All File Changes

v424_preview2 to v424_base (2021-11-22 to 2021-12-06) v424

• LICENSE
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    536628bf043b0a4a78a396f82206f16048df0a45 Mon Nov 22 18:50:05 2021 -0800
    clarifed description of adding a track via url, per conversation with Dan
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    075d7ed4100e881f951b1545728f27b7dc86067d Tue Nov 23 02:04:33 2021 -0800
    changes after code review, refs #28552, also adding the isPcr directory as per Jim to the new license files
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    4bfb857eaf3262775a93aa4415c0bd8c1d596e12 Tue Nov 23 06:53:41 2021 -0800
    more clarification on the license files, refs #27614, Removing the now obsolete file src/LICENSE
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    d886c40ad2010276913383b91d8979c0503f5c98 Tue Nov 23 13:14:24 2021 -0800
    more license details, after chat with Bob
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    8a30a9881f6b200c1313c0f898974efb182341dd Tue Nov 23 13:25:30 2021 -0800
    more license details fixes, after a longer chat with Bob
• confs/hgwdev.hg.conf
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    7df2532bc5175620e9b67ac01363f645b5beb0aa Sun Nov 28 01:12:03 2021 -0800
    Installing updated hg.conf files from UCSC servers
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    28cc032e33c3776077075d022b99208ae1fdc5b7 Sun Dec 5 01:12:00 2021 -0800
    Installing updated hg.conf files from UCSC servers
• src/LICENSE
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    536628bf043b0a4a78a396f82206f16048df0a45 Mon Nov 22 18:50:05 2021 -0800
    clarifed description of adding a track via url, per conversation with Dan
  • lines changed 4, context: html, text, full: html, text
    075d7ed4100e881f951b1545728f27b7dc86067d Tue Nov 23 02:04:33 2021 -0800
    changes after code review, refs #28552, also adding the isPcr directory as per Jim to the new license files
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    4bfb857eaf3262775a93aa4415c0bd8c1d596e12 Tue Nov 23 06:53:41 2021 -0800
    more clarification on the license files, refs #27614, Removing the now obsolete file src/LICENSE
• src/blatz/makefile
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    971b95067e2e05fb43a609875eff37500127bdc0 Tue Nov 23 10:07:17 2021 -0800
    Explicitly add -fcommon gcc option to blatz build, I don't want to mess with an old program like that
• src/fuse/udcFuse/udcFuse.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hca/hcaUnifyMatrix/hcaUnifyMatrix.c
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    0e9604766086b49eecef30226e15cea726cc14b6 Wed Nov 24 14:03:14 2021 -0800
    Updated usage message, which was missing a new column.
• src/hg/LICENSE
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    075d7ed4100e881f951b1545728f27b7dc86067d Tue Nov 23 02:04:33 2021 -0800
    changes after code review, refs #28552, also adding the isPcr directory as per Jim to the new license files
• src/hg/affyGnf/affyPslAndAtlasToBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyGnf/affyUclaMergePslData.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyGnf/pslAffySelect.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/affyPairsToSample.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/affyTransLiftedToSample.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/averageZoomLevels.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/avgTranscriptomeExps.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/bulkChr2XRegression.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/groupSamples.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/htmlFromBeds.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/maxTranscriptomeExps.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/mergeAffyFiles.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/nmerAlign.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/nmerParasolGenome.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/normalizeSampleFile.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/pickCassettePcrPrimers.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/samplesForCoordinates.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/scaleSampleFiles.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/affyTransciptome/trackFromLifts.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/agpAllToFaFile/agpAllToFaFile.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/agpCloneCheck/agpCloneCheck.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/agpCloneList/agpCloneList.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/agpMergeChromScaf/agpMergeChromScaf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/agpSangerUnfinished/agpSangerUnfinished.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/agpToFa/agpToFa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/agpToGl/agpToGl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/agpTweak/agpTweak.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/baseMask/baseMask.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/baseMask/baseMaskToBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/baseMask/bedToBaseMask.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/baseMask/cachedMask.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/baseMask/trackToBaseMask.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bedIntersect/bedIntersect.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bedItemOverlapCount/bedItemOverlapCount.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bedOrBlocks/bedOrBlocks.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bedOverlap/bedOverlap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bedSort/bedSort.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bedSplitOnChrom/bedSplitOnChrom.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bedThickOnly/bedThickOnly.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bedToGenePred/bedToGenePred.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bioImage/bioImageLoad/bioImageLoad.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bioImage/hgBioImage/hgBioImage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bioImage/hgBioImage/hgBioImage.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bioImage/knownToBioImage/knownToBioImage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bioImage/loadMahoney/loadMahoney.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bioImage/loadMahoney/mahoney.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/bioImage/loadMahoney/mahoney.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/blastToPsl/blastToPsl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/blastToPsl/blastXmlToPsl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/blastToPsl/ncbiBlast.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/blastToPsl/ncbiBlast.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/blastToPsl/pslBuild.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/blastToPsl/pslBuild.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/borfBig/borfBig.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cartDump/cartDump.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cartReset/cartReset.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ccTrack/bedToBinDex/bedToBinDex.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgiExample/cgiExample.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/HInv.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/affy10KDetails.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/affy120KDetails.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/ancientRref.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/annoFormatVep.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/annoGrateWigDb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/annoGratorGpVar.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/annoStreamDb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/annoStreamDbPslPlus.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/annoStreamWig.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/api.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/atomDb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/axtLib.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/bactigPos.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/bdgpExprLink.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/bdgpGeneInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/bed12Source.c
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    183696cf2ea83033b4bf4a34ab1b0db38f1c4567 Mon Nov 15 15:47:14 2021 -0800
    Moving bed12Source.c from cgilib to lib since it is not propriatary, and a HCA thing wanted to use it.
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/bed5FloatScore.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/bed6FloatScore.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/bed8Attrs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/bedCart.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/bgiGeneInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/bgiGeneSnp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/bgiSnp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/borkPseudoHom.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/cartRewrite.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/ccdsGeneMap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/ccdsInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/ccdsNotes.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/cdsSpec.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/celeraCoverage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/celeraDupPositive.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/cgh.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/chicken13kInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/chr18deletions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/cnpIafrate.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/cnpIafrate2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/cnpLocke.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/cnpSebat.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/cnpSebat2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/cnpSharp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/cnpSharp2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/codeBlast.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/cogs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/contigAcc.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/cpgIslandExt.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/ctgPos2.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/cutter.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/dbRIP.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/dbSnpRs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/delConrad2.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/delHinds2.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/dgv.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/dgvPlus.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/dless.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/dnaProbe.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/dv.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/dvBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/dvXref2.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/ensFace.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/ensInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/ensPhusionBlast.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/est3.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/factorSource.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/fbTables.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/fileUi.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/fishClones.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/flyBase2004Xref.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/flyBaseSwissProt.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/flyreg.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/flyreg2.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/gbMiscDiff.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/gbProtAnn.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/gbWarn.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/genMapDb.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/gencodeIntron.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/geneSimilarities.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/genoLay.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/genomicDups.c
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• src/hg/cgilib/genomicSuperDups.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/growthCondition.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/gtexBoxplot.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/gv.c
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• src/hg/cgilib/gvUi.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/gwasCatalog.c
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• src/hg/cgilib/hCytoBand.c
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• src/hg/cgilib/haplotypes.c
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• src/hg/cgilib/hapmapAllelesSummary.c
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• src/hg/cgilib/hashJoin.c
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• src/hg/cgilib/hgBam.c
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• src/hg/cgilib/hgExp.c
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• src/hg/cgilib/hgSeq.c
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• src/hg/cgilib/hgdpGeo.c
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• src/hg/cgilib/humanParalog.c
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• src/hg/cgilib/hvGfx.c
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• src/hg/cgilib/isochores.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/itemConf.c
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• src/hg/cgilib/itemDetailsHtml.c
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• src/hg/cgilib/jaxOrtholog.c
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• src/hg/cgilib/jaxQTL.c
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• src/hg/cgilib/jaxQTL3.c
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• src/hg/cgilib/joinMixer.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/kg1ToKg2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/ld.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/ld2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/lsSnpPdbChimera.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/makefile
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    183696cf2ea83033b4bf4a34ab1b0db38f1c4567 Mon Nov 15 15:47:14 2021 -0800
    Moving bed12Source.c from cgilib to lib since it is not propriatary, and a HCA thing wanted to use it.
• src/hg/cgilib/mammalPsg.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/mapSts.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/mathWig.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/mcnBreakpoints.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/mouseOrtho.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/mouseSyn.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/mouseSynWhd.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/ncRna.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/nonCodingUi.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/omicia.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/omimTitle.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/oreganno.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/oregannoUi.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/pal.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/pcrResult.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/pgPolyphenPred.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/pgSiftPred.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/polyGenotype.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/protVar.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/pscreen.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/pseudoGeneLink.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/pslWScore.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/putaInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/recombRate.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/recombRateMouse.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/recombRateRat.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/rhMapZfishInfo.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/rmskAlign.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/rmskJoined.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/rnaFold.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/rnaHybridization.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/rnaPLFold.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/rnaSecStr.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/roughAli.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/sageExp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/search.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/sessionThumbnail.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/sgdClone.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/sgdDescription.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/simpleNucDiff.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/simpleRepeat.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/snp125.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/snp125CodingCoordless.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/snp125Ui.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/snp132Ext.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/snpMap.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/snpUi.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/softPromoter.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/softberryHom.c
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• src/hg/cgilib/stsInfo.c
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• src/hg/cgilib/stsInfoMouse.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/stsInfoMouseNew.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/stsInfoRat.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/stsMapMouse.c
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• src/hg/cgilib/stsMapMouseNew.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/stsMapRat.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/suggest.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/switchDbTss.c
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• src/hg/cgilib/synteny100000.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/tRNAs.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/targetDb.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cgilib/tests/annoGratorTester.c
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• src/hg/cgilib/tfbsConsFactors.c
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• src/hg/cgilib/tfbsConsMap.c
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• src/hg/cgilib/tfbsConsSites.c
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• src/hg/cgilib/trackLayout.c
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• src/hg/cgilib/trackTable.c
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• src/hg/cgilib/transMapInfo.c
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• src/hg/cgilib/transMapSrc.c
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• src/hg/cgilib/transMapStuff.c
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• src/hg/cgilib/transRegCode.c
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• src/hg/cgilib/transRegCodeProbe.c
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• src/hg/cgilib/ucscRetroInfo.c
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• src/hg/cgilib/ucscRetroOrtho.c
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• src/hg/cgilib/userRegions.c
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• src/hg/cgilib/variant.c
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• src/hg/cgilib/variome.c
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• src/hg/cgilib/vegaInfoZfish.c
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• src/hg/cgilib/visiGene.c
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• src/hg/cgilib/vntr.c
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• src/hg/cgilib/wabAli.c
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• src/hg/cgilib/wgRna.c
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• src/hg/cgilib/wikiTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/yaleGencodeAssoc.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cgilib/zdobnovSynt.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/checkCoverageGaps/checkCoverageGaps.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/checkHgFindSpec/checkHgFindSpec.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/checkTableCoords/checkTableCoords.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/chimpStuff/chimpChromContigAgp/chimpChromContigAgp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/chimpStuff/chimpHiQualDiffs/chimpHiQualDiffs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/chimpStuff/chimpSuperQuals/chimpSuperQuals.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwAddAssembly/cdwAddAssembly.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cirm/cdw/cdwAddQaContamTarget/cdwAddQaContamTarget.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cirm/cdw/cdwAddQaEnrichTarget/cdwAddQaEnrichTarget.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cirm/cdw/cdwAddSubscriber/cdwAddSubscriber.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwChangeFormat/cdwChangeFormat.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cirm/cdw/cdwCorrectFileTags/cdwCorrectFileTags.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cirm/cdw/cdwCreateUser/cdwCreateUser.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cirm/cdw/cdwFakeManifestFromSubmit/cdwFakeManifestFromSubmit.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cirm/cdw/cdwGetFile/cdwGetFile.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwJob/cdwJob.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwMakeContaminationQa/cdwMakeContaminationQa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwMakeEnrichments/cdwMakeEnrichments.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwMakePairedEndQa/cdwMakePairedEndQa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwMakeRepeatQa/cdwMakeRepeatQa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwMakeReplicateQa/cdwMakeReplicateQa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwMakeValidFile/cdwMakeValidFile.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwQaEvaluate/cdwQaEvaluate.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwReallyRemoveFiles/cdwReallyRemoveFiles.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwRetryJob/cdwRetryJob.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwRunDaemon/cdwRunDaemon.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwRunOnIds/cdwRunOnIds.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwSubmit/cdwSubmit.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/cdwUnlockSubmittedFiles/cdwUnlockSubmittedFiles.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/cirm/cdw/cdwWebBrowse/cdwWebBrowse.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/inc/cdwBamFileFromRa.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/inc/cdwFastqFileFromRa.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/inc/cdwLib.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/inc/cdwQaWigSpotFromRa.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/inc/cdwValid.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/inc/cdwVcfFileFromRa.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/lib/cdwBamFileFromRa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/lib/cdwFastqFileFromRa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/lib/cdwLib.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/lib/cdwQaWigSpotFromRa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/lib/cdwValid.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/cirm/cdw/oneShot/facetFieldTest/facetFieldTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ctgFaToFa/ctgFaToFa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/ctgToChromFa/ctgToChromFa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/das/LICENSE
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    f3ea91ffb3854301e53d2cd7e125c56d168adc3c Mon Nov 22 11:12:37 2021 -0800
    more fixes on the license files after talking to Jim on the phone, refs #27614
• src/hg/das/das.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/dbTrash/dbTrash.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/dnaGene/dnaGene.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/LICENSE
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    f3ea91ffb3854301e53d2cd7e125c56d168adc3c Mon Nov 22 11:12:37 2021 -0800
    more fixes on the license files after talking to Jim on the phone, refs #27614
• src/hg/encode/converters/pairedTagToBed12/pairedTagToBed12.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/converters/tagToBed12/tagToBed12.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/docId/docIdReport/docIdReport.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/docId/docIdSubmitDir/docIdSubmitDir.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/docId/docIdTidy/docIdTidy.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/docId/docIdView/docIdView.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/docId/inc/docId.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/docId/lib/docIdSub.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/encodeCvTerm/encodeCvTerm.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/encodeExp/encodeExp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/encodeMergeReplicates/encodeMergeReplicates.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/encodeMergeReplicatesBatch/encodeMergeReplicatesBatch.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/encodePatchTdb/encodePatchTdb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/encodeRenameObj/encodeRenameObj.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/hgEncodeApi/hgEncodeApi.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/hgEncodeDataVersions/hgEncodeDataVersions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/hgEncodeScheduler/hgEncodeScheduler.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/inc/bedLogR.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/inc/encodePatchTdb.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/ldGencodeIntron/ldGencodeIntron.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode/lib/bedLogR.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/lib/encodePatchTdb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/metaCheck/metaCheck.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/metaCollect/metaCollect.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/metaRename/metaRename.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/regionAgp/regionAgp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/regionOrtho/regionOrtho.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/regionOrtho/regionOrtho.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode/validateCv/validateCv.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode3/eap/eapAddSoftware/eapAddSoftware.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/eap/eapAddStep/eapAddStep.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/eap/eapDaemon/eapDaemon.c
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• src/hg/encode3/eap/eapFinish/eapFinish.c
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• src/hg/encode3/eap/eapFreen/eapFreen.c
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• src/hg/encode3/eap/eapMetaSync/eapMetaSync.c
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• src/hg/encode3/eap/eapMonitor/eapMonitor.c
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• src/hg/encode3/eap/eapSchedule/eapSchedule.c
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• src/hg/encode3/eap/eapUpdateSoftware/eapUpdateSoftware.c
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• src/hg/encode3/eap/fix/eapDepricateUntracked/eapDepricateUntracked.c
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• src/hg/encode3/eap/inc/eapDb.h
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• src/hg/encode3/eap/inc/eapGraph.h
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• src/hg/encode3/eap/inc/eapLib.h
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• src/hg/encode3/eap/lib/eapDb.c
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• src/hg/encode3/eap/lib/eapGraph.c
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• src/hg/encode3/eap/lib/eapLib.c
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• src/hg/encode3/eap/oneShot/eapRunAddJson/eapRunAddJson.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/eap/oneShot/eapToHub/eapToHub.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/encodeDataWarehouse/edwAddAssembly/edwAddAssembly.c
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• src/hg/encode3/encodeDataWarehouse/edwAddQaContamTarget/edwAddQaContamTarget.c
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• src/hg/encode3/encodeDataWarehouse/edwAddQaEnrichTarget/edwAddQaEnrichTarget.c
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• src/hg/encode3/encodeDataWarehouse/edwAddSubscriber/edwAddSubscriber.c
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• src/hg/encode3/encodeDataWarehouse/edwChangeFormat/edwChangeFormat.c
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• src/hg/encode3/encodeDataWarehouse/edwCorrectFileTags/edwCorrectFileTags.c
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• src/hg/encode3/encodeDataWarehouse/edwCreateUser/edwCreateUser.c
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• src/hg/encode3/encodeDataWarehouse/edwFakeManifestFromSubmit/edwFakeManifestFromSubmit.c
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• src/hg/encode3/encodeDataWarehouse/edwJob/edwJob.c
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• src/hg/encode3/encodeDataWarehouse/edwMakeContaminationQa/edwMakeContaminationQa.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode3/encodeDataWarehouse/edwMakeEnrichments/edwMakeEnrichments.c
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• src/hg/encode3/encodeDataWarehouse/edwMakePairedEndQa/edwMakePairedEndQa.c
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• src/hg/encode3/encodeDataWarehouse/edwMakeRepeatQa/edwMakeRepeatQa.c
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• src/hg/encode3/encodeDataWarehouse/edwMakeReplicateQa/edwMakeReplicateQa.c
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• src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/edwMakeValidFile.c
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• src/hg/encode3/encodeDataWarehouse/edwMetaManiToTdb/edwMetaManiToTdb.c
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• src/hg/encode3/encodeDataWarehouse/edwQaEvaluate/edwQaEvaluate.c
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• src/hg/encode3/encodeDataWarehouse/edwReallyRemoveFiles/edwReallyRemoveFiles.c
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• src/hg/encode3/encodeDataWarehouse/edwRetryJob/edwRetryJob.c
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• src/hg/encode3/encodeDataWarehouse/edwRsyncEdwUser/edwRsyncEdwUser.c
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• src/hg/encode3/encodeDataWarehouse/edwRunDaemon/edwRunDaemon.c
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• src/hg/encode3/encodeDataWarehouse/edwRunOnIds/edwRunOnIds.c
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• src/hg/encode3/encodeDataWarehouse/edwScriptSubmit/edwScriptSubmit.c
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• src/hg/encode3/encodeDataWarehouse/edwScriptSubmitStatus/edwScriptSubmitStatus.c
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• src/hg/encode3/encodeDataWarehouse/edwSubmit/edwSubmit.c
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• src/hg/encode3/encodeDataWarehouse/edwWebAuthLogin/edwWebAuthLogin.c
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• src/hg/encode3/encodeDataWarehouse/edwWebAuthLogout/edwWebAuthLogout.c
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• src/hg/encode3/encodeDataWarehouse/edwWebBrowse/edwWebBrowse.c
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• src/hg/encode3/encodeDataWarehouse/edwWebCreateUser/edwWebCreateUser.c
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• src/hg/encode3/encodeDataWarehouse/edwWebDeprecate/edwWebDeprecate.c
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• src/hg/encode3/encodeDataWarehouse/edwWebRegisterScript/edwWebRegisterScript.c
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• src/hg/encode3/encodeDataWarehouse/edwWebSubmit/edwWebSubmit.c
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• src/hg/encode3/encodeDataWarehouse/edwWebXSendFile/edwWebXSendFile.c
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• src/hg/encode3/encodeDataWarehouse/edwWebXSendFile/edwWebXSendFile.h
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• src/hg/encode3/encodeDataWarehouse/fix/eapFixSortedBams/eapFixSortedBams.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixAddFastq/edwFixAddFastq.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixBasesInSample/edwFixBasesInSample.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixBzip/edwFixBzip.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixCshlSpikeins/edwFixCshlSpikeins.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixGbb2/edwFixGbb2.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixGtfBigBed/edwFixGtfBigBed.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixQualsAtPos/edwFixQualsAtPos.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixRenamed/edwFixRenamed.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixReplaced/edwFixReplaced.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixRevoked/edwFixRevoked.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixTarget2/edwFixTarget2.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixTargetSeq/edwFixTargetSeq.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixTechRep1/edwFixTechRep1.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode3/encodeDataWarehouse/fix/edwFixTechRepsFromTarballs/edwFixTechRepsFromTarballs.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/encode3/encodeDataWarehouse/fix/edwFixTstToTstff/edwFixTstToTstff.c
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• src/hg/encode3/encodeDataWarehouse/fix/edwFixUniqueMapRatio/edwFixUniqueMapRatio.c
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• src/hg/encode3/encodeDataWarehouse/inc/edwBamFileFromRa.h
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• src/hg/encode3/encodeDataWarehouse/inc/edwFastqFileFromRa.h
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• src/hg/encode3/encodeDataWarehouse/inc/edwLib.h
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• src/hg/encode3/encodeDataWarehouse/inc/edwQaWigSpotFromRa.h
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• src/hg/encode3/encodeDataWarehouse/inc/encodeDataWarehouse.h
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• src/hg/encode3/encodeDataWarehouse/lib/edwBamFileFromRa.c
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• src/hg/encode3/encodeDataWarehouse/lib/edwFastqFileFromRa.c
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• src/hg/encode3/encodeDataWarehouse/lib/edwLib.c
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• src/hg/encode3/encodeDataWarehouse/lib/edwQaWigSpotFromRa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/encodeDataWarehouse/lib/encodeDataWarehouse.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/encodeDataWarehouse/oneShot/edwFakeBiosample/edwFakeBiosample.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/encodeDataWarehouse/oneShot/edwFakeEncode2Submit/edwFakeEncode2Submit.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/encodeDataWarehouse/oneShot/edwToEap1/edwAnalysis.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/encodeDataWarehouse/oneShot/edwToEap1/edwAnalysis.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/encodeDataWarehouse/oneShot/edwToEap1/edwToEap1.c
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• src/hg/encode3/encodeDataWarehouse/oneShot/rsyncEdwExpDataType/rsyncEdwExpDataType.c
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• src/hg/encode3/encodeDataWarehouse/oneShot/sampleBam/sampleBam.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/encodeDataWarehouse/utils/edwBamFilter/edwBamFilter.c
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• src/hg/encode3/encodeDataWarehouse/utils/edwBamRemoveChrom/edwBamRemoveChrom.c
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• src/hg/encode3/encodeDataWarehouse/utils/edwBamStats/edwBamStats.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/encodeDataWarehouse/utils/edwBamToWig/edwBamToWig.c
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• src/hg/encode3/encodeDataWarehouse/utils/edwComparePeaks/edwComparePeaks.c
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• src/hg/encode3/encodeDataWarehouse/utils/edwReplicatedPeaks/edwReplicatedPeaks.c
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• src/hg/encode3/encodeDataWarehouse/utils/edwSamPairedEndStats/edwSamPairedEndStats.c
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• src/hg/encode3/encodeDataWarehouse/utils/edwSamRepeatAnalysis/edwSamRepeatAnalysis.c
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• src/hg/encode3/encodeDataWarehouse/utils/edwSolexaToSangerFastq/edwSolexaToSangerFastq.c
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• src/hg/encode3/importEncode2/encode2BedDoctor/encode2BedDoctor.c
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• src/hg/encode3/importEncode2/encode2BedPlusDoctor/encode2BedPlusDoctor.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/encode3/importEncode2/encode2CmpMd5/encode2CmpMd5.c
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• src/hg/encode3/importEncode2/encode2ExpDumpFlat/encode2ExpDumpFlat.c
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• src/hg/encode3/importEncode2/encode2FlattenFastqSubdirs/encode2FlattenFastqSubdirs.c
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• src/hg/encode3/importEncode2/encode2GffDoctor/encode2GffDoctor.c
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• src/hg/encode3/importEncode2/encode2MakeEncode3/encode2MakeEncode3.c
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• src/hg/encode3/importEncode2/encode2Manifest/encode2Manifest.c
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• src/hg/encode3/importEncode2/encode2Md5UpdateManifest/encode2Md5UpdateManifest.c
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• src/hg/encode3/importEncode2/encode2Meta/encode2Meta.c
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• src/hg/encode3/importEncode2/encode2MetaPatchRenamed/encode2MetaPatchRenamed.c
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• src/hg/encode3/importEncode2/encodeCvToDb/encodeCvToDb.c
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• src/hg/encode3/importEncode2/encodeExpToCvDb/encodeExpToCvDb.c
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• src/hg/encode3/validateFiles/validateFiles.c
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• src/hg/encode3/validateManifest/validateManifest.c
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• src/hg/extractPslForLfs/extractPslForLfs.c
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• src/hg/fakeFinContigs/fakeFinContigs.c
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• src/hg/featureBits/featureBits.c
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• src/hg/ffaToFa/ffaToFa.c
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• src/hg/fishClones/fishClones.c
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• src/hg/formatZfishSts/formatZfishSts.c
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• src/hg/fqToQa/fqToQa.c
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• src/hg/fqToQac/fqToQac.c
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• src/hg/fragPart/fragPart.c
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• src/hg/gbGetEntries/gbGetEntries.c
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• src/hg/geneOverlap/geneOverlap.c
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• src/hg/genePredCheck/genePredCheck.c
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• src/hg/genePredHisto/genePredHisto.c
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• src/hg/genePredSingleCover/genePredSingleCover.c
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• src/hg/genePredSingleCover/geneScore.c
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• src/hg/genePredSingleCover/geneScore.h
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• src/hg/genePredToBed/genePredToBed.c
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• src/hg/genePredToFakePsl/genePredToFakePsl.c
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• src/hg/genePredToGtf/genePredToGtf.c
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• src/hg/genePredToMafFrames/finishMafFrames.c
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• src/hg/genePredToMafFrames/finishMafFrames.h
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• src/hg/genePredToMafFrames/frameIncr.h
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• src/hg/genePredToMafFrames/genePredToMafFrames.c
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• src/hg/genePredToMafFrames/mkMafFrames.c
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• src/hg/genePredToMafFrames/mkMafFrames.h
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• src/hg/genePredToMafFrames/orgGenes.c
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• src/hg/genePredToMafFrames/orgGenes.h
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• src/hg/genePredToMafFrames/splitMultiMappings.c
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• src/hg/genePredToMafFrames/splitMultiMappings.h
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• src/hg/genePredToMrna/genePredToMrna.c
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• src/hg/getFeatDna/getFeatDna.c
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• src/hg/getRna/getRna.c
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• src/hg/getRnaPred/getRnaPred.c
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• src/hg/getallpep/getallpep.c
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• src/hg/gisaid/gisaidSample/demog.c
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• src/hg/gisaid/gisaidSample/gisaidSample.c
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• src/hg/gisaid/gisaidSample/gisaidSample.h
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• src/hg/gisaid/gisaidSample/sequence.c
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• src/hg/gisaid/gisaidSubj/demog.c
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• src/hg/gisaid/gisaidSubj/gisaidSubj.c
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• src/hg/gisaid/gisaidSubj/gisaidSubj.h
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• src/hg/gisaid/gisaidSubj/sequence.c
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• src/hg/gisaid/gisaidTable/advFilter.c
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• src/hg/gisaid/gisaidTable/configure.c
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• src/hg/gisaid/gisaidTable/getSeq.c
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• src/hg/gisaid/gisaidTable/gisaidSubjInfo.c
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• src/hg/gisaid/gisaidTable/gisaidTable.c
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• src/hg/gisaid/gisaidTable/gisaidTable.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/gpStats/gpStats.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gpToGtf/gpToGtf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gpcrParser/gpcrParser.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsBig/gsBig.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsIdXref/gsIdXref.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidAaMsa/gsidAaMsa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidGetConsensus/gsidGetConsensus.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidMember/bio.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidMember/bio.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidMember/gsidMember.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidMember/gsidMember.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidMember/paypalSignEncrypt.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidMember/paypalSignEncrypt.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidMsa/gsidMsa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidMsaToTab/gsidMsaToTab.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidPbGateway/gsidPbGateway.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidPosSelect/gsidPosSelect.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidSubj/clinical.c
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• src/hg/gsid/gsidSubj/demog.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidSubj/gsidSubj.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidSubj/gsidSubj.h
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• src/hg/gsid/gsidSubj/sequence.c
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• src/hg/gsid/gsidSubj/vaccine.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidSubj3/clinical.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidSubj3/demog.c
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• src/hg/gsid/gsidSubj3/gsidSubj3.c
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• src/hg/gsid/gsidSubj3/gsidSubj3.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/gsid/gsidSubj3/sequence.c
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• src/hg/gsid/gsidSubj3/vaccine.c
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• src/hg/gsid/gsidTable/advFilter.c
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• src/hg/gsid/gsidTable/configure.c
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• src/hg/gsid/gsidTable/getSeq.c
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• src/hg/gsid/gsidTable/gsidSubjInfo.c
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• src/hg/gsid/gsidTable/gsidTable.c
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• src/hg/gsid/gsidTable/gsidTable.h
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• src/hg/gsid/inc/gsid.h
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• src/hg/gsid/pbGsid/pbGsid.c
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• src/hg/gsid/pwdtest/bio.h
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• src/hg/gsid/pwdtest/members.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/gsid/pwdtest/paypalSignEncrypt.h
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• src/hg/gsid/pwdtest/pwdtest.c
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• src/hg/gsid/pwdtest/pwdtest.h
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• src/hg/hgApi/hgApi.c
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• src/hg/hgBatch/hgBatch.c
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• src/hg/hgBlat/hgBlat.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/hgBlatTest/hgBlatTest.c
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• src/hg/hgCert/hgCert.c
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• src/hg/hgChroms/hgChroms.c
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• src/hg/hgCollection/hgCollection.c
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• src/hg/hgConvert/hgConvert.c
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• src/hg/hgCoordConv/hgCoordConv.c
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• src/hg/hgCustom/hgCustom.c
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• src/hg/hgFileSearch/hgFileSearch.c
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• src/hg/hgFileUi/hgFileUi.c
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• src/hg/hgGene/alleles.c
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• src/hg/hgGene/altSplice.c
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• src/hg/hgGene/ctd.c
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• src/hg/hgGene/dnaBindMotif.c
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• src/hg/hgGene/domains.c
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• src/hg/hgGene/flyBaseInfo.c
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• src/hg/hgGene/gad.c
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• src/hg/hgGene/gencodeSection.c
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• src/hg/hgGene/gencodeSection.h
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• src/hg/hgGene/geneReviews.c
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• src/hg/hgGene/go.c
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• src/hg/hgGene/gtex.c
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• src/hg/hgGene/hgGene.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/hgGene/hgGene.h
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/hgGene/info.c
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• src/hg/hgGene/links.c
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• src/hg/hgGene/localization.c
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• src/hg/hgGene/malaCards.c
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• src/hg/hgGene/method.c
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• src/hg/hgGene/microarray.c
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• src/hg/hgGene/mrnaDescriptions.c
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• src/hg/hgGene/otherOrgs.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGene/pathways.c
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• src/hg/hgGene/pseudoGene.c
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• src/hg/hgGene/rgdInfo.c
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• src/hg/hgGene/rnaStructure.c
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• src/hg/hgGene/sequence.c
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• src/hg/hgGene/swissProtComments.c
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• src/hg/hgGene/synonym.c
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• src/hg/hgGene/wikiTrack.c
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• src/hg/hgGeneBands/hgGeneBands.c
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• src/hg/hgGeneList/hgGeneList.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGeneRing/hgGeneRing.c
  • lines changed 1, context: html, text, full: html, text
    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGeneRing/interaction.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGeneRing/interaction.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/bedList.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/browseRegions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/chromGraph.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/clickOnImage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/configure.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/correlate.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/custom.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/hgGenome.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/hgGenome.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/import.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/maf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/mainPage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/sortGenes.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/upload.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/usage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGenome/wiggle.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGetAnn/hgGetAnn.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgGtexApi/hgGtexApi.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgHubConnect/hgHubConnect.c
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    d17c507ba014280326dcbf54a3bbfd8e5f9989db Mon Nov 8 16:07:32 2021 -0800
    Fix pipeline timeout to properly ignore signal() returning non-zero, except in the case of a real error. Also get hgHubConnect to properly time out on hubCheck taking too long
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
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    23b67b422f361ca443b8a05d1b9223c91f47bf30 Tue Nov 30 07:10:28 2021 -0800
    fixing hgHubCheck bug found by Galt, refs #28566
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    ea752b0065368a5b24ba8dac7d28819b0869d873 Fri Dec 3 14:55:35 2021 -0800
    Fix some of the hubCheck timeout error messages as requested by qa, refs #28412
• src/hg/hgIntegrator/hgIntegrator.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgKnownGeneList/hgKnownGeneList.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgLiftOver/hgLiftOver.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgLinkIn/handlerList.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgLinkIn/handlerList.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgLinkIn/hgLinkIn.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgLinkIn/linkInHandlers.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgLinkIn/linkInHandlers.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgLogin/gbMembers.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgLogin/gbMembers.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgLogin/hgLogin.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgLogin/hgLogin.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgNotAvail/hgNotAvail.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgNotYet/hgNotYet.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgPal/hgPal.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgPcr/hgPcr.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgPublicSessions/hgPublicSessions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
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    0dde7cf89cb80a716e2e780958c356db7903c484 Thu Nov 25 06:13:58 2021 -0800
    making public sessions open in new window, refs #21958
• src/hg/hgSelect/hgSelect.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgSession/backup.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgSession/hgSession.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgSession/hgSession.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgSession/sessionData.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgSpeciesRna/hgSpeciesRna.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgSuggest/hgSuggest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/asFilter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/asFilter.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/bam.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/bedList.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/bigBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/bigWig.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/chromGraph.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/compositeTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/correlate.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/correlate.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/correlatePlot.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/custom.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/filterFields.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/galaxy.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/gffOut.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/great.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/hal.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/hgTables.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/hgTables.h
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/hic.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/identifiers.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/intersect.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/joining.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/longRange.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/maf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/mainPage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/microarrayTables.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/pal.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/rangeHistogram.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/schema.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/seqOut.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/sumStats.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/usage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/userRegions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/vcf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/wiggle.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTables/wikiTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTablesTest/hgTablesTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgText/hgText.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgText/hgText.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgText/hgWigText.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTrackUi/cgapSageUi.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTrackUi/encodePeakUi.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTrackUi/hgTrackUi.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTrackUi/hgTrackUi.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/altGraphXTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/bamTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/barChartTrack.c
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    9e6c57d6f56f6dc6e8d5d981fa097b6880787730 Wed Nov 24 14:09:51 2021 -0800
    Adding support for filtering based on facets selected in the details/UI page.
• src/hg/hgTracks/bedGraph.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/hgTracks/bedTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/bigBedTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/bigRmskTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/bigWarn.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/bigWarn.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/bigWigTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/cds.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/cds.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/cgapSageTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/chainTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/chromGraphTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/config.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/container.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/container.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/contigTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/coverageTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/cutterTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/cutterTrack.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/cytoBandTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/encode.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/encode.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/expRatioTracks.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/expRatioTracks.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/extTools.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/extTools.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/hgTracks/factorSource.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/gbrowseTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/gencodeTracks.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/gencodeTracks.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/goldTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/gtexEqtlClusterTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/gtexTracks.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/gvfTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/hapmapTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/hapmapTrack.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/hgTracks.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/hgTracks.h
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/hicTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/imageV2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/imageV2.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/interactTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/lolly.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/lollyTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/loweLabTracks.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/loweLabTracks.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/lrgTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/mafTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/mafTrack.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/mainMain.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/makeItemsTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/menu.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/multiWig.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/netTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/oneTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/oneTrack.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/peptideAtlasTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/pslTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/pubsTracks.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/pubsTracks.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/recTrackSets.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/renderMain.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/retroGene.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/retroGene.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/retroTracks.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/rmskJoinedTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/rmskTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/rnaFoldTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/rnaPLFoldTrack.c
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/rnaPLFoldTrack.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/sampleTracks.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/searchTracks.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/simpleTracks.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/snakeTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/switchGear.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/switchGear.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/transMapTracks.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/transMapTracks.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/transcriptome.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/variation.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/variation.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/vcfTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/wabaTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/wigCommon.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/wigMafTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/wigTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/wiki.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/hgTracks/wiki.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgTracks/wikiTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgUserSuggestion/hgUserSuggestion.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/hgUserSuggestion/hgUserSuggestion.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgVai/hgVai.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/hgVai/libifyMe.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgVai/libifyMe.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/bamClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/barChartClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/bigBedClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/bigDbSnpClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/bigRmskClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/ccdsClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/ccdsClick.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/hgc/cgapSageClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/hgc/dbRIP.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/encodeClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/expClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/facetedBar.c
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    a6f043714a1915dd4850ea3caebe2c6cee01217f Mon Nov 29 16:24:30 2021 -0800
    Letting columns in faceted bar charts be wider before the ... kicks in.
• src/hg/hgc/gencodeClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/gencodeClick.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/geneReviewsClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/geneReviewsClick.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/gtexClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/gtexEqtlClusterClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/gvfClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/hgc.c
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/hgc.h
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/hgdpClick.c
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/interactClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/lowelab.c
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/lrgClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/mafClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/makeItemsClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/mgcClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/mgcClick.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/numtsClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/numtsClick.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/parClick.c
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/parClick.h
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
• src/hg/hgc/peakClusters.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/pubs.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/regMotif.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/retroClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/retroClick.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/rmskJoinedClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/rnaFoldClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/transMapClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/transMapClick.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/txCdsInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/variomeClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/vcfClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/virusClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/virusClick.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/wiggleClick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgc/wikiTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgcentralTidy/hgcentralTidy.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgsql/hgsql.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgsqlSwapTables/hgsqlSwapTables.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgsqlTableDate/hgsqlTableDate.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgsqladmin/hgsqladmin.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgsqldump/hgsqldump.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/hgsqlimport/hgsqlimport.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/htdocs/FAQ/FAQgenes.html
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    a1f4839d112890e7e176e5be7535f247c0ae01ca Fri Nov 26 08:54:45 2021 -0800
    documenting mysql query to get refGene with the version suffix, no redmine, email from/with Mark
• src/hg/htdocs/goldenPath/help/customTrackText.html
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    e5f39f1693a8c1e9981ff3ad0bb6bb3e6adb7cde Mon Nov 22 13:31:54 2021 -0800
    change wording slightly
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    ba727e4df9b3ad7f02292cd170b74b4e9fe2c60c Mon Nov 22 13:33:59 2021 -0800
    split some over-long lines. not actual changes
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    ed6ba595e20e8d55ba2d5441c5bc8cbd5d7937de Mon Nov 22 14:43:05 2021 -0800
    tiny tweaks. refs #28551
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    048644bcfc6cb435ca3f1c1f7e10b13f9024a942 Mon Nov 22 14:50:39 2021 -0800
    tiny tweaks. refs #28551
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    e76728e08e3fc0a1095b4961bb3dabeb0a8cb364 Mon Nov 22 17:10:22 2021 -0800
    rephrasing a bit
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    536628bf043b0a4a78a396f82206f16048df0a45 Mon Nov 22 18:50:05 2021 -0800
    clarifed description of adding a track via url, per conversation with Dan
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    dd638ed5172629e7904b8c18b54150005178ae4f Mon Nov 22 19:11:50 2021 -0800
    removed contractions
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    a97fc1e7683c45ea203e849da91628d957cefee5 Wed Nov 24 16:07:43 2021 -0800
    moved a word to the right place so it makes sense now
• src/hg/htdocs/goldenPath/newsarch.html
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    44a5e34356b1cff8c516354e2571223f9232296e Tue Nov 23 12:52:04 2021 -0800
    Adding news announcement for first GenArk hub blog post refs #27990
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    120472125fdd62cce8e4cdea52508fe810953f0a Fri Dec 3 14:07:21 2021 -0800
    Announcing omicron VOC updated refs #28579
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    94ea22bc5d8d717562baf8c513164f6f73d3280a Fri Dec 3 14:11:59 2021 -0800
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    efc54b6ae7a7e9fa7b328fee8aacd47accfb8316 Thu Dec 2 16:45:36 2021 -0800
    Updating track description and colors for addition of Omicron variant.
• src/hg/htdocs/indexNews.html
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    44a5e34356b1cff8c516354e2571223f9232296e Tue Nov 23 12:52:04 2021 -0800
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    120472125fdd62cce8e4cdea52508fe810953f0a Fri Dec 3 14:07:21 2021 -0800
    Announcing omicron VOC updated refs #28579
• src/hg/htdocs/license/index.html
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    f3ea91ffb3854301e53d2cd7e125c56d168adc3c Mon Nov 22 11:12:37 2021 -0800
    more fixes on the license files after talking to Jim on the phone, refs #27614
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    more clarification on the license files, refs #27614, Removing the now obsolete file src/LICENSE
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
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• src/hg/inc/HInv.h
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• src/hg/inc/acemblyClass.h
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• src/hg/inc/affy10K.h
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• src/hg/inc/affy10KDetails.h
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• src/hg/inc/affy120KDetails.h
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• src/hg/inc/affyAllExonProbe.h
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• src/hg/inc/affyAtlas.h
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• src/hg/inc/affyGenoDetails.h
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• src/hg/inc/affyOffset.h
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• src/hg/inc/affyPairs.h
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• src/hg/inc/affyTransLifted.h
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• src/hg/inc/affyTranscriptome.h
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• src/hg/inc/agp.h
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• src/hg/inc/agpFrag.h
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• src/hg/inc/alignInfo.h
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• src/hg/inc/alignSeqSizes.h
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• src/hg/inc/alleleFreqs.h
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• src/hg/inc/allpredictions.h
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• src/hg/inc/altGraph.h
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• src/hg/inc/altGraphX.h
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• src/hg/inc/ancientRref.h
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• src/hg/inc/annoFormatVep.h
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• src/hg/inc/annoGrateWigDb.h
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• src/hg/inc/annoGratorGpVar.h
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• src/hg/inc/annoStreamDb.h
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• src/hg/inc/annoStreamWig.h
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• src/hg/inc/api.h
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• src/hg/inc/arCOGs.h
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• src/hg/inc/arcogdesc.h
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• src/hg/inc/atomDb.h
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• src/hg/inc/autoUpgrade.h
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• src/hg/inc/axtInfo.h
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• src/hg/inc/axtLib.h
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• src/hg/inc/bacCloneAlias.h
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• src/hg/inc/bacCloneXRef.h
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• src/hg/inc/bacEndAlias.h
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• src/hg/inc/bactigPos.h
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• src/hg/inc/barChartUi.h
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• src/hg/inc/baseMaskCommon.h
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• src/hg/inc/bdgpExprLink.h
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• src/hg/inc/bdgpGeneInfo.h
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• src/hg/inc/bdgpSwissProt.h
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• src/hg/inc/bed.h
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• src/hg/inc/bed12Source.h
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• src/hg/inc/bed12wSeq.h
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• src/hg/inc/bed5FloatScore.h
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• src/hg/inc/bed5Pval.h
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• src/hg/inc/bed6FloatScore.h
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• src/hg/inc/bed8Attrs.h
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• src/hg/inc/bedCart.h
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• src/hg/inc/bedDetail.h
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• src/hg/inc/bedGraph.h
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• src/hg/inc/bgiGeneInfo.h
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• src/hg/inc/bgiGeneSnp.h
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• src/hg/inc/bgiSnp.h
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• src/hg/inc/bigBedFilter.h
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• src/hg/inc/bigBedFind.h
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• src/hg/inc/bigBedLabel.h
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• src/hg/inc/bigRmskUi.h
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• src/hg/inc/bioImage.h
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• src/hg/inc/blastTab.h
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• src/hg/inc/blastzNet.h
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• src/hg/inc/borf.h
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• src/hg/inc/borkPseudoHom.h
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• src/hg/inc/botDelay.h
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• src/hg/inc/cart.h
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• src/hg/inc/cartDb.h
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• src/hg/inc/ccdsGeneMap.h
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• src/hg/inc/ccdsInfo.h
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• src/hg/inc/ccdsNotes.h
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• src/hg/inc/cddDesc.h
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• src/hg/inc/cddInfo.h
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• src/hg/inc/cdsEvidence.h
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• src/hg/inc/cdsOrtho.h
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• src/hg/inc/cdsPick.h
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• src/hg/inc/cdsSpec.h
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• src/hg/inc/celeraCoverage.h
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• src/hg/inc/celeraDupPositive.h
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• src/hg/inc/cgapSage/cgapSage.h
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• src/hg/inc/cgapSage/cgapSageLib.h
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• src/hg/inc/cgiApoptosis.h
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• src/hg/inc/chainCart.h
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• src/hg/inc/chainDb.h
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• src/hg/inc/chainGap.h
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• src/hg/inc/chainLink.h
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• src/hg/inc/chainNet.h
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• src/hg/inc/chainNetDbLoad.h
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• src/hg/inc/chainView.h
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• src/hg/inc/chicken13kInfo.h
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• src/hg/inc/chr18deletions.h
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• src/hg/inc/chromBins.h
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• src/hg/inc/chromColors.h
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• src/hg/inc/chromGraph.h
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• src/hg/inc/chromGraphFactory.h
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• src/hg/inc/chromInfo.h
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• src/hg/inc/chromInserts.h
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• src/hg/inc/chromKeeper.h
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• src/hg/inc/clonePos.h
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• src/hg/inc/cnpIafrate.h
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• src/hg/inc/cnpIafrate2.h
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• src/hg/inc/cnpLocke.h
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• src/hg/inc/cnpRedon.h
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• src/hg/inc/cnpSebat.h
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• src/hg/inc/cnpSebat2.h
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• src/hg/inc/cnpSharp.h
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• src/hg/inc/cnpSharp2.h
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• src/hg/inc/cnpSharpCutoff.h
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• src/hg/inc/cnpSharpSample.h
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• src/hg/inc/codeBlast.h
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• src/hg/inc/codeBlastScore.h
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• src/hg/inc/cogs.h
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• src/hg/inc/cogsxra.h
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• src/hg/inc/columnInfo.h
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• src/hg/inc/contigAcc.h
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• src/hg/inc/coordConv.h
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• src/hg/inc/cpgIslandExt.h
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• src/hg/inc/ctgPos2.h
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• src/hg/inc/customFactory.h
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• src/hg/inc/customPp.h
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• src/hg/inc/customTrack.h
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• src/hg/inc/cutter.h
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• src/hg/inc/cv.h
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• src/hg/inc/dbDb.h
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• src/hg/inc/dbRIP.h
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• src/hg/inc/dbSnpRs.h
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• src/hg/inc/defaultDb.h
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• src/hg/inc/delConrad2.h
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• src/hg/inc/delHinds2.h
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• src/hg/inc/dgv.h
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• src/hg/inc/dgvPlus.h
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• src/hg/inc/dless.h
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• src/hg/inc/dnaMarkovSql.h
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• src/hg/inc/dnaMotifSql.h
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• src/hg/inc/dnaProbe.h
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• src/hg/inc/dv.h
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• src/hg/inc/dvBed.h
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• src/hg/inc/dvXref2.h
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• src/hg/inc/easyGene.h
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• src/hg/inc/ec.h
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• src/hg/inc/ecAttribute.h
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• src/hg/inc/ecAttributeCode.h
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• src/hg/inc/ecCode.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodeErge.h
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• src/hg/inc/encode/encodeErge5race.h
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• src/hg/inc/encode/encodeErgeBinding.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodeErgeDNAseI.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodeErgeExpProm.h
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• src/hg/inc/encode/encodeErgeHssCellLines.h
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• src/hg/inc/encode/encodeErgeInVitroFoot.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodeErgeMethProm.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodeErgeStableTransf.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodeErgeSummary.h
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• src/hg/inc/encode/encodeErgeTransTransf.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodeExp.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodeHapMapAlleleFreq.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodeIndels.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodePeak.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodePrimateAlleles.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodeRegionInfo.h
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• src/hg/inc/encode/encodeRna.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/encodeStanfordPromoters.h
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• src/hg/inc/encode/encodeStanfordPromotersAverage.h
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• src/hg/inc/encode/wgEncodeGencodeAnnotationRemark.h
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• src/hg/inc/encode/wgEncodeGencodeExonSupport.h
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• src/hg/inc/encode/wgEncodeGencodeGeneSource.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/wgEncodeGencodePdb.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/wgEncodeGencodePolyAFeature.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/encode/wgEncodeGencodePubMed.h
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• src/hg/inc/encode/wgEncodeGencodeRefSeq.h
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• src/hg/inc/encode/wgEncodeGencodeTag.h
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• src/hg/inc/encode/wgEncodeGencodeTranscriptSource.h
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• src/hg/inc/encode/wgEncodeGencodeTranscriptSupport.h
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• src/hg/inc/encode/wgEncodeGencodeTranscriptionSupportLevel.h
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• src/hg/inc/encode/wgEncodeGencodeUniProt.h
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• src/hg/inc/encode3/encode2Manifest.h
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• src/hg/inc/encode3/encode3Valid.h
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• src/hg/inc/ensFace.h
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• src/hg/inc/ensInfo.h
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• src/hg/inc/ensPhusionBlast.h
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• src/hg/inc/ensXRefZfish.h
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• src/hg/inc/estOrientInfo.h
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• src/hg/inc/exonJunctionPrimers.h
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• src/hg/inc/expData.h
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• src/hg/inc/expRecord.h
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• src/hg/inc/exprBed.h
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• src/hg/inc/factorSource.h
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• src/hg/inc/fbTables.h
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• src/hg/inc/featureBits.h
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• src/hg/inc/fileUi.h
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• src/hg/inc/findKGAlias.h
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• src/hg/inc/findKGProtAlias.h
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• src/hg/inc/flyBase2004Xref.h
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• src/hg/inc/flyBaseSwissProt.h
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• src/hg/inc/flyreg.h
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• src/hg/inc/flyreg2.h
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• src/hg/inc/fosEndPairs.h
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• src/hg/inc/gbExtFile.h
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• src/hg/inc/gbMiscDiff.h
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• src/hg/inc/gbProtAnn.h
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• src/hg/inc/gbRNAs.h
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• src/hg/inc/gbSeq.h
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• src/hg/inc/gbWarn.h
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• src/hg/inc/genMapDb.h
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• src/hg/inc/genbank.h
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• src/hg/inc/genbankBlackList.h
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• src/hg/inc/gencodeGeneClass.h
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• src/hg/inc/gencodeIntron.h
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• src/hg/inc/geneBands.h
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• src/hg/inc/geneCheck.h
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• src/hg/inc/geneCheckDetails.h
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• src/hg/inc/geneCheckWidget.h
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• src/hg/inc/genePix.h
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• src/hg/inc/genePred.h
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• src/hg/inc/genePredReader.h
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• src/hg/inc/geneSimilarities.h
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• src/hg/inc/geneTree.h
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• src/hg/inc/genoLay.h
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• src/hg/inc/genomeRangeTreeFile.h
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• src/hg/inc/genomicSuperDups.h
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• src/hg/inc/genotype.h
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• src/hg/inc/genotypeFreqs.h
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• src/hg/inc/geoMirror.h
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• src/hg/inc/ggMrnaAli.h
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• src/hg/inc/ggTypes.h
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• src/hg/inc/goa.h
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• src/hg/inc/goaPart.h
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• src/hg/inc/googleAnalytics.h
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• src/hg/inc/gpFx.h
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• src/hg/inc/growthCondition.h
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• src/hg/inc/grp.h
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• src/hg/inc/gtexUi.h
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• src/hg/inc/gv.h
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• src/hg/inc/gvUi.h
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• src/hg/inc/gwasCatalog.h
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• src/hg/inc/hCommon.h
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• src/hg/inc/hCytoBand.h
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• src/hg/inc/hPrint.h
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• src/hg/inc/hVarSubst.h
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• src/hg/inc/haplotypes.h
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• src/hg/inc/hapmapAlleleFreq.h
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• src/hg/inc/hapmapAlleles.h
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• src/hg/inc/hapmapAllelesCombined.h
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• src/hg/inc/hapmapAllelesOrtho.h
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• src/hg/inc/hapmapAllelesSummary.h
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• src/hg/inc/hapmapLd.h
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• src/hg/inc/hapmapPhaseIIISummary.h
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• src/hg/inc/hapmapPrimateAlleles.h
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• src/hg/inc/hapmapSnps.h
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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• src/hg/inc/hapmapSnpsCombined.h
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• src/hg/inc/hashJoin.h
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• src/hg/inc/hdb.h
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• src/hg/inc/hgBam.h
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• src/hg/inc/hgColors.h
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• src/hg/inc/hgConfig.h
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• src/hg/inc/hgExp.h
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• src/hg/inc/hgFind.h
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• src/hg/inc/hgFindSpec.h
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• src/hg/inc/hgHgvs.h
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• src/hg/inc/hgMaf.h
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• src/hg/inc/hgSeq.h
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• src/hg/inc/hgdpGeo.h
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• src/hg/inc/hgnc.h
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• src/hg/inc/hicUi.h
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• src/hg/inc/hubConnect.h
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• src/hg/inc/hui.h
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• src/hg/inc/humanParalog.h
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• src/hg/inc/hvGfx.h
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• src/hg/inc/imageClone.h
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• src/hg/inc/indelShift.h
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• src/hg/inc/interactUi.h
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• src/hg/inc/ispyTables.h
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• src/hg/inc/itemAttr.h
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• src/hg/inc/itemConf.h
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• src/hg/inc/itemDetailsHtml.h
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• src/hg/inc/jalview.h
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• src/hg/inc/jaxOrtholog.h
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• src/hg/inc/jaxQTL.h
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• src/hg/inc/jaxQTL2.h
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• src/hg/inc/jaxQTL3.h
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• src/hg/inc/jgiGene.h
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• src/hg/inc/joinMixer.h
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• src/hg/inc/joiner.h
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• src/hg/inc/jsHelper.h
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• src/hg/inc/kg1ToKg2.h
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• src/hg/inc/kgAlias.h
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• src/hg/inc/kgColor.h
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• src/hg/inc/kgMapName.h
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• src/hg/inc/kgProtAlias.h
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• src/hg/inc/kgXref.h
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• src/hg/inc/knownToSuper.h
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• src/hg/inc/landmark.h
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• src/hg/inc/landmarkUi.h
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• src/hg/inc/lav.h
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• src/hg/inc/ld.h
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• src/hg/inc/ld2.h
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• src/hg/inc/ldUi.h
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• src/hg/inc/liftOver.h
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• src/hg/inc/liftOverChain.h
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• src/hg/inc/liftUp.h
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• src/hg/inc/llaInfo.h
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• src/hg/inc/longRange.h
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• src/hg/inc/lowelabArkinOperonScore.h
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• src/hg/inc/lowelabPfamHit.h
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• src/hg/inc/lowelabTIGROperonScore.h
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• src/hg/inc/loweutils.h
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
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• src/hg/inc/lrg.h
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• src/hg/inc/lsSnpPdb.h
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• src/hg/inc/lsSnpPdbChimera.h
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• src/hg/inc/mafFrames.h
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• src/hg/inc/mafGene.h
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• src/hg/inc/mafSummary.h
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• src/hg/inc/makeItemsItem.h
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• src/hg/inc/mammalPsg.h
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• src/hg/inc/mathWig.h
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• src/hg/inc/mdb.h
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• src/hg/inc/megablastInfo.h
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• src/hg/inc/metaChromGraph.h
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• src/hg/inc/mgiID.h
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• src/hg/inc/microarray.h
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• src/hg/inc/minChromSize.h
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• src/hg/inc/minGeneInfo.h
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• src/hg/inc/mouseOrtho.h
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• src/hg/inc/mouseSynWhd.h
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• src/hg/inc/mrnaMisMatch.h
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• src/hg/inc/mysqlTableStatus.h
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• src/hg/inc/ncRna.h
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• src/hg/inc/netAlign.h
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• src/hg/inc/netCart.h
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• src/hg/inc/nonCodingUi.h
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• src/hg/inc/omicia.h
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• src/hg/inc/omim.h
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• src/hg/inc/omimTitle.h
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• src/hg/inc/oreganno.h
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• src/hg/inc/oregannoUi.h
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• src/hg/inc/orthoAlleles.h
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• src/hg/inc/pairedTagAlign.h
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• src/hg/inc/pal.h
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• src/hg/inc/pbCommon.h
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• src/hg/inc/pbStamp.h
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• src/hg/inc/pcrResult.h
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• src/hg/inc/peptideMapping.h
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• src/hg/inc/pgPhenoAssoc.h
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• src/hg/inc/pgPolyphenPred.h
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• src/hg/inc/pgSiftPred.h
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• src/hg/inc/pgSnp.h
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• src/hg/inc/plasEndPairs.h
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• src/hg/inc/polyGenotype.h
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• src/hg/inc/protFeat.h
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• src/hg/inc/protVar.h
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• src/hg/inc/pscreen.h
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• src/hg/inc/pseudoGeneLink.h
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• src/hg/inc/pslReader.h
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• src/hg/inc/pslWQueryID.h
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• src/hg/inc/putaInfo.h
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• src/hg/inc/rangeTreeFile.h
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• src/hg/inc/rankProp.h
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• src/hg/inc/recombRate.h
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• src/hg/inc/recombRateMouse.h
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• src/hg/inc/recombRateRat.h
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• src/hg/inc/refSeqStatus.h
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• src/hg/inc/retroMrnaInfo.h
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• src/hg/inc/rgdQtl.h
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• src/hg/inc/rhMapInfo.h
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• src/hg/inc/rhMapZfishInfo.h
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• src/hg/inc/riken.h
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• src/hg/inc/rikenBest.h
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• src/hg/inc/rikenCluster.h
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• src/hg/inc/rmskAlign.h
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• src/hg/inc/rmskJoined.h
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• src/hg/inc/rmskOut.h
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• src/hg/inc/rmskOut2.h
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• src/hg/inc/rnaFold.h
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• src/hg/inc/rnaGenes.h
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• src/hg/inc/rnaGroup.h
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• src/hg/inc/rnaHybridization.h
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• src/hg/inc/rnaPLFold.h
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• src/hg/inc/rnaSecStr.h
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• src/hg/inc/sageCounts.h
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• src/hg/inc/samAlignment.h
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• src/hg/inc/sample.h
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• src/hg/inc/sangerGene.h
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• src/hg/inc/sangerGeneToWBGeneID.h
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• src/hg/inc/sargassoSeaXra.h
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• src/hg/inc/scopDes.h
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• src/hg/inc/scoredRef.h
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• src/hg/inc/search.h
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• src/hg/inc/seqWindow.h
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• src/hg/inc/sessionThumbnail.h
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• src/hg/inc/sgdAbundance.h
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• src/hg/inc/sgdClone.h
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• src/hg/inc/sgdDescription.h
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• src/hg/inc/sgdOther.h
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• src/hg/inc/simpleNucDiff.h
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• src/hg/inc/simpleRepeat.h
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• src/hg/inc/snakeUi.h
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• src/hg/inc/snoRNAs.h
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• src/hg/inc/snp.h
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• src/hg/inc/snp125.h
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• src/hg/inc/snp125CodingCoordless.h
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• src/hg/inc/snp125Exceptions.h
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• src/hg/inc/snp125Ui.h
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• src/hg/inc/snp132Ext.h
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• src/hg/inc/snpExceptions.h
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• src/hg/inc/snpExtFile.h
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• src/hg/inc/snpFasta.h
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• src/hg/inc/snpMap.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/snpSeq.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/snpTmp.h
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• src/hg/inc/snpUi.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/soTerm.h
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• src/hg/inc/spDb.h
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• src/hg/inc/splignAlign.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/sqlProg.h
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• src/hg/inc/stanMad.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/stsInfo2.h
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• src/hg/inc/stsInfoMouse.h
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• src/hg/inc/stsInfoMouseNew.h
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• src/hg/inc/stsInfoRat.h
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• src/hg/inc/stsMap.h
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• src/hg/inc/stsMapMouse.h
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• src/hg/inc/stsMapMouseNew.h
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• src/hg/inc/stsMapRat.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/suggest.h
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• src/hg/inc/switchDbTss.h
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• src/hg/inc/synMap.h
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• src/hg/inc/synteny100000.h
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• src/hg/inc/syntenyBerk.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/syntenySanger.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/tRNAs.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/tableDescriptions.h
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• src/hg/inc/tableStatus.h
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• src/hg/inc/tagAlign.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/targetDb.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/taxonDivision.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/taxonGeneticCode.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/taxonName.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/taxonNode.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/taxonXref.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/tfbsCons.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/tfbsConsFactors.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/tfbsConsMap.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/tfbsConsSites.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/tigrCmrGene.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/tigrOperon.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/tilingPath.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/trackDb.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/trackHub.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/trackLayout.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/trackTable.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/inc/trackVersion.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/transMapInfo.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/transMapSrc.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/transMapStuff.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/transRegCode.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/transRegCodeCondition.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/transRegCodeProbe.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/trashDir.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/txCluster.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/txCommon.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/txEdgeBed.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/txEdgeOrtho.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/txGraph.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/txInfo.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/txRnaAccs.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/ucscRetroInfo.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/ucscRetroOrtho.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/userRegions.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/variant.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/variantProjector.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/variome.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/vcfUi.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/vegaInfo.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/vegaInfoZfish.h
  • lines changed 1, context: html, text, full: html, text
    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/versionInfo.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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    9b267b40b1b9a6818886f2b51cf9d69b0e8b7d9e Mon Dec 6 10:20:29 2021 -0800
    New version number v424
• src/hg/inc/visiGene.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/vntr.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/web.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/wgRna.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/wiggle.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/wikiLink.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/wikiTrack.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/yaleGencodeAssoc.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/inc/zdobnovSynt.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/intronEnds/intronEnds.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/intronSizes/intronSizes.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/js/hgHubConnect.js
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    23b67b422f361ca443b8a05d1b9223c91f47bf30 Tue Nov 30 07:10:28 2021 -0800
    fixing hgHubCheck bug found by Galt, refs #28566
• src/hg/js/jquery-ui.js
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    114c587f4fd52744f6a5fdc16d76fc14f965fbbc Tue Nov 30 07:33:20 2021 -0800
    fixing a bug with MSIE detection in jquery that prevented code to fix the jquery prevent jump to tab bug from working, refs #28566
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    2d996a371a6e3fc481a3e945bc2e8d9fb679ad45 Thu Dec 2 01:05:32 2021 -0800
    Revert "fixing a bug with MSIE detection in jquery that prevented code to fix the jquery prevent jump to tab bug from working, refs #28566" browser.msie is not part of our js libraries anymore and not necessary. I replaced it with "true" in this commit, which is wrong, I should have replaced it with "false". This reverts commit 114c587f4fd52744f6a5fdc16d76fc14f965fbbc.
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    bc92cf44e015bc9cebafda7148c2bdd5caf8e4a6 Thu Dec 2 01:07:22 2021 -0800
    replacing b.browser.msie with 'false'. We do not support extremely old MSIE versions anymore and the 'browser' browser detection library is not part of the newer jquery versions anymore, refs #28578
• src/hg/lfsOverlap/lfsOverlap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/acemblyClass.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/affy10K.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/affyAllExonProbe.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/affyAtlas.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/affyGenoDetails.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/affyOffset.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/affyPairs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/affyTransLifted.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/affyTranscriptome.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/agp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/agpFrag.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/agpGap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/alignInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/alignSeqSizes.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/alleleFreqs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/allpredictions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/altGraph.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/altGraphX.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/arCOGs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/arcogdesc.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/autoUpgrade.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/axtInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/bacCloneAlias.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/bacCloneXRef.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/bacEndAlias.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/barChartUi.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/baseMaskCommon.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/bdgpSwissProt.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/bed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/bed12Source.c
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    183696cf2ea83033b4bf4a34ab1b0db38f1c4567 Mon Nov 15 15:47:14 2021 -0800
    Moving bed12Source.c from cgilib to lib since it is not propriatary, and a HCA thing wanted to use it.
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    60eff7582a4de0728a2f2d7b9d1cd417502e8ed3 Wed Nov 24 14:36:10 2021 -0800
    Fix merge conflict from both adding new stuff at same place.
• src/hg/lib/bed12wSeq.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/bed5Pval.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/bedDetail.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/bigBedLabel.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/bioImage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/blastTab.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/blastzNet.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/borf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/botDelay.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cart.c
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    075d7ed4100e881f951b1545728f27b7dc86067d Tue Nov 23 02:04:33 2021 -0800
    changes after code review, refs #28552, also adding the isPcr directory as per Jim to the new license files
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
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    178d5fbd9c24889c397ee2838337541f9f962f0a Tue Nov 23 15:04:17 2021 -0800
    changes after code review, refs #28552
• src/hg/lib/cartDb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cddDesc.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cddInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cdsEvidence.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cdsOrtho.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cdsPick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cgapSage/cgapSage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cgapSage/cgapSageLib.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cgiApoptosis.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chainCart.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chainDb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chainGap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chainLink.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chainNet.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chainNetDbLoad.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chromBins.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chromGraph.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chromGraphFactory.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chromInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chromInserts.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/chromKeeper.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/clonePos.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/clusterInputAwgDnase.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/clusterInputAwgDnase.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cnpRedon.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cnpSharpCutoff.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cnpSharpSample.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/codeBlastScore.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cogsxra.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/columnInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/coordConv.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cpgIsland.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/ctgPos.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/customFactory.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/customPp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/customTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cv.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/cytoBand.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/dbDb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/defaultDb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/dnaMarkovSql.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/dnaMotifSql.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/easyGene.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/ec.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/ecAttribute.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/ecAttributeCode.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/ecCode.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/encodeErge.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/encodeErgeHssCellLines.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/encodeExp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/encodeHapMapAlleleFreq.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/encodeIndels.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/encodePeak.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/encodeRegionInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/encodeRegionInfoCustom.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/encodeRna.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/encodeStanfordPromoters.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/encodeStanfordPromotersAverage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/pairedTagAlign.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/peptideMapping.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/tagAlign.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/unused/encodeErge5race.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/unused/encodeErgeBinding.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/unused/encodeErgeDNAseI.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/unused/encodeErgeExpProm.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/unused/encodeErgeInVitroFoot.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/unused/encodeErgeMethProm.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/unused/encodeErgeStableTransf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/unused/encodeErgeSummary.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/unused/encodeErgeTransTransf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/unused/encodePrimateAlleles.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/wgEncodeGencodeAnnotationRemark.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/wgEncodeGencodeExonSupport.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/wgEncodeGencodeGeneSource.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/encode/wgEncodeGencodePdb.c
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• src/hg/lib/encode/wgEncodeGencodePolyAFeature.c
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• src/hg/lib/encode/wgEncodeGencodePubMed.c
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• src/hg/lib/encode/wgEncodeGencodeRefSeq.c
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• src/hg/lib/encode/wgEncodeGencodeTag.c
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• src/hg/lib/encode/wgEncodeGencodeTranscriptSource.c
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• src/hg/lib/encode/wgEncodeGencodeTranscriptSupport.c
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• src/hg/lib/encode/wgEncodeGencodeTranscriptionSupportLevel.c
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• src/hg/lib/encode/wgEncodeGencodeUniProt.c
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• src/hg/lib/encode3/encode2Manifest.c
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• src/hg/lib/encode3/encode3Valid.c
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• src/hg/lib/ensXRefZfish.c
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• src/hg/lib/estOrientInfo.c
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• src/hg/lib/estPair.c
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• src/hg/lib/exoFish.c
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• src/hg/lib/expData.c
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• src/hg/lib/expRecord.c
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• src/hg/lib/exprBed.c
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• src/hg/lib/featureBits.c
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• src/hg/lib/findKGAlias.c
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• src/hg/lib/findKGProtAlias.c
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• src/hg/lib/fosEndPairs.c
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• src/hg/lib/gbExtFile.c
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• src/hg/lib/gbRNAs.c
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• src/hg/lib/gbSeq.c
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• src/hg/lib/gcPercent.c
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• src/hg/lib/genbank.c
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• src/hg/lib/genbankBlackList.c
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• src/hg/lib/gencodeGeneClass.c
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• src/hg/lib/geneBands.c
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• src/hg/lib/geneCheck.c
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• src/hg/lib/geneCheckDetails.c
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• src/hg/lib/geneCheckWidget.c
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• src/hg/lib/genePix.c
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• src/hg/lib/genePred.c
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• src/hg/lib/genePredReader.c
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• src/hg/lib/geneTree.c
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• src/hg/lib/genomeRangeTreeFile.c
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• src/hg/lib/genotype.c
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• src/hg/lib/genotypeFreqs.c
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• src/hg/lib/geoMirror.c
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• src/hg/lib/ggMrnaAli.c
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• src/hg/lib/ggTypes.c
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• src/hg/lib/glDbRep.c
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• src/hg/lib/goa.c
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• src/hg/lib/goaPart.c
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• src/hg/lib/googleAnalytics.c
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• src/hg/lib/gpFx.c
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• src/hg/lib/grp.c
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• src/hg/lib/gtexUi.c
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• src/hg/lib/hCommon.c
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• src/hg/lib/hPrint.c
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• src/hg/lib/hVarSubst.c
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• src/hg/lib/hapmapAlleleFreq.c
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• src/hg/lib/hapmapAlleles.c
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• src/hg/lib/hapmapAllelesCombined.c
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• src/hg/lib/hapmapAllelesOrtho.c
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• src/hg/lib/hapmapLd.c
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• src/hg/lib/hapmapPhaseIIISummary.c
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• src/hg/lib/hapmapPrimateAlleles.c
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• src/hg/lib/hapmapSnps.c
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• src/hg/lib/hapmapSnpsCombined.c
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• src/hg/lib/hdb.c
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• src/hg/lib/hgColors.c
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• src/hg/lib/hgConfig.c
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• src/hg/lib/hgFind.c
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• src/hg/lib/hgFindSpec.c
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• src/hg/lib/hgFindSpecCustom.c
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• src/hg/lib/hgHgvs.c
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• src/hg/lib/hgHgvsParse.c
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• src/hg/lib/hgMaf.c
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• src/hg/lib/hgnc.c
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• src/hg/lib/hicUi.c
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• src/hg/lib/hubConnect.c
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• src/hg/lib/hui.c
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    a57b88d0d1e45c647aa38cd739543f570c4133de Thu Nov 25 03:20:57 2021 -0800
    adding mouseover text to folder icon, refs #28558
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    3ad513ef979e7232d1fc64d9b8244a91d2703c58 Wed Dec 1 17:02:02 2021 -0800
    Changed the text for the folder icon mouseover refs #28558
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    9e2c76708842498a21abb7e0de8409da42d90e5a Fri Dec 3 11:05:53 2021 -0800
    Paring down mouseover wording for folders refs #28558
• src/hg/lib/imageClone.c
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• src/hg/lib/indelShift.c
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• src/hg/lib/interactUi.c
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• src/hg/lib/ispyTables.c
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• src/hg/lib/itemAttr.c
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• src/hg/lib/jalview.c
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• src/hg/lib/jaxQTL2.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/jgiGene.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/joiner.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/jsHelper.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/kgAlias.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/kgColor.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/kgMapName.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/kgProtAlias.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/kgXref.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/knownCanonical.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/knownInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/knownMore.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/knownToSuper.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/landmark.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/landmarkUi.c
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• src/hg/lib/lav.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/lfs.c
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• src/hg/lib/liftOver.c
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• src/hg/lib/liftOverChain.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/liftUp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/llaInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/longRange.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/lowelabArkinOperonScore.c
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• src/hg/lib/lowelabPfamHit.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/lowelabPfamHit.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/lowelabTIGROperonScore.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/loweutils.c
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/lrg.c
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• src/hg/lib/lsSnpPdb.c
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• src/hg/lib/mafFrames.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/mafGene.c
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• src/hg/lib/mafSummary.c
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• src/hg/lib/makeItemsItem.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/makefile
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    183696cf2ea83033b4bf4a34ab1b0db38f1c4567 Mon Nov 15 15:47:14 2021 -0800
    Moving bed12Source.c from cgilib to lib since it is not propriatary, and a HCA thing wanted to use it.
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
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    60eff7582a4de0728a2f2d7b9d1cd417502e8ed3 Wed Nov 24 14:36:10 2021 -0800
    Fix merge conflict from both adding new stuff at same place.
• src/hg/lib/mdb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/megablastInfo.c
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• src/hg/lib/metaChromGraph.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/mgiID.c
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• src/hg/lib/microarray.c
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• src/hg/lib/minChromSize.c
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• src/hg/lib/minGeneInfo.c
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• src/hg/lib/mrnaMisMatch.c
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• src/hg/lib/mysqlTableStatus.c
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• src/hg/lib/netAlign.c
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• src/hg/lib/netCart.c
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• src/hg/lib/newfoo/cytoBand.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/ooUtils.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/orthoAlleles.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/pbStamp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/pepPred.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/pgPhenoAssoc.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/pgSnp.c
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• src/hg/lib/plasEndPairs.c
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• src/hg/lib/protFeat.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/pslReader.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/pslWQueryID.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/qaSeq.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/rangeTreeFile.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/rankProp.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/refLink.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/refSeqStatus.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/retroMrnaInfo.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/rgdQtl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/rhMapInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/riken.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/rikenBest.c
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• src/hg/lib/rikenCluster.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/rmskOut.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/rmskOut2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/rnaGene.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/rnaGenes.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/rnaGroup.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/sage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/sageCounts.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/samAlignment.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/sample.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/sanger22extra.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/sangerGene.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/sangerGeneToWBGeneID.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/sargassoSeaXra.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/scopDes.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/scoredRef.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/seqWindow.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/sgdAbundance.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/sgdOther.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/snakeUi.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/snoRNAs.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/snoRNAs.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/snp.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/snp125Exceptions.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/snpExceptions.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/snpExtFile.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/snpFasta.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/snpSeq.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/snpTmp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/soTerm.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/spDb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/splignAlign.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/sqlProg.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/stanMad.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/stsAlias.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/stsInfo2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/stsMap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/lib/stsMarker.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/synMap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/syntenyBerk.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/syntenySanger.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/tableDescriptions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/tableStatus.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/taxonDivision.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/taxonGeneticCode.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/taxonName.c
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• src/hg/lib/taxonNode.c
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• src/hg/lib/taxonXref.c
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• src/hg/lib/tests/binTest.c
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• src/hg/lib/tests/customTrackTester.c
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• src/hg/lib/tests/genePredTester.c
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• src/hg/lib/tests/hdbTest.c
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• src/hg/lib/tests/hgvsTester.c
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• src/hg/lib/tests/pslReaderTester.c
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• src/hg/lib/tests/spDbTest.c
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• src/hg/lib/tests/sqlCheck.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/tfbsCons.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/tigrCmrGene.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/tigrOperon.c
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• src/hg/lib/tilingPath.c
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• src/hg/lib/traceInfo.c
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• src/hg/lib/trackDb.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/trackDbCustom.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/trackHub.c
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• src/hg/lib/trackVersion.c
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• src/hg/lib/transRegCodeCondition.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/trashDir.c
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• src/hg/lib/txCluster.c
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• src/hg/lib/txCommon.c
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• src/hg/lib/txEdgeBed.c
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• src/hg/lib/txEdgeOrtho.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/txGraph.c
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• src/hg/lib/txInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/txRnaAccs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/variantProjector.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/vcfUi.c
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• src/hg/lib/vegaInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/web.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/wigAsciiToBinary.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/wigDataStream.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/wiggle.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/wiggleCart.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/wiggleUtils.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/lib/wikiLink.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/liftAcross/liftAcross.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/liftAgp/liftAgp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/liftFrags/liftFrags.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/liftOver/liftOver.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/liftOver/liftOverMerge.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/liftUp/liftUp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/logCrawl/accessLogFilter/accessLogFilter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/logCrawl/accessLogMerge/accessLogMerge.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/logCrawl/accessLogSort/accessLogSort.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/logCrawl/accessLogWigs/accessLogWigs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/logCrawl/crawlForHogs/crawlForHogs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/logCrawl/crawlForPosAndTime/crawlForPosAndTime.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/logCrawl/encodeUserDbCrawl/encodeUserDbCrawl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/logCrawl/hgAccessCrawl/hgAccessCrawl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/logCrawl/sessionDbCrawl/sessionDbCrawl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/logCrawl/ticksToWig/ticksToWig.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/doc/asmHubs/asmHubs.mk
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    4f32f0ed3a5bf91211465c8db671ab88148b241d Fri Dec 3 14:15:36 2021 -0800
    add a separate target for just the index pages no redmine
• src/hg/makeDb/doc/asmHubs/commonHtml.pm
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    4c3db3474f70fda782defb5d547412877413d5a7 Fri Dec 3 14:16:30 2021 -0800
    use the ROOT var to establish the path to sorttable.js no redmine
• src/hg/makeDb/doc/asmHubs/hubIndex.pl
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    1d146045a364ba90cc1d5e04e376e0d3a87441ac Fri Dec 3 14:16:45 2021 -0800
    use the ROOT var to establish the path to sorttable.js no redmine
• src/hg/makeDb/doc/asmHubs/master.run.list
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    89612d81c4d63c4dde4e0cc7601cb927e5d8d5ff Sun Dec 5 16:19:30 2021 -0800
    adding new Ferret assembly per D. Haussler request GCF_011764305.1_ASM1176430v1.1 no redmine
• src/hg/makeDb/doc/asmHubs/rtp1.ace2.faa.gz
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    d9c1bc641f6274ed752c0565b4b5b0276efb3340 Fri Dec 3 14:19:00 2021 -0800
    adding the sequence NP_389226.1.prot for other organisms outside vertebrates no redmine
• src/hg/makeDb/doc/hg19.txt
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    ec3d64b274d7d36030ea54d86ecdb96afc18f35d Wed Aug 25 10:56:56 2021 -0700
    Updating path to cell browser matrix and meta.tsv.
• src/hg/makeDb/doc/hg38/lastzRuns.txt
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    a7c4b863c15887307ad9ac46cf198bb778523c42 Mon Nov 29 16:07:50 2021 -0800
    Human Hg38 vs. goat GCF_001704415.1 lastz/chain/net run for user, refs #28530
• src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv
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    89612d81c4d63c4dde4e0cc7601cb927e5d8d5ff Sun Dec 5 16:19:30 2021 -0800
    adding new Ferret assembly per D. Haussler request GCF_011764305.1_ASM1176430v1.1 no redmine
• src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv
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    89612d81c4d63c4dde4e0cc7601cb927e5d8d5ff Sun Dec 5 16:19:30 2021 -0800
    adding new Ferret assembly per D. Haussler request GCF_011764305.1_ASM1176430v1.1 no redmine
• src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv
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    ab0447a17c1443afa4d0a66f38621cfeb9afbae7 Fri Dec 3 14:23:26 2021 -0800
    adding bread wheat GCA_907166925.1_wheat_cv_fielder_v1_assembly per user request
• src/hg/makeDb/doc/wuhCor1/variantMuts.txt
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    99acbcf9be0a3ba5974c153d54e021fd9eb9feda Thu Dec 2 07:44:49 2021 -0800
    adding makedoc for omicron mutations, refs #28579
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    8c0b3211b4cb41ba06bff16d0df54b95c9138249 Thu Dec 2 15:39:14 2021 -0800
    Updated B.1.1.529 / Omicron subtracks of VoC track: use Nick's scripts on all available Omicron sequences, thresholds of 0.8 for SNVs, 0.7 for indels.
• src/hg/makeDb/doc/zoonomiaAsmHub/makefile
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    016dc9eaa7c179b628f450b6d3a2eed84805b752 Fri Dec 3 14:25:42 2021 -0800
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• src/hg/makeDb/doc/zoonomiaAsmHub/zoonomia.orderList.tsv
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    016dc9eaa7c179b628f450b6d3a2eed84805b752 Fri Dec 3 14:25:42 2021 -0800
    starting zoo241 hub listings no redmine
• src/hg/makeDb/genbank/src/align/gbAlignCommon.c
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• src/hg/makeDb/genbank/src/align/gbAlignCommon.h
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• src/hg/makeDb/genbank/src/align/gbAlignGet.c
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• src/hg/makeDb/genbank/src/align/gbAlignInstall.c
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• src/hg/makeDb/genbank/src/ccds/ccdsCommon.c
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• src/hg/makeDb/genbank/src/ccds/ccdsCommon.h
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• src/hg/makeDb/genbank/src/ccds/ccdsImport.c
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• src/hg/makeDb/genbank/src/ccds/ccdsLocationsJoin.c
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• src/hg/makeDb/genbank/src/ccds/ccdsLocationsJoin.h
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• src/hg/makeDb/genbank/src/ccds/ccdsMkTables.c
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• src/hg/makeDb/genbank/src/ccds/mkCcdsGeneMap.c
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• src/hg/makeDb/genbank/src/dbload/dbLoadOptions.c
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• src/hg/makeDb/genbank/src/dbload/dbLoadOptions.h
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• src/hg/makeDb/genbank/src/dbload/dbLoadPartitions.c
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• src/hg/makeDb/genbank/src/dbload/dbLoadPartitions.h
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• src/hg/makeDb/genbank/src/dbload/gbAlignData.c
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• src/hg/makeDb/genbank/src/dbload/gbAlignData.h
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• src/hg/makeDb/genbank/src/dbload/gbAlignTbl.c
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• src/hg/makeDb/genbank/src/dbload/gbAlignTbl.h
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• src/hg/makeDb/genbank/src/dbload/gbBuildState.c
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• src/hg/makeDb/genbank/src/dbload/gbBuildState.h
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• src/hg/makeDb/genbank/src/dbload/gbGeneTbl.c
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• src/hg/makeDb/genbank/src/dbload/gbGeneTbl.h
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• src/hg/makeDb/genbank/src/dbload/gbIgnoreDelete.c
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• src/hg/makeDb/genbank/src/dbload/gbIgnoreDelete.h
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• src/hg/makeDb/genbank/src/dbload/gbLoadRna.c
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• src/hg/makeDb/genbank/src/dbload/gbMDParse.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/genbank/src/dbload/gbMDParse.h
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• src/hg/makeDb/genbank/src/dbload/gbMetaData.c
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• src/hg/makeDb/genbank/src/dbload/gbMetaData.h
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• src/hg/makeDb/genbank/src/extFileUpdate/extFileUpdate.c
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• src/hg/makeDb/genbank/src/extFileUpdate/raInfoTbl.c
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• src/hg/makeDb/genbank/src/extFileUpdate/raInfoTbl.h
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• src/hg/makeDb/genbank/src/gbConf/gbConf.c
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• src/hg/makeDb/genbank/src/gbGetSeqs/gbGetSeqs.c
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• src/hg/makeDb/genbank/src/gbGetSeqs/gbGetSeqs.h
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• src/hg/makeDb/genbank/src/gbGetSeqs/oiData.c
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• src/hg/makeDb/genbank/src/gbGetSeqs/oiData.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/genbank/src/gbGetSeqs/pepData.c
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• src/hg/makeDb/genbank/src/gbGetSeqs/pepData.h
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• src/hg/makeDb/genbank/src/gbGetSeqs/pslData.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/genbank/src/gbGetSeqs/pslData.h
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• src/hg/makeDb/genbank/src/gbGetSeqs/raData.c
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• src/hg/makeDb/genbank/src/gbGetSeqs/raData.h
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• src/hg/makeDb/genbank/src/gbGetSeqs/seqData.c
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• src/hg/makeDb/genbank/src/gbGetSeqs/seqData.h
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• src/hg/makeDb/genbank/src/gbSanity/chkAlignTbls.c
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• src/hg/makeDb/genbank/src/gbSanity/chkAlignTbls.h
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• src/hg/makeDb/genbank/src/gbSanity/chkCommon.c
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• src/hg/makeDb/genbank/src/gbSanity/chkCommon.h
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• src/hg/makeDb/genbank/src/gbSanity/chkGbIndex.c
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• src/hg/makeDb/genbank/src/gbSanity/chkGbIndex.h
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• src/hg/makeDb/genbank/src/gbSanity/chkMetaDataTbls.c
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• src/hg/makeDb/genbank/src/gbSanity/chkMetaDataTbls.h
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• src/hg/makeDb/genbank/src/gbSanity/chkSeqTbl.c
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• src/hg/makeDb/genbank/src/gbSanity/chkSeqTbl.h
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• src/hg/makeDb/genbank/src/gbSanity/gbSanity.c
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• src/hg/makeDb/genbank/src/gbSanity/metaData.c
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• src/hg/makeDb/genbank/src/gbSanity/metaData.h
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• src/hg/makeDb/genbank/src/inc/extFileTbl.h
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• src/hg/makeDb/genbank/src/inc/gbAligned.h
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• src/hg/makeDb/genbank/src/inc/gbConf.h
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• src/hg/makeDb/genbank/src/inc/gbDefs.h
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• src/hg/makeDb/genbank/src/inc/gbEntry.h
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• src/hg/makeDb/genbank/src/inc/gbFa.h
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• src/hg/makeDb/genbank/src/inc/gbFileOps.h
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• src/hg/makeDb/genbank/src/inc/gbGenome.h
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• src/hg/makeDb/genbank/src/inc/gbIgnore.h
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• src/hg/makeDb/genbank/src/inc/gbIndex.h
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• src/hg/makeDb/genbank/src/inc/gbLoadedTbl.h
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• src/hg/makeDb/genbank/src/inc/gbMem.h
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• src/hg/makeDb/genbank/src/inc/gbPipeline.h
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• src/hg/makeDb/genbank/src/inc/gbProcessed.h
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• src/hg/makeDb/genbank/src/inc/gbRelease.h
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• src/hg/makeDb/genbank/src/inc/gbSql.h
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• src/hg/makeDb/genbank/src/inc/gbStatusTbl.h
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• src/hg/makeDb/genbank/src/inc/gbUpdate.h
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• src/hg/makeDb/genbank/src/inc/gbVerb.h
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• src/hg/makeDb/genbank/src/inc/imageCloneTbl.h
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• src/hg/makeDb/genbank/src/inc/mgcStatusTbl.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/inc/seqTbl.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/inc/sqlDeleter.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/inc/sqlUpdater.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/inc/uniqueStrTbl.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/lib/extFileTbl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/lib/gbAligned.c
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• src/hg/makeDb/genbank/src/lib/gbConf.c
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• src/hg/makeDb/genbank/src/lib/gbDefs.c
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• src/hg/makeDb/genbank/src/lib/gbEntry.c
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• src/hg/makeDb/genbank/src/lib/gbFa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/lib/gbFileOps.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/lib/gbGenome.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/lib/gbIgnore.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/lib/gbIndex.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/lib/gbLoadedTbl.c
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• src/hg/makeDb/genbank/src/lib/gbPipeline.c
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• src/hg/makeDb/genbank/src/lib/gbProcessed.c
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• src/hg/makeDb/genbank/src/lib/gbRelease.c
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• src/hg/makeDb/genbank/src/lib/gbSql.c
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• src/hg/makeDb/genbank/src/lib/gbStatusTbl.c
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• src/hg/makeDb/genbank/src/lib/gbUpdate.c
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• src/hg/makeDb/genbank/src/lib/gbVerb.c
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• src/hg/makeDb/genbank/src/lib/imageCloneTbl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/genbank/src/lib/mgcStatusTbl.c
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• src/hg/makeDb/genbank/src/lib/seqTbl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/genbank/src/lib/sqlDeleter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/genbank/src/lib/sqlUpdater.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/lib/uniqueStrTbl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/genbank/src/process/gbParse.c
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• src/hg/makeDb/genbank/src/process/gbParse.h
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• src/hg/makeDb/genbank/src/process/gbProcess.c
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• src/hg/makeDb/genbank/src/process/gbProcessedCheck.c
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• src/hg/makeDb/genbank/src/refSeqCheck/refSeqCheck.c
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• src/hg/makeDb/genbank/src/repair/refPepRepair.c
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• src/hg/makeDb/genbank/src/repair/refPepRepair.h
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• src/hg/makeDb/genbank/src/repair/repairExtFile.c
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• src/hg/makeDb/genbank/src/selectWithPsl/selectWithPsl.c
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• src/hg/makeDb/genbank/tests/gbFaCheck/gbFaCheck.c
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• src/hg/makeDb/genbank/tests/index/gbIndexTest.c
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• src/hg/makeDb/genbank/tests/subset/gbGetTestSubset.c
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• src/hg/makeDb/hgAddLiftOverChain/hgAddLiftOverChain.c
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• src/hg/makeDb/hgBbiDbLink/hgBbiDbLink.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgBedSources/hgBedSources.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgBedsToBedExps/bToBeCfg.c
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• src/hg/makeDb/hgBedsToBedExps/bToBeCfg.h
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• src/hg/makeDb/hgBedsToBedExps/hgBedsToBedExps.c
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• src/hg/makeDb/hgCalStat/hgCalStat.c
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• src/hg/makeDb/hgClonePos/gsSeqInfo.c
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• src/hg/makeDb/hgClonePos/hgClonePos.c
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• src/hg/makeDb/hgCountAlign/align.c
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• src/hg/makeDb/hgCountAlign/align.h
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• src/hg/makeDb/hgCountAlign/hgCountAlign.c
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• src/hg/makeDb/hgCountAlign/slidingWin.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/hgCountAlign/slidingWin.h
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• src/hg/makeDb/hgCountAlign/winCounts.c
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• src/hg/makeDb/hgCountAlign/winCounts.h
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• src/hg/makeDb/hgCtgPos/hgCtgPos.c
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• src/hg/makeDb/hgCtgPos/liftSpec.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgCutters/hgCutters.c
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• src/hg/makeDb/hgDeleteChrom/hgDeleteChrom.c
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• src/hg/makeDb/hgDropSplitTable/hgDropSplitTable.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgExperiment/hgExperiment.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgExtFileCheck/hgExtFileCheck.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgFakeAgp/hgFakeAgp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgFindSpec/hgFindSpec.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgGcPercent/hgGcPercent.c
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• src/hg/makeDb/hgGeneBands/hgGeneBands.c
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• src/hg/makeDb/hgGenericMicroarray/hgGenericMicroarray.c
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• src/hg/makeDb/hgGetKgUrls/hgGetKgUrls.c
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• src/hg/makeDb/hgGetNrOmimGene/hgGetNrOmimGene.c
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• src/hg/makeDb/hgGoldGapGl/hgGoldGapGl.c
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• src/hg/makeDb/hgGoldGapGl/hgLoadGap.c
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• src/hg/makeDb/hgGoldGapGl/ntContig.c
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• src/hg/makeDb/hgKgGetText/hgKgGetText.c
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• src/hg/makeDb/hgKgMrna/hgKgMrna.c
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• src/hg/makeDb/hgKnownMore.oo21/hgKnownMore.c
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• src/hg/makeDb/hgKnownMore.oo21/hugoMulti.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgKnownMore/hgKnownMore.c
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• src/hg/makeDb/hgKnownMore/hugoMulti.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgLoadAxt/hgLoadAxt.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgLoadBed/hgLoadBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/hgLoadBlastTab/hgLoadBlastTab.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/hgLoadCdsEvidence/hgLoadCdsEvidence.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgLoadChain/hgLoadChain.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgLoadChromGraph/hgLoadChromGraph.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgLoadGenePred/hgLoadGenePred.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgLoadItemAttr/hgLoadItemAttr.c
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• src/hg/makeDb/hgLoadMaf/hgLoadMaf.c
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• src/hg/makeDb/hgLoadMaf/hgLoadMafSummary.c
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• src/hg/makeDb/hgLoadMafFrames/hgLoadMafFrames.c
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• src/hg/makeDb/hgLoadNet/hgLoadNet.c
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• src/hg/makeDb/hgLoadOut/hgLoadOut.c
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• src/hg/makeDb/hgLoadOutJoined/hgLoadOutJoined.c
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• src/hg/makeDb/hgLoadPsl/hgLoadPsl.c
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• src/hg/makeDb/hgLoadSample/hgLoadSample.c
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• src/hg/makeDb/hgLoadSeq/hgLoadSeq.c
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• src/hg/makeDb/hgLoadSqlTab/hgLoadSqlTab.c
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• src/hg/makeDb/hgLoadWiggle/hgDumpWiggle.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/hgLoadWiggle/hgLoadWiggle.c
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• src/hg/makeDb/hgLoadWiggle/hgWiggle.c
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• src/hg/makeDb/hgLoadWiggle/wigEncode.c
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• src/hg/makeDb/hgMapMicroarray/hgMapMicroarray.c
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• src/hg/makeDb/hgMedianMicroarray/hgMedianMicroarray.c
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• src/hg/makeDb/hgMrnaRefseq/hgMrnaRefseq.c
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• src/hg/makeDb/hgNibSeq/hgNibSeq.c
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• src/hg/makeDb/hgPar/hgPar.c
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• src/hg/makeDb/hgPar/parSpec.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgPar/parSpec.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/hgPepPred/hgPepPred.c
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• src/hg/makeDb/hgRatioMicroarray/hgRatioMicroarray.c
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• src/hg/makeDb/hgRenameSplitTable/hgRenameSplitTable.c
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• src/hg/makeDb/hgRgdParsePathwayObo/hgRgdParsePathwayObo.c
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• src/hg/makeDb/hgSanger20/hgSanger20.c
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• src/hg/makeDb/hgSanger22/hgSanger22.c
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• src/hg/makeDb/hgStanfordMicroarray/hgStanfordMicroarray.c
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• src/hg/makeDb/hgStsAlias/hgStsAlias.c
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• src/hg/makeDb/hgStsMarkers/hgStsMarkers.c
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• src/hg/makeDb/hgTomRough/hgTomRough.c
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• src/hg/makeDb/hgTomRough/tomRough.c
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• src/hg/makeDb/hgTpf/hgTpf.c
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• src/hg/makeDb/hgTraceInfo/hgTraceInfo.c
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• src/hg/makeDb/hgTrackDb/hgTrackDb.c
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• src/hg/makeDb/hgWaba/hgWaba.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/htTpf/htTpf.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/ldHgGene/ldHgGene.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/mdbUpdate/mdbPrint.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/mdbUpdate/mdbUpdate.c
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• src/hg/makeDb/outside/allenBrain/allenCleanup/allenCleanup.c
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• src/hg/makeDb/outside/allenBrain/allenCollectSeq/allenCollectSeq.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/cgapSage/cgapSageBedAddFreqs/cgapSageBedAddFreqs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/cgapSage/cgapSageFind/cgapSageFind.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/cgapSage/cgapSageFind/cgapSageFind.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/cgapSage/cgapSageFind/uninteresting.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/exonerateGffDoctor/exonerateGffDoctor.c
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• src/hg/makeDb/outside/hgAvidShortBed/hgAvidShortBed.c
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• src/hg/makeDb/outside/hgBioCyc/hgBioCyc.c
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• src/hg/makeDb/outside/hgCGAP/hgCGAP.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/hgExonerate/hgExonerate.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/hgFiberglass/hgFiberglass.c
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• src/hg/makeDb/outside/hgFlyBase/hgFlyBase.c
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• src/hg/makeDb/outside/hgGnfMicroarray/hgGnfMicroarray.c
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• src/hg/makeDb/outside/hgGtex/hgGtex.c
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• src/hg/makeDb/outside/hgGtexAse/hgGtexAse.c
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• src/hg/makeDb/outside/hgGtexExonBed/hgGtexExonBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/hgGtexGeneBed/hgGtexGeneBed.c
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• src/hg/makeDb/outside/hgJaxQtl/hgJaxQtl.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/hgKegg/hgKegg.c
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• src/hg/makeDb/outside/hgKegg2/hgKegg2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/hgKegg3/hgKegg3.c
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• src/hg/makeDb/outside/hgLoadEranModules/esMotif.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/hgLoadEranModules/esMotif.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/hgLoadEranModules/hgLoadEranModules.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/hgLsSnpPdbLoad/hgLsSnpPdbLoad.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/hgPhMouse/hgPhMouse.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/hgRnaGenes/hgRnaGenes.c
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• src/hg/makeDb/outside/hgSoftPromoter/hgSoftPromoter.c
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• src/hg/makeDb/outside/hgSoftberryHom/hgSoftberryHom.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/hgSuperfam/hgSuperfam.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/nibb/nibbImageProbes/nibbImageProbes.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/nibb/nibbNameFix/nibbNameFix.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/nibb/nibbParseImageDir/nibbParseImageDir.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/nibb/nibbPrepImages/nibbPrepImages.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/samHit/samHit.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/sanger22gtf/sanger22gtf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/vegaBuildInfo/vegaBuildInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/yeast/checkSgdSync/checkSgdSync.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/outside/yeast/fixHarbisonMotifs/fixHarbisonMotifs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/yeast/hgSgdGff3/hgSgdGff3.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/yeast/hgSgdGfp/hgSgdGfp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/yeast/hgSgdPep/hgSgdPep.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/outside/yeast/hgYeastRegCode/hgYeastRegCode.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/schema/dbFindFieldsWith/dbFindFieldsWith.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/schema/dbSnoop/dbSnoop.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/schema/joinTwoInfo/joinTwoInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/schema/joinableFields/joinableFields.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/makeDb/schema/joinerCheck/joinerCheck.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/schema/joinerGraph/joinerGraph.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/schema/makeTableDescriptions/makeTableDescriptions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/scripts/variantsMuts/usherDescToBed
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    99acbcf9be0a3ba5974c153d54e021fd9eb9feda Thu Dec 2 07:44:49 2021 -0800
    adding makedoc for omicron mutations, refs #28579
• src/hg/makeDb/simpleGap/simpleGap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/tfbsConsLoc/matt-maf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/tfbsConsLoc/matt-maf.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/tfbsConsLoc/seq.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/tfbsConsLoc/seq.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/tfbsConsLoc/tfbsConsLoc.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/tfbsConsLoc/tfbsConsLoc.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/tfbsConsLoc/tfbsConsLocUtil.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/tfbsConsLoc/tfbsConsLocUtil.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/tfbsConsLoc/util.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/tfbsConsLoc/util.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/tfbsConsSort/tfbsConsSort.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/trackDb/human/bacEndPairs.html
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    d24488056e97caafed8c0197538106f8320401c5 Mon Nov 29 03:10:54 2021 -0800
    adding link to new company that sells the CHORI BACs, no redmine, phone call with Tacona Biosciences
• src/hg/makeDb/trackDb/human/caddSuper.html
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    9facdaf4266568200e1af151cf991e480044a2b8 Tue Nov 23 11:57:33 2021 -0800
    added some text at the request of anna. will let it go out with the next pushes of hg19 and hg38
• src/hg/makeDb/trackDb/human/hg38/tabulaSapiens.ra
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    7dc5c592016eec0058920fb4e9b596c221edea0b Wed Nov 24 14:13:44 2021 -0800
    Adding first cut of tabulaSapiens track.
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    2a0e085ee206ef0f9ee07af1b46e3ca90ccbbee0 Mon Nov 29 16:26:01 2021 -0800
    Updating colors and labels on Tabula sapiens. Adding tissue/cell_type substrack.
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
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    7dc5c592016eec0058920fb4e9b596c221edea0b Wed Nov 24 14:13:44 2021 -0800
    Adding first cut of tabulaSapiens track.
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    60eff7582a4de0728a2f2d7b9d1cd417502e8ed3 Wed Nov 24 14:36:10 2021 -0800
    Fix merge conflict from both adding new stuff at same place.
• src/hg/makeDb/trackDb/human/trackDb.clinvar.ra
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    3aac12402e976f74beef84827e0602ba7cc1cc58 Mon Nov 29 12:42:33 2021 -0800
    Fixing filters for clinvar SNV track, refs #28562
• src/hg/makeDb/trackDb/tagTypes.tab
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    2e691468956a0f59cefa252833af3db2638f02a1 Wed Dec 1 09:55:49 2021 -0800
    add speciesLabel to tagTypes.tab
• src/hg/makeDb/trackDb/trackDb.ra
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    1a36012f9f2eb9d087e503b1fd2c37f3a9adedfd Fri Nov 26 08:11:01 2021 -0800
    A major update for the UniProt otto job, refs #28560
• src/hg/makeDb/trackDb/uniprot.ra
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    1a36012f9f2eb9d087e503b1fd2c37f3a9adedfd Fri Nov 26 08:11:01 2021 -0800
    A major update for the UniProt otto job, refs #28560
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    bdc608599794265b358bd23b9dcfc00f89392923 Mon Nov 29 06:17:47 2021 -0800
    adding more colors to uniprot, refs #28560
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    2fe4f12161ca0be1920812033d25de23c45965d9 Mon Nov 29 07:52:31 2021 -0800
    adding colors to uniprot, after email from braney, refs #28560
• src/hg/makeDb/trackDb/uniprotAlpha.html
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    1a36012f9f2eb9d087e503b1fd2c37f3a9adedfd Fri Nov 26 08:11:01 2021 -0800
    A major update for the UniProt otto job, refs #28560
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    67ee4b34f8d2fe743e9a610158830ed1523716fe Thu Dec 2 00:52:01 2021 -0800
    more docs and color support for uniprot tracks, refs #28560
• src/hg/makeDb/trackDb/virus/wuhCor1/publicAnnots.html
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    2c6fec290ed5ed7204b9f0aee399be1c84de1f17 Tue Nov 23 07:54:52 2021 -0800
    docing switched off updates to public annots track on wuhCor1, no redmine, email from Lou and Braney
• src/hg/makeDb/trackDb/virus/wuhCor1/vaccines.ra
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    34eb77fe99350e98f03a6bca518e3a2146b77ae2 Thu Dec 2 13:14:27 2021 -0800
    added Moderna name to longLabel
• src/hg/makeDb/trackDb/virus/wuhCor1/variantMutsV2.html
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    efc54b6ae7a7e9fa7b328fee8aacd47accfb8316 Thu Dec 2 16:45:36 2021 -0800
    Updating track description and colors for addition of Omicron variant.
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    858e600c0303005f27f7be9717c7fb19e99e0361 Fri Dec 3 11:31:17 2021 -0800
    Releasing data for VOC refs #28579
• src/hg/makeDb/trackDb/virus/wuhCor1/variantMutsV2.ra
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    4383b303eb3e6fedb89bfc37b3cdd76ad761149b Thu Dec 2 07:35:40 2021 -0800
    adding Omicron mutations to wuhCor1, refs #28579
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    efc54b6ae7a7e9fa7b328fee8aacd47accfb8316 Thu Dec 2 16:45:36 2021 -0800
    Updating track description and colors for addition of Omicron variant.
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    858e600c0303005f27f7be9717c7fb19e99e0361 Fri Dec 3 11:31:17 2021 -0800
    Releasing data for VOC refs #28579
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    e3baff595cf1d0b7d9f830a1d834674b78c2cfc5 Fri Dec 3 11:44:57 2021 -0800
    Changes to label for omicron refs #28579
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    d782af440f50e3318d7fcfea54037581cac61856 Fri Dec 3 11:47:14 2021 -0800
    Pennant icon fix for omicron refs #28579
• src/hg/makeDb/trackDbPatch/trackDbPatch.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeDb/trackDbRaFormat/trackDbRaFormat.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/makeSeqs/makeSeqs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/maskOutFa/maskOutFa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mdToNcbiLift/mdToNcbiLift.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/monitor/cacti/cactiSine/cactiSine.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/afsCombine/afsCombine.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/aliFragScore/aliFragScore.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/axtChain/axtChain.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/axtDropOverlap/axtDropOverlap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/axtDropSelf/axtDropSelf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/axtFilter/axtFilter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/axtIndex/axtIndex.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/axtRecipBest/axtRecipBest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/axtRescore/axtRescore.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/axtSomeRecords/axtSomeRecords.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/axtSplitByTarget/axtSplitByTarget.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/axtSwap/axtSwap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/axtToMaf/axtToMaf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/bedCoverage/bedCoverage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/blastzPaper/blastzPaper.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/calcGap/calcGap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/chainAntiRepeat/chainAntiRepeat.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/chainCleaner/chainCleaner.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/chainDbToFile/chainDbToFile.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/chainFilter/chainFilter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/chainIndex/chainIndex.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/chainInfo/chainInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/chainInfo/chainInfo.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/chainMergeSort/chainMergeSort.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/chainNet/chainNet.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/chainOverlap/chainOverlap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/mouseStuff/chainPreNet/chainPreNet.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/mouseStuff/chainScore/chainScore.c
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• src/hg/mouseStuff/chainSort/chainSort.c
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• src/hg/mouseStuff/chainSplit/chainSplit.c
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• src/hg/mouseStuff/chainStitch/chainStitch.c
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• src/hg/mouseStuff/chainStitchId/chainStitchId.c
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• src/hg/mouseStuff/chainSwap/chainSwap.c
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• src/hg/mouseStuff/chainToAxt/chainToAxt.c
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• src/hg/mouseStuff/correctEst/correctEst.c
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• src/hg/mouseStuff/exonMap/exonMap.c
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• src/hg/mouseStuff/gcForBed/gcForBed.c
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• src/hg/mouseStuff/ggcPic/ggcPic.c
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• src/hg/mouseStuff/knownVsBlat/blatStats.c
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• src/hg/mouseStuff/knownVsBlat/blatStats.h
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• src/hg/mouseStuff/knownVsBlat/knownVsBlat.c
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• src/hg/mouseStuff/knownVsBlat/kvsSummary.c
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• src/hg/mouseStuff/lavToAxt/lavToAxt.c
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• src/hg/mouseStuff/lavToPsl/lavToPsl.c
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• src/hg/mouseStuff/libScan/libScan.c
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• src/hg/mouseStuff/mafCoverage/mafCoverage.c
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• src/hg/mouseStuff/mafFetch/mafFetch.c
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• src/hg/mouseStuff/mafRanges/mafRanges.c
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• src/hg/mouseStuff/mafToAxt/mafToAxt.c
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• src/hg/mouseStuff/mafToClustalw/mafToClustalw.c
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• src/hg/mouseStuff/mafToFa/mafToFa.c
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• src/hg/mouseStuff/mafToPsl/mafToPsl.c
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• src/hg/mouseStuff/mafToXmfa/mafToXmfa.c
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• src/hg/mouseStuff/mousePoster/mousePoster.c
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• src/hg/mouseStuff/netChainSubset/netChainSubset.c
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• src/hg/mouseStuff/netClass/netClass.c
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• src/hg/mouseStuff/netContigs/netContigs.c
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• src/hg/mouseStuff/netFilter/netFilter.c
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• src/hg/mouseStuff/netSplit/netSplit.c
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• src/hg/mouseStuff/netStats/netStats.c
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• src/hg/mouseStuff/netSyntenic/netSyntenic.c
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• src/hg/mouseStuff/netToAxt/netToAxt.c
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• src/hg/mouseStuff/netToBed/netToBed.c
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• src/hg/mouseStuff/netToBedWithId/netToBedWithId.c
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• src/hg/mouseStuff/orthologBySynteny/orthologBySynteny.c
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• src/hg/mouseStuff/phToPsl/phToPsl.c
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• src/hg/mouseStuff/pslMrnaCover/pslMrnaCover.c
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• src/hg/mouseStuff/regionPicker/regionPicker.c
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• src/hg/mouseStuff/rikenBestInCluster/rikenBestInCluster.c
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• src/hg/mouseStuff/simpleChain/simpleChain.c
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• src/hg/mouseStuff/splitSim/splitSim.c
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• src/hg/mouseStuff/subsetTraces/subsetTraces.c
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• src/hg/mouseStuff/whyConserved/trackOverlap.c
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• src/hg/mouseStuff/whyConserved/whyConserved.c
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• src/hg/mouseStuff/xmfaToMaf/xmfaToMaf.c
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• src/hg/mrnaToGene/mrnaToGene.c
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• src/hg/nci60/findStanAlignments.c
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• src/hg/nci60/stanToBedAndExpRecs.c
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• src/hg/near/hgCeOrfToGene/hgCeOrfToGene.c
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• src/hg/near/hgClusterGenes/hgClusterGenes.c
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• src/hg/near/hgEmblProtLinks/hgEmblProtLinks.c
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• src/hg/near/hgExpDistance/diffDistTables.c
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• src/hg/near/hgExpDistance/hgExpDistance.c
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• src/hg/near/hgExpDistance/hgExpDistance_fm.c
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• src/hg/near/hgExpDistance/hgExpDistance_fm_tm.c
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• src/hg/near/hgExpDistance/hgExpDistance_fq.c
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• src/hg/near/hgExpDistance/hgExpDistance_fq_tm.c
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• src/hg/near/hgExpDistance/hgExpDistance_tm.c
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• src/hg/near/hgExpDistance/hgMaxExp.c
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• src/hg/near/hgGoAssociation/hgGoAssociation.c
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• src/hg/near/hgKnownToSuper/hgKnownToSuper.c
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• src/hg/near/hgMapToGene/hgMapToGene.c
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• src/hg/near/hgMapViaSwissProt/hgMapViaSwissProt.c
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• src/hg/near/hgNear/advFilter.c
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• src/hg/near/hgNear/afiAli.c
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• src/hg/near/hgNear/association.c
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• src/hg/near/hgNear/colTemplate.c
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• src/hg/near/hgNear/configure.c
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• src/hg/near/hgNear/customColumn.c
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• src/hg/near/hgNear/examples.c
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• src/hg/near/hgNear/expRatio.c
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• src/hg/near/hgNear/flyBase.c
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• src/hg/near/hgNear/getSeq.c
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• src/hg/near/hgNear/go.c
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• src/hg/near/hgNear/hgNear.c
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• src/hg/near/hgNear/hgNear.h
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• src/hg/near/hgNear/intronSize.c
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• src/hg/near/hgNear/knownGene.c
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• src/hg/near/hgNear/order.c
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• src/hg/near/hgNear/pfam.c
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• src/hg/near/hgNear/search.c
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• src/hg/near/hgNear/userSettings.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/near/hgNearTest/hgNearTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/near/hgNetDist/hgLoadNetDist.c
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• src/hg/near/hgNetDist/hgNetDist.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/near/hgNetDist/hprdP2p.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/near/hgProtIdToGenePred/hgProtIdToGenePred.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/near/hgWormLinks/hgWormLinks.c
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• src/hg/near/hgZfishEnsXRef/hgEnsGeneXRef.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/near/hprdXmlToTab/hprd.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/near/hprdXmlToTab/hprd.h
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• src/hg/near/hprdXmlToTab/hprdXmlToTab.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/near/knownToHprd/knownToHprd.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/near/pepPredToFa/pepPredToFa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/oneShot/addChrPsl/addChrPsl.c
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• src/hg/oneShot/addMhcClones/addMhcClones.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/oneShot/addTopoToPrimers/addTopoToPrimers.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/oneShot/addUcscCopyright/addUcscCopyright.c
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• src/hg/oneShot/addUcscCopyright/freen.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/oneShot/affyAllExonGSColumn/affyAllExonGSColumn.c
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• src/hg/oneShot/agpAddCtgNamesAndGaps/agpAddCtgNamesAndGaps.c
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• src/hg/oneShot/agpNotInf/agpNotInf.c
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• src/hg/oneShot/agpVsMap/agpVsMap.c
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• src/hg/oneShot/bargeVsMap/bargeVsMap.c
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• src/hg/oneShot/bed15To3Col/bed15To3Col.c
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• src/hg/oneShot/bedFirstCodingExonSize/bedFirstCodingExonSize.c
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• src/hg/oneShot/blatFilter/blatFilter.c
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• src/hg/oneShot/bridgeDif/bridgeDif.c
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• src/hg/oneShot/bwTest/bwTest.c
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• src/hg/oneShot/bwTestRead/bwTestRead.c
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• src/hg/oneShot/cJoinX/cJoinX.c
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• src/hg/oneShot/cacheMergedRanges/cacheMergedRanges.c
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• src/hg/oneShot/cacheMergedRanges/rbmTree.c
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• src/hg/oneShot/cacheMergedRanges/rbmTree.h
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• src/hg/oneShot/cartSim/cartSim.c
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• src/hg/oneShot/cartSimNoInsert/cartSimNoInsert.c
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• src/hg/oneShot/chromPosLookup/chromPosLookup.c
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• src/hg/oneShot/chromToPos/chromToPos.c
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• src/hg/oneShot/clonePos/clonePos.c
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• src/hg/oneShot/clonesInAgp/clonesInAgp.c
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• src/hg/oneShot/clumpEst3/clumpEst3.c
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• src/hg/oneShot/cmpOverlaps/cmpOverlaps.c
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• src/hg/oneShot/codAbsAffyQuery/codAbsAffyQuery.c
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• src/hg/oneShot/compilerError/compilerError.c
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• src/hg/oneShot/createScaffoldsAgp/createScaffoldsAgp.c
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• src/hg/oneShot/demergeSingle/demergeSingle.c
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    57c27eb76af85e951c3586834eef4499f628ac5f Wed Nov 24 14:21:01 2021 -0800
    One shot self-imposed- data problem fixer. Nothing to see here.
• src/hg/oneShot/doEvoFold/doEvoFold.c
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• src/hg/oneShot/doEvoFoldV2/doEvoFoldV2.c
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• src/hg/oneShot/doOmimDisorders/doOmimDisorders.c
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• src/hg/oneShot/doRgdGene2/doRgdGene2.c
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• src/hg/oneShot/doRgdGene2UniProt/doRgdGene2UniProt.c
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• src/hg/oneShot/doRgdGene2Xref/doRgdGene2Xref.c
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• src/hg/oneShot/dupeFoo/dupeFoo.c
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• src/hg/oneShot/dupedInTable/dupedInTable.c
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• src/hg/oneShot/evalEndOverlaps/evalEndOverlaps.c
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• src/hg/oneShot/evalEndOverlaps/ocp.c
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• src/hg/oneShot/evalEnds/evalEnds.c
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• src/hg/oneShot/faFiltMasked/faFiltMasked.c
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• src/hg/oneShot/faTest/faTest.c
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• src/hg/oneShot/fakeBedGraph/fakeBedGraph.c
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• src/hg/oneShot/fakeChromGraph/fakeChromGraph.c
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• src/hg/oneShot/fakeHomozygousity/fakeHomozygousity.c
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• src/hg/oneShot/fakeLinkage/fakeLinkage.c
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• src/hg/oneShot/fakeSeqDiffs/fakeSeqDiffs.c
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• src/hg/oneShot/findContigsWithClones/findContigsWithClones.c
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• src/hg/oneShot/findToFixBedGraphLimits/findToFixBedGraphLimits.c
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• src/hg/oneShot/findToFixBedGraphViewLimits/findToFixBedGraphViewLimits.c
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• src/hg/oneShot/fixBlastTrack/fixBlastTrack.c
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• src/hg/oneShot/fixEnsGtf/fixEnsGtf.c
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• src/hg/oneShot/fixGdup/fixGdup.c
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• src/hg/oneShot/flagMhcClones/flagMhcClones.c
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• src/hg/oneShot/freen/freen.c
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    9bd482febef48bfcd97f2f06382170a47b21c4b8 Wed Nov 24 14:22:00 2021 -0800
    Freen tries to test the csv code.
• src/hg/oneShot/getHumanBrainRna/getHumanBrainRna.c
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• src/hg/oneShot/getRgdGeneCds/getRgdGeneCds.c
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• src/hg/oneShot/hgFreen/hgFreen.c
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• src/hg/oneShot/howBadNt/howBadNt.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/oneShot/hubTrackSettings/hubTrackSettings.c
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• src/hg/oneShot/jingTestFoo/jingTestFoo.c
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• src/hg/oneShot/joinToPatch/joinToPatch.c
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• src/hg/oneShot/kgName/fbName.c
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• src/hg/oneShot/kgName/kgName.c
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• src/hg/oneShot/kgName/sgName.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/oneShot/labSheet/labSheet.c
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• src/hg/oneShot/makeOrthoAtgTable/makeOrthoAtgTable.c
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• src/hg/oneShot/makeTrackDbTagVals/makeTrackDbTagVals.c
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• src/hg/oneShot/makeTrackDbTypeTags/makeTrackDbTypeTags.c
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• src/hg/oneShot/mapToSts/mapToSts.c
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• src/hg/oneShot/mhcToNt/mhcToNt.c
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• src/hg/oneShot/missingTable/missingTable.c
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• src/hg/oneShot/musAliAt/musAliAt.c
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• src/hg/oneShot/newClones/newClones.c
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• src/hg/oneShot/oo21Nts/oo21Nts.c
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• src/hg/oneShot/padFile/padFile.c
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• src/hg/oneShot/parseOmimDisorder/parseOmimDisorder.c
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• src/hg/oneShot/patchDir/patchDir.c
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• src/hg/oneShot/patchNtAgp/patchNtAgp.c
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• src/hg/oneShot/patchToAgp/patchToAgp.c
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• src/hg/oneShot/protDat/protDat.c
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• src/hg/oneShot/pslCut/pslCut.c
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• src/hg/oneShot/raPriority/raPriority.c
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• src/hg/oneShot/randomEst/randomEst.c
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• src/hg/oneShot/rangeGraph/rangeGraph.c
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• src/hg/oneShot/rangeGraph/rgi.c
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• src/hg/oneShot/rcvs/rcvs.c
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• src/hg/oneShot/rmDupCol1/rmDupCol1.c
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• src/hg/oneShot/rmFromFinf/rmFromFinf.c
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• src/hg/oneShot/roundNewViewLimitsInRa/roundNewViewLimitsInRa.c
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• src/hg/oneShot/sangPairs/sangPairs.c
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• src/hg/oneShot/seqFromPsl/seqFromPsl.c
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• src/hg/oneShot/somePsls/somePsls.c
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• src/hg/oneShot/spSize/spSize.c
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• src/hg/oneShot/spanRaft/spanRaft.c
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• src/hg/oneShot/splitNcbiFa/splitNcbiFa.c
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• src/hg/oneShot/tdbRewriteAddReplaces/tdbRewriteAddReplaces.c
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• src/hg/oneShot/tdbRewriteReduceReplaces/tdbRewriteReduceReplaces.c
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• src/hg/oneShot/tdbRewriteRemoveUnused/tdbRewriteRemoveUnused.c
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• src/hg/oneShot/tdbRewriteSortTags/tdbRewriteSortTags.c
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• src/hg/oneShot/tdbRewriteSubtrackToParent/tdbRewriteSubtrackToParent.c
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• src/hg/oneShot/tdbRewriteViewsToSubtracks/tdbRewriteViewsToSubtracks.c
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• src/hg/oneShot/tdbRewriteViewsToSubtracks1/tdbRewriteViewsToSubtracks1.c
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• src/hg/oneShot/tempLift/tempLift.c
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• src/hg/oneShot/tempLower/tempLower.c
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• src/hg/oneShot/testBb/testBb.c
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• src/hg/oneShot/testCart/cart.c
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• src/hg/oneShot/testCart/cart.h
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• src/hg/oneShot/testCart/testCart.c
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• src/hg/oneShot/testIndex/testIndex.c
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• src/hg/oneShot/testIntersect/testIntersect.c
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• src/hg/oneShot/testIxx/testIxx.c
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• src/hg/oneShot/testTableExists/testTableExists.c
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• src/hg/oneShot/testXap/testXap.c
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• src/hg/oneShot/tetDensity/tetDensity.c
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• src/hg/oneShot/tetFilter/tetFilter.c
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• src/hg/oneShot/timeGifPng/timeGifPng.c
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• src/hg/oneShot/timeMysqlHandler/timeMysqlHandler.c
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• src/hg/oneShot/transparentTriangleTest/transparentTriangleTest.c
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• src/hg/oneShot/trimFosmids/trimFosmids.c
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• src/hg/oneShot/tryNewColorOverlay/tryNewColorOverlay.c
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• src/hg/oneShot/weedKnownBlastTab/weedKnownBlastTab.c
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• src/hg/oneShot/weedTab/weedTab.c
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• src/hg/oneShot/wgEncodeRegGenRa/wgEncodeRegGenRa.c
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• src/hg/oneShot/wgEncodeRegTfbsDedupeHelp/wgEncodeRegTfbsDedupeHelp.c
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• src/hg/orthoMap/agxToIntronBeds.c
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• src/hg/orthoMap/bedToFrames.c
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• src/hg/orthoMap/mgcFastaForBed.c
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• src/hg/orthoMap/orthoEval.c
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• src/hg/orthoMap/orthoEval.h
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• src/hg/orthoMap/orthoEvaluate.c
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• src/hg/orthoMap/orthoMap.c
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• src/hg/orthoMap/orthoPickIntron.c
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• src/hg/patCount/patCount.c
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• src/hg/pdbSP/pdbSP.c
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• src/hg/perf/hgTracksRandom.c
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• src/hg/perf/rangeQuery.c
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• src/hg/phyloPng/phyloPng.c
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• src/hg/poster/finPoster/finPoster.c
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• src/hg/poster/foldDb/checkDupe/checkDupe.c
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• src/hg/poster/foldDb/foldDb.c
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• src/hg/poster/foldGfx/foldGfx.c
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• src/hg/protein/blastRecipBest/blastRecipBest.c
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• src/hg/protein/dv2/dv2.c
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• src/hg/protein/fixAgp/fixAgp.c
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• src/hg/protein/fixMd/fixMd.c
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• src/hg/protein/gadPos/gadPos.c
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• src/hg/protein/getInterProFa/getInterProFa.c
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• src/hg/protein/hmmPfamToTab/hmmPfamToTab.c
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• src/hg/protein/inc/pbCalPi.h
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• src/hg/protein/inc/pbStampPict.h
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• src/hg/protein/inc/pbTracks.h
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• src/hg/protein/inc/spKgMap.h
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• src/hg/protein/inc/spMapper.h
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• src/hg/protein/inc/uniref.h
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• src/hg/protein/inc/unirefTbl.h
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• src/hg/protein/kgAliasKgXref/kgAliasKgXref.c
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• src/hg/protein/kgAliasM/kgAliasM.c
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• src/hg/protein/kgAliasP/kgAliasP.c
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• src/hg/protein/kgAliasRefseq/kgAliasRefseq.c
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• src/hg/protein/kgAttachKegg/kgAttachKegg.c
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• src/hg/protein/kgBestMrna/kgPrepBestMrna.c
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• src/hg/protein/kgBestMrna/kgPrepBestMrna2.c
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• src/hg/protein/kgBestMrna/kgResultBestMrna.c
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• src/hg/protein/kgBestMrna2/kgPrepBestMrna2.c
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• src/hg/protein/kgBestMrna2/kgResultBestMrna2.c
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• src/hg/protein/kgBestRef2/kgPrepBestRef2.c
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• src/hg/protein/kgBestRef2/kgResultBestRef2.c
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• src/hg/protein/kgBioCyc0/kgBioCyc0.c
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• src/hg/protein/kgBioCyc1/kgBioCyc1.c
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• src/hg/protein/kgCheck/kgCheck.c
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• src/hg/protein/kgCheck2/kgCheck2.c
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• src/hg/protein/kgGetCds/kgGetCds.c
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• src/hg/protein/kgGetPep/kgGetPep.c
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• src/hg/protein/kgPepMrna/kgPepMrna.c
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• src/hg/protein/kgPick/kgPick.c
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• src/hg/protein/kgPick0/kgPickPrep.c
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• src/hg/protein/kgProtAlias/kgProtAlias.c
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• src/hg/protein/kgProtAliasNCBI/kgProtAliasNCBI.c
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• src/hg/protein/kgPutBack/kgPutBack.c
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• src/hg/protein/kgSelect/kgSelect.c
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• src/hg/protein/kgUniq/kgUniq.c
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• src/hg/protein/kgXref/kgXref.c
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• src/hg/protein/kgXref2/kgXref2.c
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• src/hg/protein/lib/doSam.c
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• src/hg/protein/lib/doStamps.c
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• src/hg/protein/lib/doTracks.c
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• src/hg/protein/lib/domains.c
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• src/hg/protein/lib/pbUtil.c
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• src/hg/protein/lib/spKgMap.c
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• src/hg/protein/lib/spMapper.c
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• src/hg/protein/lib/uniref.c
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• src/hg/protein/lib/unirefTbl.c
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• src/hg/protein/omimCheckAv/omimCheckAv.c
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• src/hg/protein/omimParseAv/omimParseAv.c
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• src/hg/protein/omimParseRec/omimParseRec.c
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• src/hg/protein/pbCalDist/pbCalDist.c
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• src/hg/protein/pbCalDistGlobal/pbCalDistGlobal.c
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• src/hg/protein/pbCalPi/pbCalPi.c
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• src/hg/protein/pbCalResStd/pbCalResStd.c
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• src/hg/protein/pbCalResStdGlobal/pbCalResStdGlobal.c
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• src/hg/protein/pbGateway/pbGateway.c
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• src/hg/protein/pbGlobal/pbGlobal.c
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• src/hg/protein/pbHgnc/pbHgnc.c
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• src/hg/protein/pbTracks/pbTracks.c
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• src/hg/protein/pfamToGoRdf/pfamToGoRdf.c
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• src/hg/protein/pfamToGoRdf/rdf.c
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• src/hg/protein/pfamToGoRdf/rdf.h
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• src/hg/protein/pfamXref/pfamXref.c
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• src/hg/protein/rmKGPepMrna/rmKGPepMrna.c
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• src/hg/protein/scopCollapse/scopCollapse.c
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• src/hg/protein/spDbAddVarSplice/spDbAddVarSplice.c
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• src/hg/protein/spLoadPsiBlast/spLoadPsiBlast.c
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• src/hg/protein/spLoadRankProp/rankPropProt.c
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• src/hg/protein/spLoadRankProp/rankPropProt.h
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• src/hg/protein/spLoadRankProp/spLoadRankProp.c
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• src/hg/protein/spOrganism/spOrganism.c
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• src/hg/protein/spTest/spTest.c
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• src/hg/protein/spToDb/spToDb.c
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• src/hg/protein/spToProteins/spToProteins.c
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• src/hg/protein/spToProteinsVar/spToProteinsVar.c
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• src/hg/protein/spToSpXref2/spToSpXref2.c
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• src/hg/protein/spXref2/spXref2.c
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• src/hg/protein/spXref3/spXref3.c
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• src/hg/protein/spm3/spm3.c
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• src/hg/protein/spm6/spm6.c
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• src/hg/protein/spm7/spm7.c
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• src/hg/pslAnal/pslAnal.c
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• src/hg/pslCDnaFilter/cDnaAligns.c
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• src/hg/pslCDnaFilter/cDnaAligns.h
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• src/hg/pslCDnaFilter/cDnaReader.c
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• src/hg/pslCDnaFilter/cDnaReader.h
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• src/hg/pslCDnaFilter/cDnaStats.c
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• src/hg/pslCDnaFilter/cDnaStats.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaFilter/globalNearBestFilter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaFilter/globalNearBestFilter.h
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    df64dbe534feb014891a42b81fd11b8f395ef881 Mon Nov 22 13:19:57 2021 -0800
    Fix missing extern declaration in pslCDnaFilter
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaFilter/hapRegions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaFilter/hapRegions.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaFilter/localNearBestFilter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaFilter/localNearBestFilter.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaFilter/overlapFilter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaFilter/overlapFilter.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaFilter/polyASize.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaFilter/polyASize.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaFilter/pslCDnaFilter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslCDnaGenomeMatch/pslCDnaGenomeMatch.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslMaxMap/pslMaxMap.c
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• src/hg/pslOneTwo/chainOneTwo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslOneTwo/pslOneTwo.c
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• src/hg/pslPairs/pslPairs.c
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• src/hg/pslPartition/pslPartition.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslPseudo/checkExp/checkExp.c
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• src/hg/pslQuickFilter/pslQuickFilter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/pslRecalcMatch/pslRecalcMatch.c
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• src/hg/pslSelect/pslSelect.c
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• src/hg/pslSimp/pslSimp.c
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• src/hg/pslSomeRecords/pslSomeRecords.c
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• src/hg/pslSortAcc/pslSortAcc.c
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• src/hg/pslSplit/pslSplit.c
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• src/hg/pslSplitOnTarget/pslSplitOnTarget.c
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• src/hg/pslStats/pslStats.c
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• src/hg/pslToBed/pslToBed.c
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• src/hg/pslToChain/pslToChain.c
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• src/hg/pslToFa/pslToFa.c
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• src/hg/pslToPileup/pslToPileup.c
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• src/hg/pslUnpile/pslUnpile.c
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• src/hg/pslxToFa/pslxToFa.c
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• src/hg/qa/apacheMonitor.c
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• src/hg/qa/checkCardinality.c
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• src/hg/qa/checkChain.c
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• src/hg/qa/countNib.c
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• src/hg/qa/dumpNib.c
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• src/hg/qa/gbSeqCheck.c
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• src/hg/qa/getChroms.c
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• src/hg/qa/reviewIndexes.c
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• src/hg/qa/seqCheck.c
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• src/hg/qa/testSearch.c
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• src/hg/qa/timePosTable.c
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• src/hg/qaAgpToQacIdx/qaAgpToQacIdx.c
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• src/hg/qaPushQ/qaPushQ.c
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• src/hg/qaToQac/qaToQac.c
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• src/hg/qacAddGapIdx/qacAddGapIdx.c
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• src/hg/qacAgpLift/qacAgpLift.c
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• src/hg/qacIndex/qacIndex.c
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• src/hg/qacToQa/qacToQa.c
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• src/hg/qacToWig/qacToWig.c
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• src/hg/randomPlacement/randomPlacement.c
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• src/hg/ratStuff/faToMaf/faToMaf.c
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• src/hg/ratStuff/mafAddIRows/mafAddIRows.c
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• src/hg/ratStuff/mafAddQRows/mafAddQRows.c
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• src/hg/ratStuff/mafBedSubset/mafBedSubset.c
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• src/hg/ratStuff/mafBreak/mafBreak.c
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• src/hg/ratStuff/mafFastFrags/mafFastFrags.c
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• src/hg/ratStuff/mafFilter/mafFilter.c
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• src/hg/ratStuff/mafFrag/mafFrag.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/ratStuff/mafFrags/mafFrags.c
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• src/hg/ratStuff/mafGene/mafGene.c
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• src/hg/ratStuff/mafIndex/mafIndex.c
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• src/hg/ratStuff/mafMeFirst/mafMeFirst.c
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• src/hg/ratStuff/mafOrder/mafOrder.c
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• src/hg/ratStuff/mafOrtholog/mafOrtholog.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/ratStuff/mafSpeciesList/mafSpeciesList.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/ratStuff/mafSpeciesSubset/mafSpeciesSubset.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ratStuff/mafSplit/mafSplit.c
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• src/hg/ratStuff/mafSplitPos/mafSplitPos.c
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• src/hg/ratStuff/mafStats/mafStats.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ratStuff/mafToAnc/mafToAnc.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ratStuff/mafToProtein/mafToProtein.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/ratStuff/mafsInRegion/mafsInRegion.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ratStuff/multizzy/multizzy.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ratStuff/segExpandToAnchors/segExpandToAnchors.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/ratStuff/segInfo/segInfo.c
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• src/hg/ratStuff/segSplitPairwise/segSplitPairwise.c
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• src/hg/ratStuff/stageMultiz/stageMultiz.c
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• src/hg/recycleDb/bedDown/bedDown.c
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• src/hg/recycleDb/bedUp/bedUp.c
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• src/hg/regulate/companion/regCompanion5C/regCompanion5C.c
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• src/hg/regulate/companion/regCompanionCalcBedGraphNorm/regCompanionCalcBedGraphNorm.c
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• src/hg/regulate/companion/regCompanionChia/regCompanionChia.c
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• src/hg/regulate/companion/regCompanionCorrelateEnhancerAndExpression/regCompanionCorrelateEnhancerAndExpression.c
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• src/hg/regulate/companion/regCompanionEnhProCellSpecificPairs/regCompanionEnhProCellSpecificPairs.c
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• src/hg/regulate/companion/regCompanionEntropy/regCompanionEntropy.c
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• src/hg/regulate/companion/regCompanionGraphVsFixedPoints/regCompanionGraphVsFixedPoints.c
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• src/hg/regulate/companion/regCompanionHistoneBox/regCompanionHistoneBox.c
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• src/hg/regulate/companion/regCompanionPickEnhancers/regCompanionPickEnhancers.c
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• src/hg/regulate/regBeadPos/regBeadPos.c
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• src/hg/regulate/regBedStats/regBedStats.c
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• src/hg/regulate/regChromiaMergeWindows/regChromiaMergeWindows.c
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• src/hg/regulate/regCluster/regCluster.c
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• src/hg/regulate/regClusterAttachMetadataToTableOfTables/regClusterAttachMetadataToTableOfTables.c
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• src/hg/regulate/regClusterBedExpCfg/regClusterBedExpCfg.c
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• src/hg/regulate/regClusterTreeCells/regClusterTreeCells.c
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• src/hg/regulate/regStartSampleEmbl/regStartSampleEmbl.c
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• src/hg/relPairs/relPairs.c
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• src/hg/rnaStructure/hgLoadRnaFold/hgLoadRnaFold.c
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• src/hg/rnaStructure/rnaFoldBig/rnaFoldBig.c
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• src/hg/rnaStructure/rnaPhylo/rnaPhylo.c
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• src/hg/rnaStructure/utrFa/utrFa.c
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• src/hg/rtdbWebUpdate/rtdbWebUpdate.c
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• src/hg/sage/addAveMedScoreToPsls.c
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• src/hg/sage/createSageSummary.c
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• src/hg/sageVisCGI/gnuPlot2D.c
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• src/hg/sageVisCGI/gnuPlot2D.h
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• src/hg/sageVisCGI/gnuplot_i.c
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• src/hg/sageVisCGI/gnuplot_i.h
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• src/hg/sageVisCGI/rosChr22Dat.c
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• src/hg/sageVisCGI/rosChr22Dat.h
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• src/hg/sageVisCGI/sageVisCGI.c
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• src/hg/scanRa/scanRa.c
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• src/hg/secure/secure.c
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• src/hg/semiNorm/semiNorm.c
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• src/hg/sim4big/sim4big.c
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• src/hg/snp/details/dbSnp.c
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• src/hg/snp/findSnpClusters/findSnpClusters.c
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• src/hg/snp/fixedDiffs/fixedDiffs.c
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• src/hg/snp/pbToAlleleCounts/pbToAlleleCounts.c
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• src/hg/snp/snpLoad/affyCheck.c
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• src/hg/snp/snpLoad/affyLookup.c
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• src/hg/snp/snpLoad/cnpLookup.c
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• src/hg/snp/snpLoad/fetchSeq.c
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• src/hg/snp/snpLoad/hapmap1.c
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• src/hg/snp/snpLoad/hapmap2.c
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• src/hg/snp/snpLoad/hapmapLookup.c
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• src/hg/snp/snpLoad/hapmapMixed.c
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• src/hg/snp/snpLoad/hapmapOrtho.c
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• src/hg/snp/snpLoad/hapmapPhaseIIISummary.c
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• src/hg/snp/snpLoad/hapmapSummary.c
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• src/hg/snp/snpLoad/hapmapValidate.c
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• src/hg/snp/snpLoad/illuminaLookup.c
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• src/hg/snp/snpLoad/illuminaLookup1M.c
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• src/hg/snp/snpLoad/illuminaLookup2.c
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• src/hg/snp/snpLoad/snpCheckAlleles.c
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• src/hg/snp/snpLoad/snpCheckClassAndObserved.c
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• src/hg/snp/snpLoad/snpCheckCluster.c
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• src/hg/snp/snpLoad/snpCheckCluster2.c
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• src/hg/snp/snpLoad/snpCheckLocTypeSize.c
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• src/hg/snp/snpLoad/snpClassAndObserved.c
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• src/hg/snp/snpLoad/snpCleanSeq.c
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• src/hg/snp/snpLoad/snpCompare.c
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• src/hg/snp/snpLoad/snpCompareLoctype.c
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• src/hg/snp/snpLoad/snpCompareWeight.c
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• src/hg/snp/snpLoad/snpContigLocFilter.c
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• src/hg/snp/snpLoad/snpContigLocFilter125.c
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• src/hg/snp/snpLoad/snpContigLocusIdCondense.c
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• src/hg/snp/snpLoad/snpContigLocusIdFilter.c
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• src/hg/snp/snpLoad/snpContigLocusIdFilter125.c
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• src/hg/snp/snpLoad/snpExceptionCheck.c
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• src/hg/snp/snpLoad/snpExceptions.c
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• src/hg/snp/snpLoad/snpExpandAllele.c
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• src/hg/snp/snpLoad/snpFinalTable.c
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• src/hg/snp/snpLoad/snpFreq.c
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• src/hg/snp/snpLoad/snpFunction.c
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• src/hg/snp/snpLoad/snpFunctionCheck.c
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• src/hg/snp/snpLoad/snpGetDeletions.c
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• src/hg/snp/snpLoad/snpGetInsertions.c
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• src/hg/snp/snpLoad/snpGetSeqDup.c
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• src/hg/snp/snpLoad/snpGetSimple.c
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• src/hg/snp/snpLoad/snpLoad.c
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• src/hg/snp/snpLoad/snpLoadFasta.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpLoadFromTmp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpLocType.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpLocType125.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpMissing.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpMoltype.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpMultiple.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpNcbiToUcsc.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpOrtho.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpOrthoJoin.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpOrthoLookup.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpOrthoStats.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpPAR.c
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• src/hg/snp/snpLoad/snpReadFasta.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpReadSeq.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpReadSeq2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpRefUCSC.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpSNP.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpSort.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpSplit.c
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• src/hg/snp/snpLoad/snpSplitByChrom.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/snpSplitByChrom2.c
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• src/hg/snp/snpLoad/snpSplitSimple.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/subSnpCondense.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpLoad/trimHeader.c
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• src/hg/snp/snpMask/seqWithInsertions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpMask/seqWithoutDeletions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpMask/snpMapToExon.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/snp/snpMask/snpMask.c
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• src/hg/snp/snpMask/snpMaskAddInsertions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpMask/snpMaskChrom.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/snp/snpMask/snpMaskCutDeletions.c
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• src/hg/snp/snpMask/snpMaskFlank.c
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• src/hg/snp/snpMask/snpMaskFlankSubset.c
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• src/hg/snp/snpMask/snpMaskGenes.c
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• src/hg/snp/snpMask/snpMaskSingle.c
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• src/hg/snp/snpValid/snpValid.c
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• src/hg/snp/snpValid/snpValidOld.c
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• src/hg/snp/tajD/tajD.c
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• src/hg/snpException/snpException.c
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• src/hg/spideyToPsl/spideyToPsl.c
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• src/hg/splignToPsl/splignToPsl.c
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• src/hg/splitFa/splitFa.c
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• src/hg/splitFaIntoContigs/splitFaIntoContigs.c
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• src/hg/synMap/createBinMap.c
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• src/hg/synMap/createSlamParaSpec.c
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• src/hg/synMap/prep_lc_rm_for_slam.c
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• src/hg/synMap/runSlam.c
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• src/hg/synMap/synMapTest.c
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• src/hg/test/foo.c
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• src/hg/test/otest/test1.c
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• src/hg/test/test.c
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• src/hg/trfBig/trfBig.c
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• src/hg/txCds/txCdsBadBed/txCdsBadBed.c
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• src/hg/txCds/txCdsCluster/txCdsCluster.c
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• src/hg/txCds/txCdsEvFromBed/txCdsEvFromBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txCds/txCdsEvFromBorf/txCdsEvFromBorf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txCds/txCdsEvFromProtein/txCdsEvFromProtein.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/txCds/txCdsEvFromRna/txCdsEvFromRna.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txCds/txCdsGoodBed/txCdsGoodBed.c
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• src/hg/txCds/txCdsOrfInfo/txCdsOrfInfo.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txCds/txCdsOrtho/txCdsOrtho.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txCds/txCdsPick/txCdsPick.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txCds/txCdsPredict/txCdsPredict.c
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• src/hg/txCds/txCdsRaExceptions/txCdsRaExceptions.c
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• src/hg/txCds/txCdsRedoUniprotPicks/txCdsRedoUniprotPicks.c
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• src/hg/txCds/txCdsRefBestEvOnly/txCdsRefBestEvOnly.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/txCds/txCdsRepick/txCdsRepick.c
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• src/hg/txCds/txCdsSuspect/txCdsSuspect.c
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• src/hg/txCds/txCdsSvmInput/txCdsSvmInput.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/txCds/txCdsToGene/txCdsToGene.c
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• src/hg/txCds/txCdsWeed/txCdsWeed.c
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• src/hg/txCds/txInfoAssemble/txInfoAssemble.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGene/txGeneAccession/txGeneAccession.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGene/txGeneAddOldUnmapped/txGeneAddOldUnmapped.c
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• src/hg/txGene/txGeneAlias/txGeneAlias.c
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• src/hg/txGene/txGeneAltProt/txGeneAltProt.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGene/txGeneCanonical/txGeneCanonical.c
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• src/hg/txGene/txGeneCdsMap/txGeneCdsMap.c
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• src/hg/txGene/txGeneColor/txGeneColor.c
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• src/hg/txGene/txGeneExplainUpdate1/txGeneExplainUpdate1.c
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• src/hg/txGene/txGeneExplainUpdate2/txGeneExplainUpdate2.c
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• src/hg/txGene/txGeneFromBed/txGeneFromBed.c
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• src/hg/txGene/txGeneProtAndRna/txGeneProtAndRna.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGene/txGeneSeparateNoncoding/txGeneSeparateNoncoding.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGene/txGeneXref/txGeneXref.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/agxToTxg/agxToTxg.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/bedToTxEdges/bedToTxEdges.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txAbFragFind/txAbFragFind.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txBedToGraph/makeGraph.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txBedToGraph/txBedToGraph.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txBedToGraph/txBedToGraph.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txOrtho/txOrtho.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txPslFilter/txPslFilter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txPslToBed/txPslToBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txReadRa/txReadRa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txWalk/txWalk.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txgAddEvidence/txgAddEvidence.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txgAnalyze/txgAnalyze.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txgGoodEdges/txgGoodEdges.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txgToAgx/txgToAgx.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txgToXml/txgToXml.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txGraph/txgTrim/txgTrim.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txPaper/txGeneBakeOff/refCluster.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txPaper/txGeneBakeOff/refCluster.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txPaper/txGeneBakeOff/txGeneBakeOff.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txPaper/txPaperPfam/txPaperPfam.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/txPaper/txPaperScop/txPaperScop.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ultras/plateOfPrimers/plateOfPrimers.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ultras/regionToPrimer3/regionToPrimer3.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ultras/sqlAddCol/sqlAddCol.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ultras/ultraDb/as/udHistory.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ultras/ultraDb/as/udHistory.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ultras/ultraPcrRegions/ultraPcrRegions.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/ultras/ultraPlateau/ultraPlateau.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/uniqSize/uniqSize.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/updateStsInfo/updateStsInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/useCount/useCount.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/agpCondense/agpCondense.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/automation/asmHubChainNetTrackDb.pl
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    c8bcd3174e6625afbd8e6b0039f1077afb2b6391 Fri Dec 3 14:24:31 2021 -0800
    fixup incorrect shortLabel on RBest Chain no redmine
• src/hg/utils/automation/doAssemblyHub.pl
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    a8a20738a644d24872835b8ef5e0d9608bdd3bdf Wed Dec 1 15:40:57 2021 -0800
    do not fail on empty genePred for ncbiGene no redmine
• src/hg/utils/automation/doCpgIslands.pl
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    8dddffded74dff5108fa03a4e64d7e9f4040cd47 Tue Nov 23 07:24:49 2021 -0800
    fixup bcsh->bash script name refs #28457
• src/hg/utils/automation/doXenoRefGene.pl
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    0c48fdb70c330626acba56d84e4c4a48b8964693 Thu Dec 2 11:40:57 2021 -0800
    large performance improvement, better splitting procedure and smaller cluster batch sizes for high contig count assemblies no redmine
• src/hg/utils/bedExtendRanges/bedExtendRanges.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/bedMergeExpData/bedMergeExpData.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/bedMergeOverlappingBlocks/bedMergeOverlappingBlocks.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/bedPartition/bedPartition.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/bedRandom/bedRandom.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/bedToPsl/bedToPsl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/bedWeedOverlapping/bedWeedOverlapping.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/blatServersCheck/blatServersCheck.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/cageSingleTrack/cageSingleTrack.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/checkStaticHtmlLinks/checkStaticHtmlLinks.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/checkUrlsInTable/checkUrlsInTable.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/chromGraphFromBin/chromGraphFromBin.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/chromGraphToBin/chromGraphToBin.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/coloredExonToBed/coloredExon.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/coloredExonToBed/coloredExon.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/coloredExonToBed/coloredExonToBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/crTreeIndexBed/crTreeIndexBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/crTreeSearchBed/crTreeSearchBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/findCutters/findCutters.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/fiveCToBed/fiveCToBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/gapToLift/gapToLift.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/genePredFilter/genePredFilter.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/geoMirrorNode/geoMirrorNode.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/gff3ToPsl/gff3ToPsl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/gffToBed/gffToBed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/gtfToGenePred/gtfToGenePred.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/hgvsToVcf/hgvsToVcf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/hubCheck/hubCheck.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
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    cf09d38904dd6b0333eb2369d8f84c3ee6478450 Tue Nov 23 23:35:32 2021 -0800
    Since IP addresses are automatically whitelisted and no cert verify takes place, we no longer need them. Also added a useful option for controlling the hardwired whitelist for hubCheck.
• src/hg/utils/hubCrawl/hubCrawl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/hubPublicCheck/hubPublicCheck.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/hubToMetaRa/hubToMetaRa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/interactFixRanges/interactFixRanges.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/liftUpBedFromTable/liftUpBedFromTable.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/lrgToPsl/lrgToPsl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/makeTableList/makeTableList.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/makeTrackIndex/makeTrackIndex.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/mdbQuery/mdbQuery.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/motifFinder/motifFinder.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/mutationClassifier/mutationClassifier.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/mysqlSecurityCheck/mysqlSecurityCheck.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/oligoMatch/oligoMatch.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/otto/geneReviews/geneReviewsWrapper.sh
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    b139dda391e1a574b1f67e7b0db0c21fb1aa8c7f Wed Nov 24 09:25:00 2021 -0800
    Removing extra whitespace.
• src/hg/utils/otto/grcIncident/README.txt
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    1e87a5e306cb4602fb6781077be0265db2d58c4f Wed Dec 1 11:29:46 2021 -0800
    update scripts for new location refs #28331
• src/hg/utils/otto/grcIncident/grcUpdate.sh
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    1e87a5e306cb4602fb6781077be0265db2d58c4f Wed Dec 1 11:29:46 2021 -0800
    update scripts for new location refs #28331
• src/hg/utils/otto/grcIncident/runUpdate.sh
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    1e87a5e306cb4602fb6781077be0265db2d58c4f Wed Dec 1 11:29:46 2021 -0800
    update scripts for new location refs #28331
• src/hg/utils/otto/grcIncident/verifyTransfer.sh
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    1e87a5e306cb4602fb6781077be0265db2d58c4f Wed Dec 1 11:29:46 2021 -0800
    update scripts for new location refs #28331
• src/hg/utils/otto/ncbiRefSeq/README.txt
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    2ec1b855bf15da994b011482b39f7a4306dc84a1 Wed Dec 1 12:12:56 2021 -0800
    update to run from /hive/data/outside/otto/ncbiRefSeq/ refs #28331
• src/hg/utils/otto/ncbiRefSeq/ottoNcbiRefSeq.sh
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    2ec1b855bf15da994b011482b39f7a4306dc84a1 Wed Dec 1 12:12:56 2021 -0800
    update to run from /hive/data/outside/otto/ncbiRefSeq/ refs #28331
• src/hg/utils/otto/ncbiRefSeq/prevHg38.sum
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    d20db35e0061e340168b2457d66dbae67db49437 Wed Dec 1 12:32:01 2021 -0800
    hg38 updated during testing refs #28331
• src/hg/utils/otto/ncbiRefSeq/runHg19.sh
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    2ec1b855bf15da994b011482b39f7a4306dc84a1 Wed Dec 1 12:12:56 2021 -0800
    update to run from /hive/data/outside/otto/ncbiRefSeq/ refs #28331
• src/hg/utils/otto/ncbiRefSeq/runHg38.sh
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    2ec1b855bf15da994b011482b39f7a4306dc84a1 Wed Dec 1 12:12:56 2021 -0800
    update to run from /hive/data/outside/otto/ncbiRefSeq/ refs #28331
• src/hg/utils/otto/ncbiRefSeq/runMm10.sh
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    2ec1b855bf15da994b011482b39f7a4306dc84a1 Wed Dec 1 12:12:56 2021 -0800
    update to run from /hive/data/outside/otto/ncbiRefSeq/ refs #28331
• src/hg/utils/otto/ncbiRefSeq/runMm39.sh
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    2ec1b855bf15da994b011482b39f7a4306dc84a1 Wed Dec 1 12:12:56 2021 -0800
    update to run from /hive/data/outside/otto/ncbiRefSeq/ refs #28331
• src/hg/utils/otto/ncbiRefSeq/runUcscDb.sh
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    2ec1b855bf15da994b011482b39f7a4306dc84a1 Wed Dec 1 12:12:56 2021 -0800
    update to run from /hive/data/outside/otto/ncbiRefSeq/ refs #28331
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    e73767fd1017611f858e067f55f3557a99f983f4 Wed Dec 1 12:28:40 2021 -0800
    adding Lou email for the notices refs #28331
• src/hg/utils/otto/omim/doOmimAv/doOmimAv.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/otto/omim/doOmimGene2/doOmimGene2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/otto/omim/doOmimGeneSymbols/doOmimGeneSymbols.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/otto/omim/doOmimLocation/doOmimLocation.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/otto/otto.crontab
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    1007ba96f7db2b19a2e7ed36a9edc57f6c8f2c95 Fri Nov 19 17:33:04 2021 -0800
    Organizing and officially moving the otto crontab to the otto user, refs #28331
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    85404ab870a622df6d153fcbfbd96a9f7cd668f4 Mon Nov 22 12:21:02 2021 -0800
    Removing the user annotations track, which we no longer update. No RM - convo with Braney and Max
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    60eff7582a4de0728a2f2d7b9d1cd417502e8ed3 Wed Nov 24 14:36:10 2021 -0800
    Fix merge conflict from both adding new stuff at same place.
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    4ad6716ea97ca0d9907dae65ed79d44bd415594b Mon Nov 29 16:19:52 2021 -0800
    Resorting the crontab file that got squashed in a merge conflict, and moving OMIM upload to bottom for different conf settings. No RM.
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    371a636b6cf6c5c48f41be953541a62eea58db84 Wed Dec 1 11:31:37 2021 -0800
    grcIncident seems to be working OK refs #28331
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    ccb2746595a0661a942db277329de7d3fbfdd80a Wed Dec 1 12:34:15 2021 -0800
    turning on ncbiRefSeq job refs #28331
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    00317dd1aa0566cb568273396cf1ff0576e501c6 Wed Dec 1 13:30:07 2021 -0800
    Decommissioning the user annotation update, confirmed by Braney and Max. No RM.
• src/hg/utils/otto/sarscov2phylo/extractPublicTree.sh
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    d74f464864e06a125090ce91540e63f46791b4df Mon Nov 29 16:30:48 2021 -0800
    Filter on --max-parsimony after usher run; increase --max-branch-length to 45 to accommodate highly diverged B.1.1.5289/Omicron and add --max-path-length 100 to filter out sequences with a (currently) ridiculous amount of divergence. Annotate Nextstrain clades from nextstrain.clade-mutations.tsv only, no sample-name input. Error out if $prevDate/lineageToName isn't available. Add Pango lineage from tree to Taxonium protobuf output.
• src/hg/utils/otto/sarscov2phylo/makeNewMaskedVcf.sh
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    fd84fe49fb0697a08c40b8cdbd1b4b003c06330b Mon Nov 29 12:59:31 2021 -0800
    Now that Problematic Sites track has been updated, no need to patch in masking of site 21987 (S:142).
• src/hg/utils/otto/sarscov2phylo/maskDelta.sh
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    cabd81a0d3b5aecaa7ebc0f7ed86dd541c5330f4 Mon Nov 29 16:13:42 2021 -0800
    Mask deleted bases (and adjacent bases) in the Delta branch to avoid bogus reported SNVs at those locations from erroneous genome assembly pipelines.
• src/hg/utils/otto/sarscov2phylo/nextstrain.clade-mutations.tsv
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    f07eefd7ea1688dfaed14d5860f5663164ecc49c Mon Nov 29 12:55:16 2021 -0800
    Added Nextstrain clades 21I and 21J (Delta sub-clades) and 21K (Omicron). Lots of Ns in 21K path to accommodate sequences with ref-backfilling issues. Also added spaces back to clade names.
• src/hg/utils/otto/sarscov2phylo/pango.clade-mutations.tsv
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    c2fa355ce4dc6f3026a6bfa5a73b910f91c21c45 Wed Nov 17 18:11:38 2021 -0800
    Added AY.122 and renamed AY.12 to AY.122.1 (v1.2.95). Added AY.20.1 and AY.43.{1,2} (v1.2.96). Masked to N bases in regions masked by pangolin but not Problematic Sites (56-265, 29674-29803) so the same file can be used for both full UShER tree and pangolin lineageTree.pb.
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    c53f840e529dc2b335da26189e25059a78d1d712 Mon Nov 29 12:54:18 2021 -0800
    Fixed incorrect path for AY.113. Added new lineages from pango-designation v1.2.98-v1.2.102, including B.1.1.529 (Omicron) for which a lot of sites are N to accommodate sequences with ref-backfilling issues.
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    daffd6b566cb5ba1182be543fe0890c679cce99f Mon Nov 29 15:48:14 2021 -0800
    Added new lineages from pango-designation v1.2.103 (AY.34.1 broadened, new AY.34.1.1 is old AY.34.1).
• src/hg/utils/otto/sarscov2phylo/updateCombinedTree.sh
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    d74f464864e06a125090ce91540e63f46791b4df Mon Nov 29 16:30:48 2021 -0800
    Filter on --max-parsimony after usher run; increase --max-branch-length to 45 to accommodate highly diverged B.1.1.5289/Omicron and add --max-path-length 100 to filter out sequences with a (currently) ridiculous amount of divergence. Annotate Nextstrain clades from nextstrain.clade-mutations.tsv only, no sample-name input. Error out if $prevDate/lineageToName isn't available. Add Pango lineage from tree to Taxonium protobuf output.
• src/hg/utils/otto/sarscov2phylo/updateIdMapping.sh
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    4cd889af96dc4c76645d5b3357e47437917bd8e7 Mon Nov 29 15:58:27 2021 -0800
    Make hardcoded path more explicit -- it's my ~/ not just anybody's.
• src/hg/utils/otto/sarscov2phylo/updateLineageTreePb.sh
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    d1ab093492f89b1fe6130371898d1ac2d47ee85d Mon Nov 29 15:56:05 2021 -0800
    Reroot to lineage A internal node, not leaf sequence. Mask entire untranslated beginning & end of genome like Pangolin does.
• src/hg/utils/otto/sarscov2phylo/updatePublic.sh
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    41b65f6c5dd2d79bf2d959abfa8bfa82529d649b Mon Nov 29 15:57:11 2021 -0800
    After completion, grep for signs of trouble when annotating clades & lineages.
• src/hg/utils/otto/sarscov2phylo/usherClusterRun.sh
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    76a146dfad5565271b6e29b35ec1ae136fc422aa Mon Nov 29 16:19:01 2021 -0800
    Run and merge 32 usher jobs instead of 16. Don't apply --max-parsimony within usher (too harsh, new highly diverged clusters can't get a foot in the door), leave for post-filtering. Increase para -ram limit. Call maskDelta.sh after merge and before matOptimize. Construct hostfile with only one line per host.
• src/hg/utils/otto/uniprot/README.txt
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    1a36012f9f2eb9d087e503b1fd2c37f3a9adedfd Fri Nov 26 08:11:01 2021 -0800
    A major update for the UniProt otto job, refs #28560
• src/hg/utils/otto/uniprot/bigPslUniprot.as
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    1a36012f9f2eb9d087e503b1fd2c37f3a9adedfd Fri Nov 26 08:11:01 2021 -0800
    A major update for the UniProt otto job, refs #28560
• src/hg/utils/otto/uniprot/doUniprot
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    1a36012f9f2eb9d087e503b1fd2c37f3a9adedfd Fri Nov 26 08:11:01 2021 -0800
    A major update for the UniProt otto job, refs #28560
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    67ee4b34f8d2fe743e9a610158830ed1523716fe Thu Dec 2 00:52:01 2021 -0800
    more docs and color support for uniprot tracks, refs #28560
• src/hg/utils/otto/uniprot/makeUniProtPsl.sh
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    1a36012f9f2eb9d087e503b1fd2c37f3a9adedfd Fri Nov 26 08:11:01 2021 -0800
    A major update for the UniProt otto job, refs #28560
• src/hg/utils/otto/uniprot/pslProtCnv
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    1a36012f9f2eb9d087e503b1fd2c37f3a9adedfd Fri Nov 26 08:11:01 2021 -0800
    A major update for the UniProt otto job, refs #28560
• src/hg/utils/overlapSelect/chromAnn.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/overlapSelect/chromAnn.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/overlapSelect/chromAnnMap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/overlapSelect/chromAnnMap.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/overlapSelect/coordCols.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/overlapSelect/coordCols.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/overlapSelect/overlapSelect.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/overlapSelect/rowReader.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/overlapSelect/rowReader.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/overlapSelect/selectTable.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/overlapSelect/selectTable.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/positionalTblCheck/positionalTblCheck.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/pslLiftSubrangeBlat/pslLiftSubrangeBlat.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/pslUniq/pslUniq.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/raSqlQuery/raRecord.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/raSqlQuery/raRecord.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/raSqlQuery/raSqlQuery.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/randFrag/randFrag.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/reTraceUtils/reTraceFixMaf/reTraceFixMaf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/refSeqGet/refSeqGet.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/refSeqGet/refSeqVerInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/refSeqGet/refSeqVerInfo.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/repeatSelect/bitHash.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/repeatSelect/bitHash.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/repeatSelect/repeatGroup.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/repeatSelect/repeatGroup.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/repeatSelect/repeatSelect.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/repeatSelect/rmskOutExtra.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/repeatSelect/rmskOutExtra.h
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• src/hg/utils/rgdGeneXref2/rgdGeneXref2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/safePush/safePush.c
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• src/hg/utils/scaffoldFaToAgp/scaffoldFaToAgp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/sqlPerf/sqlPerf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/tdbQuery/tdbQuery.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/tdbQuery/tdbRecord.c
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• src/hg/utils/tdbQuery/tdbRecord.h
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/utils/toDev64/toDev64.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/utils/transMapPslToGenePred/transMapPslToGenePred.c
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• src/hg/utils/trashLoad/trashLoad.c
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• src/hg/utils/twoBitMask/twoBitMask.c
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• src/hg/utils/vcfToHgvs/vcfToHgvs.c
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• src/hg/utils/wigAsciiAverageOverBed/wigAsciiAverageOverBed.c
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• src/hg/utils/wigBedToStep/wigBedToStep.c
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• src/hg/var/fixConrad.c
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• src/hg/visiGene/gensat/gensatFixFull/gensatFixFull.c
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• src/hg/visiGene/gensat/gensatFtpImages/gensatFtpImages.c
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• src/hg/visiGene/gensat/gensatFtpList/gensatFtpList.c
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• src/hg/visiGene/gensat/gensatImageDownload/gensatImageDownload.c
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• src/hg/visiGene/gensat/gensatRandomXml/gensatRandomXml.c
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• src/hg/visiGene/gensat/lib/gs.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/visiGene/gensat/lib/gs.h
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• src/hg/visiGene/gensat/vgLoadGensat/vgLoadGensat.c
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• src/hg/visiGene/hgVisiGene/captionElement.c
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• src/hg/visiGene/hgVisiGene/captionElement.h
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• src/hg/visiGene/hgVisiGene/configPage.c
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• src/hg/visiGene/hgVisiGene/configPage.h
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• src/hg/visiGene/hgVisiGene/fullTextExperiment.c
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• src/hg/visiGene/hgVisiGene/hgVisiGene.c
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• src/hg/visiGene/hgVisiGene/hgVisiGene.h
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• src/hg/visiGene/hgVisiGene/printCaption.c
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• src/hg/visiGene/hgVisiGene/printCaption.h
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• src/hg/visiGene/hgVisiGene/probePage.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/visiGene/hgVisiGene/probePage.h
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• src/hg/visiGene/hgVisiGene/testVisiSearch.c
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• src/hg/visiGene/hgVisiGene/visiSearch.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/visiGene/hgVisiGene/visiSearch.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/visiGene/jackson/mysqlEscape/mysqlEscape.c
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• src/hg/visiGene/knownToVisiGene/knownToVisiGene.c
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• src/hg/visiGene/vgChangeContributors/vgChangeContributors.c
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• src/hg/visiGene/vgGetText/vgGetText.c
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• src/hg/visiGene/vgGetText/visiGene.c
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• src/hg/visiGene/vgGetText/visiGene.h
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• src/hg/visiGene/vgLoadAllen/vgLoadAllen.c
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• src/hg/visiGene/vgLoadJax/vgLoadJax.c
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• src/hg/visiGene/vgLoadMahoney/mahoney.c
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• src/hg/visiGene/vgLoadMahoney/mahoney.h
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• src/hg/visiGene/vgLoadMahoney/vgLoadMahoney.c
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• src/hg/visiGene/vgLoadNibb/vgLoadNibb.c
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• src/hg/visiGene/vgPatchJax/vgPatchJax.c
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• src/hg/visiGene/vgPrepImage/jp2Dec.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/visiGene/vgPrepImage/jp2Dec.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/visiGene/vgPrepImage/jpgDec.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/visiGene/vgPrepImage/jpgDec.h
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• src/hg/visiGene/vgPrepImage/jpgTiles.c
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• src/hg/visiGene/vgPrepImage/jpgTiles.h
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• src/hg/visiGene/vgPrepImage/jpgTilesX.h
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• src/hg/visiGene/vgPrepImage/vgPrepImage.c
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• src/hg/visiGene/vgProbeTrack/vgPrb.h
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• src/hg/visiGene/vgProbeTrack/vgPrbAli.h
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• src/hg/visiGene/vgProbeTrack/vgPrbAliAll.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/hg/visiGene/vgProbeTrack/vgPrbMap.h
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• src/hg/visiGene/vgProbeTrack/vgProbeTrack.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/hg/visiGene/vgRemoveSubmission/vgRemoveSubmission.c
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• src/hg/visiGene/visiGeneLoad/visiGeneLoad.c
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• src/hg/visiGene/visiGeneSearch/visiGeneSearch.c
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• src/hg/visiGene/visiGeneTest/visiGeneTest.c
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• src/hg/wikiPlot/wikiPlot.c
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• src/hg/xmlCat/xmlCat.c
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• src/hg/xmlToSql/elStat.h
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• src/hg/xmlToSql/rename.h
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• src/hg/xmlToSql/tables.h
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• src/hg/zfishBacClonesandSts/zfishBacClonesandSts.c
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• src/hg/zoo/analyze4d/analyze.c
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• src/hg/zoo/inc/args.h
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• src/hg/zoo/inc/read_malign.h
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• src/hg/zoo/inc/util.h
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• src/hg/zoo/pslToFa/pslToFa.c
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• src/hg/zoo/pslUnpackBlocks/pslUnpackBlocks.c
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• src/hg/zoo/zooLib/args.c
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• src/hg/zoo/zooLib/read_malign.c
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• src/hg/zoo/zooLib/util.c
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• src/inc/common.mk
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
• src/inc/htmlColor.h
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• src/inc/longTabix.h
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• src/inc/obscure.h
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    080aff3c9de71d3a3ca71a0ae1bf758fe3d60208 Wed Nov 24 14:15:48 2021 -0800
    Adding dotForUserEnd() function to help avoid unclosed lines of dots.
• src/inc/srcVersion.h
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    9b267b40b1b9a6818886f2b51cf9d69b0e8b7d9e Mon Dec 6 10:20:29 2021 -0800
    New version number v424
• src/inc/windowsToAscii.h
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• src/isPcr/LICENSE
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    f3ea91ffb3854301e53d2cd7e125c56d168adc3c Mon Nov 22 11:12:37 2021 -0800
    more fixes on the license files after talking to Jim on the phone, refs #27614
• src/kehayden/alphaChain/alphaChain.c
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• src/kehayden/learningLibs/learningLibs.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/kehayden/linearSat/linearSat.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/kehayden/reverseCenReads/reverseCenReads.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/kehayden/tokenizerLib/tokenizerLib.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/lib/aliType.c
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• src/lib/annoAssembly.c
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• src/lib/annoFilter.c
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• src/lib/annoFormatTab.c
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• src/lib/annoFormatter.c
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• src/lib/annoGrateWig.c
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• src/lib/annoGrator.c
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• src/lib/annoGratorQuery.c
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• src/lib/annoOption.c
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• src/lib/annoRow.c
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• src/lib/annoStreamBigBed.c
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• src/lib/annoStreamBigWig.c
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• src/lib/annoStreamLongTabix.c
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• src/lib/annoStreamTab.c
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• src/lib/annoStreamVcf.c
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• src/lib/annoStreamer.c
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• src/lib/apacheLog.c
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• src/lib/asParse.c
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• src/lib/aveStats.c
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• src/lib/bPlusTree.c
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• src/lib/bamFile.c
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• src/lib/base64.c
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• src/lib/basicBed.c
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• src/lib/bbiRead.c
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• src/lib/bbiWrite.c
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• src/lib/bigBed.c
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• src/lib/blastOut.c
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• src/lib/blastParse.c
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• src/lib/boxClump.c
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• src/lib/boxLump.c
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• src/lib/bwgCreate.c
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• src/lib/bwgQuery.c
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• src/lib/bwgValsOnChrom.c
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• src/lib/chain.c
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• src/lib/chainBlock.c
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• src/lib/chainConnect.c
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• src/lib/chainToAxt.c
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• src/lib/chainToPsl.c
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• src/lib/cirTree.c
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• src/lib/colHash.c
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• src/lib/colHash.h
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• src/lib/correlate.c
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• src/lib/crTree.c
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• src/lib/dgRange.c
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• src/lib/dnaLoad.c
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• src/lib/dnaMarkov.c
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• src/lib/dnaMotif.c
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• src/lib/dtdParse.c
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• src/lib/dyOut.c
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• src/lib/elmTree.c
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• src/lib/emblParse.c
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• src/lib/errCatch.c
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• src/lib/ffScore.c
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• src/lib/fieldedTable.c
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• src/lib/filePath.c
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• src/lib/fixColor.c
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• src/lib/fq.c
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• src/lib/gapCalc.c
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• src/lib/genomeRangeTree.c
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• src/lib/gfNet.c
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• src/lib/gff3.c
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• src/lib/hacTree.c
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• src/lib/hex.c
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• src/lib/histogram.c
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• src/lib/hmac.c
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• src/lib/hmmPfamParse.c
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• src/lib/htmlColor.c
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• src/lib/htmlPage.c
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• src/lib/https.c
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    cf09d38904dd6b0333eb2369d8f84c3ee6478450 Tue Nov 23 23:35:32 2021 -0800
    Since IP addresses are automatically whitelisted and no cert verify takes place, we no longer need them. Also added a useful option for controlling the hardwired whitelist for hubCheck.
• src/lib/intValTree.c
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• src/lib/internet.c
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• src/lib/iupac.c
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• src/lib/jpegSize.c
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• src/lib/jsonParse.c
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• src/lib/jsonQuery.c
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• src/lib/jsonWrite.c
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• src/lib/knetUdc.c
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• src/lib/log.c
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• src/lib/longTabix.c
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• src/lib/longToList.c
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• src/lib/maf.c
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• src/lib/mafFromAxt.c
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• src/lib/mafScore.c
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• src/lib/mailViaPipe.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/makefile
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    cd0d3f081ff261f36b65ec1016d859ce3d50cb14 Mon Apr 19 14:29:28 2021 -0700
    Add -fno-common to library makefiles to fix common extern variable definition errors
• src/lib/meta.c
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• src/lib/metaWig.c
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• src/lib/nibTwo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/numObscure.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/obscure.c
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    080aff3c9de71d3a3ca71a0ae1bf758fe3d60208 Wed Nov 24 14:15:48 2021 -0800
    Adding dotForUserEnd() function to help avoid unclosed lines of dots.
• src/lib/paraFetch.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/peakCluster.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/phyloTree.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/pipeline.c
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    d17c507ba014280326dcbf54a3bbfd8e5f9989db Mon Nov 8 16:07:32 2021 -0800
    Fix pipeline timeout to properly ignore signal() returning non-zero, except in the case of a real error. Also get hgHubConnect to properly time out on hubCheck taking too long
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/psGfx.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/psPoly.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/pslGenoShow.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/pslTbl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/pslTransMap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/pthreadWrap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/qa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/quotedP.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/raToStruct.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/rangeTree.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/regexHelper.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/repMask.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/rnautil.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/rqlEval.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/rqlParse.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/rqlToSql.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/rudp.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/scoreWindow.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/seg.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/seqStats.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/spacedColumn.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/spacedSeed.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/sparseMatrix.c
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    3287d90dcd392481a06ee003ffd23b7d5e6b8b30 Wed Nov 24 14:17:02 2021 -0800
    Adding trailing end of line to I'm-alive dots.
• src/lib/sqlReserved.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/synQueue.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tabRow.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tagStorm.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tagToSql.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/dyStringTester.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/errCatchTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/fetchUrlTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/fetchUrlViaUdcTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/gff3Tester.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/hacTreeTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/htmlExpandUrlTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/htmlMimeTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/htmlPageTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/jsonQueryTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/mimeTester.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/miniBlat.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/pipelineTester.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/safeTester.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/tabixFetch.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/testBase64.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/testDecodedString.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/testHash.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/testOutOfMem.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/testQuotedP.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/testQuotedString.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/testSumDoubles.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/udcCacheSizesCheck.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/udcTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tests/vcfParseTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/textOut.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/tokenizer.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/trix.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/twoBit.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/udc.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/vGfx.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/vGfxPrivate.h
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/vPng.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/vcf.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/vcfBits.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/verbose.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/windowsToAscii.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/xmlEscape.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/lib/zlibFace.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/oneShot/adiposeRelabelImmune/adiposeRelabelImmune.c
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    b43226fefc74237ea63a4c28e43197cfd183bbad Wed Nov 24 14:19:04 2021 -0800
    Further one-shot hacking in wrangling adipose dataset.
• src/tabFile/tabJoin/expected.out
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    b6bccf8be481dbdbe6ead2a8cda1b8312a405008 Mon Nov 29 12:20:47 2021 -0800
    Adding simple test case.
• src/tabFile/tabJoin/makefile
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    05a94d31f6ff2235ef85a349732500e8b6b40564 Mon Nov 29 10:48:06 2021 -0800
    First cut at a join utility that is a bit slower but more careful than Unix's.
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    b9a0555ef32aa8101790c4a92c736a7ddd58ffbd Mon Nov 29 12:48:16 2021 -0800
    Making it so that you can use a field index as well as field name.
• src/tabFile/tabJoin/tabJoin.c
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    05a94d31f6ff2235ef85a349732500e8b6b40564 Mon Nov 29 10:48:06 2021 -0800
    First cut at a join utility that is a bit slower but more careful than Unix's.
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    4604bbe49ece6900be69ff88f34522738dafa36c Mon Nov 29 12:24:50 2021 -0800
    Improving error messages.
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    b9a0555ef32aa8101790c4a92c736a7ddd58ffbd Mon Nov 29 12:48:16 2021 -0800
    Making it so that you can use a field index as well as field name.
• src/tabFile/tabJoin/test1.tsv
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    b6bccf8be481dbdbe6ead2a8cda1b8312a405008 Mon Nov 29 12:20:47 2021 -0800
    Adding simple test case.
• src/tabFile/tabJoin/test2.tsv
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    b6bccf8be481dbdbe6ead2a8cda1b8312a405008 Mon Nov 29 12:20:47 2021 -0800
    Adding simple test case.
• src/tabFile/tabToTabDir/tabToTabDir.c
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    5864663e6eb6f35d2f994a33e18494d1f393fc25 Wed Nov 24 14:17:48 2021 -0800
    Added -sort option.
• src/utils/aNotB/aNotB.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/asCompare/asCompare.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/bamToFastq/bamToFastq.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/bbTest/bbTest.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/bdfToGem/bdfToGem.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/bedClip/bedClip.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/bedCommonRegions/bedCommonRegions.c
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• src/utils/bedGeneParts/bedGeneParts.c
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• src/utils/bedGraphPack/bedGraphPack.c
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• src/utils/bedGraphToBigWig/bedGraphToBigWig.c
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• src/utils/bedPileUps/bedPileUps.c
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• src/utils/bedRemoveOverlap/bedRemoveOverlap.c
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• src/utils/bedRestrictToPositions/bedRestrictToPositions.c
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• src/utils/bedScore/bedScore.c
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• src/utils/bedToBigBed/bedToBigBed.c
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• src/utils/bedToClosestPoint/bedToClosestPoint.c
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• src/utils/bestThreshold/bestThreshold.c
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• src/utils/bigBedInfo/bigBedInfo.c
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• src/utils/bigBedNamedItems/bigBedNamedItems.c
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• src/utils/bigBedSummary/bigBedSummary.c
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• src/utils/bigBedToBed/bigBedToBed.c
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• src/utils/bigWigAverageOverBed/bigWigAverageOverBed.c
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• src/utils/bigWigCat/bigWigCat.c
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• src/utils/bigWigCorrelate/bigWigCorrelate.c
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• src/utils/bigWigInfo/bigWigInfo.c
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• src/utils/bigWigMerge/bigWigMerge.c
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• src/utils/bigWigSummary/bigWigSummary.c
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• src/utils/bigWigToBedGraph/bigWigToBedGraph.c
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• src/utils/bigWigToWig/bigWigToWig.c
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• src/utils/cCp/cCp.c
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• src/utils/callGraph/callGraph.c
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• src/utils/catUncomment/catUncomment.c
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• src/utils/ccCp/ccCp.c
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• src/utils/ccCpLock/ccCp.3.c
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• src/utils/ccCpLock/ccCp.c
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• src/utils/ccCpLock/ccCp_rsh.c
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• src/utils/chainDist/chainDist.c
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• src/utils/chopFaLines/chopFaLines.c
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• src/utils/colTransform/colTransform.c
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• src/utils/colorConv/colorConv.c
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• src/utils/combineFiles/combineFiles.c
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• src/utils/convolve/convolve.c
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• src/utils/correlate/correlate.c
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• src/utils/countChars/countChars.c
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• src/utils/cpgIslandExt/cpg.c
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• src/utils/cpgIslandExt/cpg_lh.c
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• src/utils/cpgIslandExt/readseq.h
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• src/utils/crisprKmers/crisprKmers.c
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• src/utils/detab/detab.c
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• src/utils/dnsInfo/dnsInfo.c
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• src/utils/endsInLf/endsInLf.c
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• src/utils/est2genomeToPsl/est2genomeToPsl.c
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• src/utils/faFlyBaseToUcsc/faFlyBaseToUcsc.c
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• src/utils/faGapLocs/faGapLocs.c
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• src/utils/faGapSizes/faGapSizes.c
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• src/utils/faLowerToN/faLowerToN.c
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• src/utils/faNcbiToUcsc/faNcbiToUcsc.c
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• src/utils/faPolyASizes/faPolyASizes.c
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• src/utils/faRenameRecords/faRenameRecords.c
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• src/utils/faSimplify/faSimplify.c
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• src/utils/faToFastq/faToFastq.c
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• src/utils/faToNib/faToNib.c
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• src/utils/faToTab/faToTab.c
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• src/utils/faToTwoBit/faToTwoBit.c
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• src/utils/faTrans/faTrans.c
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• src/utils/faTrimPolyA/faTrimPolyA.c
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• src/utils/faTrimRead/faTrimRead.c
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• src/utils/faUniqify/faUniqify.c
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• src/utils/fastaToPsl/fastaToPsl.c
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• src/utils/fastqMottTrim/fastqMottTrim.c
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• src/utils/fastqStatsAndSubsample/fastqStatsAndSubsample.c
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• src/utils/fastqToFa/fastqToFa.c
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• src/utils/fileExists/fileExists.c
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• src/utils/findMotif/findMotif.c
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• src/utils/gapSplit/gapSplit.c
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• src/utils/genFedTableDef/genFedTableDef.c
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• src/utils/geneStarts/geneStarts.c
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• src/utils/gffPeek/gffPeek.c
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• src/utils/greedyPack/greedyPack.c
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• src/utils/headRest/headRest.c
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• src/utils/htmlCheck/htmlCheck.c
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• src/utils/htmlPics/htmlPics.c
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• src/utils/hubPublicMail
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    6e4cbac2aba40bbccdb0b80ca971ef56937c4086 Fri Dec 3 11:54:21 2021 -0800
    Fixing email time to report no RM
• src/utils/lineFileSplit/lineFileSplit.c
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• src/utils/lineRange/lineRange.c
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• src/utils/linesInAllFiles/linesInAllFiles.c
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• src/utils/makeRgbRainbow/makeRgbRainbow.c
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• src/utils/maxEachRow/maxEachRow.c
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• src/utils/methylateGenome/methylateGenome.c
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• src/utils/minEachRow/minEachRow.c
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• src/utils/newProg/newProg.c
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• src/utils/nibCheck/nibCheck.c
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• src/utils/nibFrag/nibFrag.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/nibSize/nibSize.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/nt4Frag/nt4Frag.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/paraFetch/paraFetch.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/paraSync/paraSync.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/plotDataMatrix/plotDataMatrix.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/pslMap/pslMap.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/pslPosTarget/pslPosTarget.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/utils/pslToPslx/pslToPslx.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/utils/pslToXa/pslToXa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/qa/hubPublicAutoUpdate
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    a576b64a56b2de30e8bb2423b0216e4de4abd122 Mon Nov 22 13:29:44 2021 -0800
    Adding user agent to emmulate connection from RR, and adding fail flag and timeout to reduce hanging on specific URLs. No RM.
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    961e7d93ed7c65ec1bc2929c411c4e6256f6d3ca Wed Nov 24 14:25:19 2021 -0800
    Adding full path to curl, because apparently we have 2 different versions of curl in the bins. No RM.
• src/utils/qa/weeklybld/buildEnv.csh
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    9e45eee991a29ec4b3c8e476ed1a40996607ed59 Mon Dec 6 10:10:38 2021 -0800
    v424 final build, refs #28521
• src/utils/qa/whoMadeIt.csh
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    613b9aaceba14457ae3c209cb46fc7fbd0b2500c Wed Nov 24 18:43:21 2021 -0800
    added kuhn and Max to alias list to combine different logins. added -w flag to alias to avoid grep on Max catching Max Haeussler. testing in goldenPath/help dir on customTrackText.html
• src/utils/raFromTab/raFromTab.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/utils/raMerge/raMerge.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/utils/raToLines/linesToRa/linesToRa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/raToLines/raToLines/raToLines.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/raToStructGen/raToStructGen.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/utils/raToStructGen/testOut/testRaToStruct.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/utils/raToSvmLight/raToSvmLight.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/utils/raToTab/raToTab.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/replaceTextBetween/replaceTextBetween.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/reverseLineOrder/reverseLineOrder.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/rmFaDups/rmFaDups.c
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• src/utils/rowsToCols/rowsToCols.c
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• src/utils/sampleIndexes/sampleIndexes.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/scrambleFa/scrambleFa.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/sets/sets.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/shuffleLines/shuffleLines.c
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• src/utils/sizeof/sizeof.c
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• src/utils/sortFa/sortFa.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/spacedToTab/spacedToTab.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/splitFileByColumn/splitFileByColumn.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/subChar/subChar.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/subColumn/subColumn.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/tTestTwo/tTestTwo.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/tableSum/tableSum.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/tailLines/tailLines.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/textBetween/textBetween.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/textHist2/textHist2.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/textHistogram/textHistogram.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/tickToDate/tickToDate.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/timing/gmtime.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/timing/gmtime/gmtime.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/timing/localtime.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/timing/localtime/localtime.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/timing/mktime.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
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• src/utils/timing/mktime/mktime.c
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• src/utils/toLower/toLower.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/twoBitDup/twoBitDup.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/twoBitInfo/twoBitInfo.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/twoBitToFa/twoBitToFa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/udcCleanup/udcCleanup.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/undupFa/undupFa.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/venn/venn.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/vennIds/vennIds.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/verticalSplitSqlTable/verticalSplitSqlTable.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/vulgarToPsl/vulgarToPsl.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/wgetMd5/wgetMd5.c
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    4898794edd81be5285ea6e544acbedeaeb31bf78 Tue Nov 23 08:10:57 2021 -0800
    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/wigAsciiCrunch/wigAsciiCrunch.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/wigAsciiToBinary/wigAsciiToBinary.c
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• src/utils/wigAsciiToBinary/wigBedToBinary.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/wigAsciiToBinary/wigZoom.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/wigCorrelate/wigCorrelate.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/wigSetSpanOrStep/wigSetSpanOrStep.c
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• src/utils/wigSort/wigSort.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/wigTestMaker/wigTestMaker.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/wigToBed/wigToBed.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/wigToBedGraph/wigToBedGraph.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/wigToBigWig/wigToBigWig.c
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    Fixing pointers to README file for license in all source code files. refs #27614
• src/utils/wordsInEachLine/wordsInEachLine.c
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    Fixing pointers to README file for license in all source code files. refs #27614