90e0a05c3ed41ad68f8623ea391dc37e4bb Mon May 17 15:58:01 2021 -0700
    Fixing up gnomad track after update, refs #26399
  • lines changed 1, context: html, text, full: html, text
    3c2ba116af2306db733dce5c2a673aa548747e7a Mon May 17 16:01:08 2021 -0700
    Fixing small typo in file name, refs #26399
• src/hg/makeDb/trackDb/human/hg19/trackDb.gnomad.ra
  • lines changed 6, context: html, text, full: html, text
    298018504da1b08aee45cebfcefa56801be3ca9b Tue May 18 12:56:20 2021 -0700
    Swaping release tags for new track refs #26399
  • lines changed 41, context: html, text, full: html, text
    198529956c645f4fde938e8362b083077e955533 Tue May 18 13:37:14 2021 -0700
    Removing the old track stanzas refs #26399
• src/hg/makeDb/trackDb/human/hg38/liverMacParland.html
  • lines changed 95, context: html, text, full: html, text
    fece3a2a90791f486bdcb8d5a15acecded5fee12 Fri May 21 20:50:09 2021 -0700
    Edited details page to include corresponding insert file and updated the methods section. refs #26970
• src/hg/makeDb/trackDb/human/hg38/liverMacParlandCellType.insert.html
  • lines changed 12, context: html, text, full: html, text
    a9c2e92cbf2c22183413f89f5706bd554c4abb18 Fri May 21 20:52:34 2021 -0700
    Edited insert file to include relevant figures from paper. refs #26970
• src/hg/makeDb/trackDb/human/hg38/liverMacParlandDonor.insert.html
  • lines changed 23, context: html, text, full: html, text
    a9c2e92cbf2c22183413f89f5706bd554c4abb18 Fri May 21 20:52:34 2021 -0700
    Edited insert file to include relevant figures from paper. refs #26970
• src/hg/makeDb/trackDb/human/hg38/muscleDeMicheli.html
  • lines changed 21, context: html, text, full: html, text
    56022bc2e47cf57aabcc1804e9df589a49319ea8 Fri May 21 20:51:03 2021 -0700
    Edited details page to include corresponding insert file and updated the methods section. refs #26968
• src/hg/makeDb/trackDb/human/hg38/muscleDeMicheliCellType.insert.html
  • lines changed 9, context: html, text, full: html, text
    9aa5e9a2b30c41d6c69468ca403ace32e5d92034 Fri May 21 20:53:53 2021 -0700
    Edited insert file to include relevant figures from paper. refs #26968
• src/hg/makeDb/trackDb/human/hg38/muscleDeMicheliSample.insert.html
  • lines changed 19, context: html, text, full: html, text
    9aa5e9a2b30c41d6c69468ca403ace32e5d92034 Fri May 21 20:53:53 2021 -0700
    Edited insert file to include relevant figures from paper. refs #26968
• src/hg/makeDb/trackDb/human/revel.html
  • lines changed 94, context: html, text, full: html, text
    64868846b5a38ce13f3c5bce12bc97b5d85d5424 Fri May 21 11:26:37 2021 -0700
    made track description for revel and some changes to description for the cadd tracks
  • lines changed 1, context: html, text, full: html, text
    56a4b894ab60fb7fa7ca3fbec43ccf81a5cdfb84 Fri May 21 12:01:18 2021 -0700
    fixed typo
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    b08030471bfa4e4ba8cc033e30be7eec292188d4 Fri May 21 01:29:35 2021 -0700
    adding a special dev-only cadd trackDb for ticket on disappearing indels, refs #24836
• src/hg/makeDb/trackDb/virus/wuhCor1/variantMuts.html
  • lines changed 20, context: html, text, full: html, text
    81f19001a612343bae377e1df72facad1c5e3197 Mon May 24 00:06:17 2021 -0700
    Updating description to clarify how representative sequences were downloaded from GISAID. refs MLQ #27590
  • lines changed 2, context: html, text, full: html, text
    3547a31b1b15f488d80771ed1af98b0e37def648 Mon May 24 09:54:02 2021 -0700
    Minor wording tweak.
• src/hg/makeDb/trackDb/xenTro/xenTro10/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    c9ae7f8a1dc9034c90abab8e7a4db9d2522a6978 Mon May 17 17:22:09 2021 -0700
    Code review edits to change xenTro10 tracks priority, refs #27573
• src/hg/makefile
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/makefile
  • lines changed 6, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/pslSwap.c
  • lines changed 57, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/.gitignore
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/expected/mrnaNoRcTest.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/expected/mrnaTest.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/expected/transTest.psl
  • lines changed 12, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/expected/withSeqNoRcTest.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/expected/withSeqTest.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/input/mrna.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/input/trans.psl
  • lines changed 12, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/input/withSeq.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/pslSwap/tests/makefile
  • lines changed 54, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/automation/asmHubNcbiRefSeq.pl
  • lines changed 3, context: html, text, full: html, text
    046e02c14c273f26be1707e52a192323c6dfcedb Mon May 17 12:49:32 2021 -0700
    correct printf string no redmine
• src/hg/utils/automation/doBlastzChainNet.pl
  • lines changed 11, context: html, text, full: html, text
    89cf9546eeccf2c5d1d519943114bf86bf280306 Mon May 17 12:50:23 2021 -0700
    better location for download files for assembly hub results no redmine
• src/hg/utils/automation/doNcbiRefSeq.pl
  • lines changed 2, context: html, text, full: html, text
    5ca30cc929e4339791f5e9886caadc4e7922df56 Mon May 17 12:51:02 2021 -0700
    shorten the version string and extract the version number correctly refs #27575
• src/hg/utils/automation/doRecipBest.pl
  • lines changed 6, context: html, text, full: html, text
    89cf9546eeccf2c5d1d519943114bf86bf280306 Mon May 17 12:50:23 2021 -0700
    better location for download files for assembly hub results no redmine
• src/hg/utils/faToVcf/faToVcf.c
  • lines changed 3, context: html, text, full: html, text
    b4339e1d0387e40589c2e1f16727f8f1d882cd1e Wed May 19 09:32:32 2021 -0700
    faToVcf: when sequences aren't the expected size, mention that non-IUPAC chars are silently ignored since that's a common cause with non-UCSC-processed seqs.
• src/hg/utils/makefile
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
  • lines changed 2, context: html, text, full: html, text
    be7a9450777b54bf7a4796f6cb4502b692d4aa86 Thu May 20 09:00:59 2021 -0700
    place were psl tests were executed was missed in the previous commit
• src/hg/utils/pslMap/README
  • lines changed 64, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/makefile
  • lines changed 1, context: html, text, full: html, text
    90032ba9f879592a33cec272f160941f98b9b98d Wed May 19 04:20:59 2021 -0700
    remove dependency on stringify being compiled
  • lines changed 14, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/pslMap.c
  • lines changed 405, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/.gitignore
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/gapBoth.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/kgProt.psl
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMapOver.mapinfo
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMapOver.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMapOverChain.mapping.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMapOverSwap.mapinfo
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMapOverSwap.mapping.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMrnaMap.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/mrnaMrnaXMap.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/negQChain.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/retroParent.mapinfo
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/retroParent.psl
  • lines changed 4, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/expected/testMapFileWithInQName.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/README
  • lines changed 35, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/gapBothMRna.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/gapBothProtMRna.blast
  • lines changed 218, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/gencode.blocks.qName-psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/gencode.src.psl
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/kgMRna.psl
  • lines changed 22, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/kgProtMRna.blast
  • lines changed 2239, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/mm6ToHg17.chain
  • lines changed 237, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/mm6ToHg17.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/mrnaRefSeq.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/mrnaRefSeqX.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/mrnaToMm6.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/negQ.chain
  • lines changed 632, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/negQ.refSeq.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/parent.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/refSeqGen.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/input/retro.psl
  • lines changed 4, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/tests/makefile
  • lines changed 107, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMap/usage.txt
  • lines changed 64, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMapPostChain/makefile
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMapPostChain/pslMapPostChain.c
  • lines changed 323, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMapPostChain/tests/expected/C57B6NJ-1504TransMapTest.psl
  • lines changed 21, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMapPostChain/tests/input/C57B6NJ-1504.transMap-cases.psl
  • lines changed 51, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslMapPostChain/tests/makefile
  • lines changed 20, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/makefile
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/pslRc.c
  • lines changed 55, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/tests/expected/mrnaTest.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/tests/expected/transTest.psl
  • lines changed 12, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/tests/expected/withSeqTest.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/hg/utils/pslRc/tests/makefile
  • lines changed 36, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/inc/srcVersion.h
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    d04609be06e5269e6c47e9cec1ebb3802aba984c Mon May 24 10:09:42 2021 -0700
    New version number v415
• src/makefile
  • lines changed 1, context: html, text, full: html, text
    2ef09c0d2d7d9e13a7dc2f8f42219d3dfa323d3a Tue May 18 16:59:41 2021 -0700
    user requests isPcr for userApps. refs #27562
• src/userApps/fetchKentSource.sh
  • lines changed 1, context: html, text, full: html, text
    f73c1634c8d7d1fe40013a50081a66f51dee60d4 Wed May 19 11:38:33 2021 -0700
    adding isPcr to fetchKentSource.sh
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/git-reports/git-reports.c
  • lines changed 5, context: html, text, full: html, text
    9a91dbec708242c5edb4d601441544038c52ac79 Fri May 21 10:31:18 2021 -0700
    Only generate git reports for non github contributors, refs #27336
• src/utils/makefile
  • lines changed 4, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/README
  • lines changed 64, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/makefile
  • lines changed 14, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/pslMap.c
  • lines changed 405, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/.gitignore
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/gapBoth.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/kgProt.psl
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMapOver.mapinfo
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMapOver.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMapOverChain.mapping.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMapOverSwap.mapinfo
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMapOverSwap.mapping.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMrnaMap.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/mrnaMrnaXMap.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/negQChain.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/retroParent.mapinfo
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/retroParent.psl
  • lines changed 4, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/expected/testMapFileWithInQName.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/README
  • lines changed 35, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/gapBothMRna.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/gapBothProtMRna.blast
  • lines changed 218, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/gencode.blocks.qName-psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/gencode.src.psl
  • lines changed 5, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/kgMRna.psl
  • lines changed 22, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/kgProtMRna.blast
  • lines changed 2239, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/mm6ToHg17.chain
  • lines changed 237, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/mm6ToHg17.psl
  • lines changed 1, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/mrnaRefSeq.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/mrnaRefSeqX.psl
  • lines changed 17, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/mrnaToMm6.psl
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/negQ.chain
  • lines changed 632, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/negQ.refSeq.psl
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/parent.psl
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/refSeqGen.psl
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/input/retro.psl
  • lines changed 4, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/tests/makefile
  • lines changed 107, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMap/usage.txt
  • lines changed 64, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMapPostChain/makefile
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMapPostChain/pslMapPostChain.c
  • lines changed 323, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMapPostChain/tests/expected/C57B6NJ-1504TransMapTest.psl
  • lines changed 21, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMapPostChain/tests/input/C57B6NJ-1504.transMap-cases.psl
  • lines changed 51, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslMapPostChain/tests/makefile
  • lines changed 20, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/makefile
  • lines changed 3, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/pslRc.c
  • lines changed 55, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/tests/expected/mrnaTest.psl
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/tests/expected/transTest.psl
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/tests/expected/withSeqTest.psl
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslRc/tests/makefile
  • lines changed 36, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/makefile
  • lines changed 6, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/pslSwap.c
  • lines changed 57, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/.gitignore
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/expected/mrnaNoRcTest.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/expected/mrnaTest.psl
  • lines changed 7, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/expected/transTest.psl
  • lines changed 12, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/expected/withSeqNoRcTest.psl
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/expected/withSeqTest.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/input/mrna.psl
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    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/input/trans.psl
  • lines changed 12, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/input/withSeq.psl
  • lines changed 2, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/pslSwap/tests/makefile
  • lines changed 54, context: html, text, full: html, text
    02336754147822f5aa61ba13277123b2cc629001 Thu May 20 08:38:55 2021 -0700
    Moved pslMap, pslMapPostChain, pslRc, pslSwap to src/utils, as they do not have hg/lib dependencies.
• src/utils/qa/weeklybld/buildEnv.csh
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    733e623c4df5d809509d21b87e488f113ed4161e Mon May 24 10:08:36 2021 -0700
    v415 final build, refs #27542
• src/utils/qa/weeklybld/makeUserApps.csh
  • lines changed 1, context: html, text, full: html, text
    af1467a374f0fdbaaadc073a27e8ad2465efad80 Tue May 18 17:01:58 2021 -0700
    isPcr added to userApps
• src/utils/qa/weeklybld/sendLogEmail.pl
  • lines changed 2, context: html, text, full: html, text
    771efe738582225cd0cde5eda46173674356291b Fri May 21 11:13:30 2021 -0700
    Don't send build summary emails to github contributors, refs #27336

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• files changed: 173